mRNA_L-elsbetiae_contig6864.15622.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6864.15622.1
Unique NamemRNA_L-elsbetiae_contig6864.15622.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6864.15622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6864contigL-elsbetiae_contig6864:3156..5975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2498
Cds size1395
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6864.15622.1prot_L-elsbetiae_contig6864.15622.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6864 3237..4953 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.525689-UTR-L-elsbetiae_contig6864:3155..32361622816759.525689-UTR-L-elsbetiae_contig6864:3155..3236Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6864 3156..3236 +
1691683792.1155117-UTR-L-elsbetiae_contig6864:3155..32361691683792.1155117-UTR-L-elsbetiae_contig6864:3155..3236Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6864 3156..3236 +
1622816759.5646465-UTR-L-elsbetiae_contig6864:4953..59751622816759.5646465-UTR-L-elsbetiae_contig6864:4953..5975Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6864 4954..5975 +
1691683792.157262-UTR-L-elsbetiae_contig6864:4953..59751691683792.157262-UTR-L-elsbetiae_contig6864:4953..5975Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6864 4954..5975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.5397089-CDS-L-elsbetiae_contig6864:3236..43401622816759.5397089-CDS-L-elsbetiae_contig6864:3236..4340Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6864 3237..4340 +
1691683792.1354942-CDS-L-elsbetiae_contig6864:3236..43401691683792.1354942-CDS-L-elsbetiae_contig6864:3236..4340Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6864 3237..4340 +
1622816759.5519621-CDS-L-elsbetiae_contig6864:4662..49531622816759.5519621-CDS-L-elsbetiae_contig6864:4662..4953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6864 4663..4953 +
1691683792.14659-CDS-L-elsbetiae_contig6864:4662..49531691683792.14659-CDS-L-elsbetiae_contig6864:4662..4953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6864 4663..4953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6864.15622.1

>prot_L-elsbetiae_contig6864.15622.1 ID=prot_L-elsbetiae_contig6864.15622.1|Name=mRNA_L-elsbetiae_contig6864.15622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=465bp
MDTEEGGEVGDAEEWRETGGGAVDDGGGGCRTVSGVDGARASLEEATQES
AKGSEEAGPQGIGDSMQGELEQAGGEAAVAVQDAVIPGIAVAAAAPAPDI
GAEAIGAPCSLGKRPRTCDAAGADDASGDENGGGVTAGAELDGGSSGGNA
SKRRRGEESAITVDAVASGSLAPPPDMALGLKMPAVEPEAAAAVVAATAA
AAADSATPGTVLVANGGNGDGTSHGNNASPKEAPNGHGGMHGPERKEVPM
EQSTGAASGSSAPVVAVSMVVAEVNRDREPGGQGGGGVGDGSVAQPEGRF
EPALQEGALEKPRGTGATCGDHELSAVRVPQENGHPPPTVAAAAAASSPP
RTSPSLHGAPTNRALDIMALAASSRPRVSSPPSSRSPSRDRSGSGGGSSN
SNGYHQGSGSSSPRGESSALDVMATAVEARAAAAPLCQAGGAGEEEGPPA
GTSRTGAHTPAGLL*
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mRNA from alignment at L-elsbetiae_contig6864:3156..5975+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6864.15622.1 ID=mRNA_L-elsbetiae_contig6864.15622.1|Name=mRNA_L-elsbetiae_contig6864.15622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2820bp|location=Sequence derived from alignment at L-elsbetiae_contig6864:3156..5975+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGCTTCCTTTGACGGCGGCCACATCGGCGGCGGGGCGCCCCTCGCGAC
GCCAGCCAACGGCGGCTCGTCGTTGTCCCCGATGGACACTGAAGAGGGAG
GAGAGGTGGGCGATGCCGAGGAATGGCGAGAAACCGGTGGCGGTGCCGTC
GACGACGGCGGCGGCGGCTGTCGCACCGTGAGTGGTGTGGACGGTGCTCG
AGCTTCTCTCGAGGAAGCCACCCAAGAATCTGCGAAAGGAAGCGAAGAGG
CAGGGCCGCAGGGCATCGGGGACAGCATGCAGGGAGAGTTGGAGCAGGCG
GGCGGAGAAGCGGCGGTGGCGGTGCAAGACGCCGTGATACCCGGCATCGC
TGTCGCCGCGGCTGCGCCTGCCCCTGACATCGGCGCGGAAGCAATAGGAG
CGCCGTGTTCTCTCGGGAAACGGCCCCGAACCTGCGACGCCGCTGGCGCG
GACGACGCCAGCGGCGACGAAAACGGCGGCGGCGTGACCGCTGGTGCAGA
GCTTGATGGTGGTAGCTCTGGTGGCAACGCGAGCAAGCGGCGGCGAGGGG
AGGAAAGCGCCATTACAGTCGACGCGGTCGCAAGCGGTAGCCTGGCGCCA
CCTCCGGACATGGCCTTGGGCCTGAAGATGCCGGCAGTGGAACCTGAAGC
TGCTGCCGCCGTTGTCGCCGCCACCGCCGCCGCCGCTGCTGACTCGGCCA
CTCCTGGCACCGTCTTGGTGGCCAACGGCGGCAACGGCGATGGCACCAGC
CACGGGAATAACGCGTCGCCCAAGGAAGCACCGAACGGCCACGGAGGCAT
GCACGGACCCGAAAGGAAGGAAGTGCCGATGGAACAGTCCACCGGCGCGG
CGAGCGGTAGCAGCGCTCCTGTTGTTGCGGTGTCGATGGTTGTGGCTGAG
GTCAACCGCGACCGGGAACCCGGCGGCCAGGGGGGCGGCGGGGTCGGAGA
TGGCAGCGTGGCGCAGCCCGAGGGACGGTTCGAACCCGCGTTGCAAGAGG
GAGCTCTCGAGAAGCCGAGAGGGACGGGAGCGACCTGCGGCGACCATGAG
CTGTCGGCTGTTCGGGTGCCGCAGGAGAACGGGCACCCGCCCCCGACGGT
GGCGGCGGCAGCGGCGGCTTCGTCTCCCCCTCGCACGTCTCCTTCGCTGC
ACGGAGCGCCCACGAATAGAGCCCTCGATATCATGGTGAGAAGCAAAAGC
ACGCTTGTGCTGCTGTGCTGCTGTCTGTCGTCAAGGCACGGCGCCAACGA
TGAATCTGGGTGTCCACGTGCGGTGGTCCCTCCTGTGAACTACCCCAGTA
CCTTGTTATTTTATTATCCACCATCGCTCTCTACTACTAACTGTTTCCTG
AAGACCGCAGCCATACTCAACCCCCAGATAACTCCCTTTTGCACCTCACT
CGCACGCACGGGATCTGATCGACCTGCTCCGACTCTCCCCTGATCGACCT
GCTCCGACTCCCCCCCCCCCCCCCCCCCCACCGTTCCATTCTTCGCACCA
CCACTAGGCGCTAGCGGCATCCTCCCGCCCACGGGTGTCATCCCCTCCTT
CCAGCCGATCGCCCTCTCGCGACCGCAGTGGTAGCGGTGGCGGCAGCAGC
AACAGCAACGGGTACCATCAAGGCAGCGGCTCCTCCTCCCCCCGTGGCGA
GAGCAGCGCGCTCGACGTGATGGCTACGGCTGTGGAGGCTCGCGCGGCGG
CGGCTCCGCTGTGCCAGGCTGGAGGGGCGGGGGAGGAAGAAGGTCCTCCT
GCCGGAACTTCTAGGACCGGTGCCCATACGCCTGCTGGGCTGCTGTAGGT
GGTGGTGGTGGTGGGGGGTGTTGTGCGGTTCTCGTTCTCTTTGCGGGCTG
ATTTGGTGGCTTTTGACTGCCTCGCCCGCCACGTCCGGGCCGTGCGCTAT
TTATAGGGCGTTCAAGGACAGGGGGCGTGGGATCACAGCTATTTGTGCGA
AGCTATCGACCCAAGAACCTTCCAAGAACCTTCCAGGGACGGAGGGGGCG
GTGGGGGTGTGCGTGTGCGTCGTGCGTCCTAGAGGTATCTATCTGTGTGT
GCGTCCTTGGCAGAAGGGGCACGCTTTTGCCTTCGCAGACGTTAACAAAA
TGGGCCCTCCGCTCGTTGTTCATGGGTGATACTCTGGGGGGGGGGGTCGT
GACTGCCTAATCGCTGCGTGGTTGCCTTCTTAAACGCGTGAACTCCGCGC
GGAAGGTGTTGATCAATATTCTAAAAGGCAGCCGTTGTTTCCGGTGTGTA
GAAGGCAAGGTACACCCAGCGTCTCCCTTCTTTGCGTATTTTTCTTGTTG
AGTCCCACGCCAAGCGCGCGCGGTGTTGGCAGCAGCAGAAATATGGACGG
CGTGTATTTGACTGCGTGGGAAGTTTTGTGCGTGCGAGTTGGGGGTTTAT
TTCATGATATGGGGGAGAGAGGTTTTAAGATATGGGGAGATATTTTTTTA
AGACATGTTTCTTCTTTTCCCCCGTGCTTCGGTAGGCTCGGCAGAGAGGC
GGAGCAGAGAGGCGAGGTTGATTGATCACCATGCGTGTGGCCGCATCGGG
CTACTGTGGTTTCGAATACATTTTCGCGACATTATGCTAGCGGCGACGGC
TGGATTGCTTCTGATATTGATCAGCCGTAACAACCTCAGCACAAGCGGGG
CGAAAAAGGCAAAAGACTGGGAAGAAGGCACATATGTATGTACGTGGTTT
TATTAAGCACGCTCCCGTGGCGTTATTTGTTGCATTTTAGGCCGTATGGT
CTGCGCTGGCGTGGCCGAAAGAGGCCACCGGCATTTTGGTAGGTAAATGG
AGGTCAGGATTGATTGGGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6864:3156..5975+

>mRNA_L-elsbetiae_contig6864.15622.1 ID=mRNA_L-elsbetiae_contig6864.15622.1|Name=mRNA_L-elsbetiae_contig6864.15622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2790bp|location=Sequence derived from alignment at L-elsbetiae_contig6864:3156..5975+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACACTGAAGAGGGAGGAGAGGTGGGCGATGCCGAGGAATGGCGAGA
AACCGGTGGCGGTGCCGTCGACGACGGCGGCGGCGGCTGTCGCACCGTGA
GTGGTGTGGACGGTGCTCGAGCTTCTCTCGAGGAAGCCACCCAAGAATCT
GCGAAAGGAAGCGAAGAGGCAGGGCCGCAGGGCATCGGGGACAGCATGCA
GGGAGAGTTGGAGCAGGCGGGCGGAGAAGCGGCGGTGGCGGTGCAAGACG
CCGTGATACCCGGCATCGCTGTCGCCGCGGCTGCGCCTGCCCCTGACATC
GGCGCGGAAGCAATAGGAGCGCCGTGTTCTCTCGGGAAACGGCCCCGAAC
CTGCGACGCCGCTGGCGCGGACGACGCCAGCGGCGACGAAAACGGCGGCG
GCGTGACCGCTGGTGCAGAGCTTGATGGTGGTAGCTCTGGTGGCAACGCG
AGCAAGCGGCGGCGAGGGGAGGAAAGCGCCATTACAGTCGACGCGGTCGC
AAGCGGTAGCCTGGCGCCACCTCCGGACATGGCCTTGGGCCTGAAGATGC
CGGCAGTGGAACCTGAAGCTGCTGCCGCCGTTGTCGCCGCCACCGCCGCC
GCCGCTGCTGACTCGGCCACTCCTGGCACCGTCTTGGTGGCCAACGGCGG
CAACGGCGATGGCACCAGCCACGGGAATAACGCGTCGCCCAAGGAAGCAC
CGAACGGCCACGGAGGCATGCACGGACCCGAAAGGAAGGAAGTGCCGATG
GAACAGTCCACCGGCGCGGCGAGCGGTAGCAGCGCTCCTGTTGTTGCGGT
GTCGATGGTTGTGGCTGAGGTCAACCGCGACCGGGAACCCGGCGGCCAGG
GGGGCGGCGGGGTCGGAGATGGCAGCGTGGCGCAGCCCGAGGGACGGTTC
GAACCCGCGTTGCAAGAGGGAGCTCTCGAGAAGCCGAGAGGGACGGGAGC
GACCTGCGGCGACCATGAGCTGTCGGCTGTTCGGGTGCCGCAGGAGAACG
GGCACCCGCCCCCGACGGTGGCGGCGGCAGCGGCGGCTTCGTCTCCCCCT
CGCACGTCTCCTTCGCTGCACGGAGCGCCCACGAATAGAGCCCTCGATAT
CATGATGGACACTGAAGAGGGAGGAGAGGTGGGCGATGCCGAGGAATGGC
GAGAAACCGGTGGCGGTGCCGTCGACGACGGCGGCGGCGGCTGTCGCACC
GTGAGTGGTGTGGACGGTGCTCGAGCTTCTCTCGAGGAAGCCACCCAAGA
ATCTGCGAAAGGAAGCGAAGAGGCAGGGCCGCAGGGCATCGGGGACAGCA
TGCAGGGAGAGTTGGAGCAGGCGGGCGGAGAAGCGGCGGTGGCGGTGCAA
GACGCCGTGATACCCGGCATCGCTGTCGCCGCGGCTGCGCCTGCCCCTGA
CATCGGCGCGGAAGCAATAGGAGCGCCGTGTTCTCTCGGGAAACGGCCCC
GAACCTGCGACGCCGCTGGCGCGGACGACGCCAGCGGCGACGAAAACGGC
GGCGGCGTGACCGCTGGTGCAGAGCTTGATGGTGGTAGCTCTGGTGGCAA
CGCGAGCAAGCGGCGGCGAGGGGAGGAAAGCGCCATTACAGTCGACGCGG
TCGCAAGCGGTAGCCTGGCGCCACCTCCGGACATGGCCTTGGGCCTGAAG
ATGCCGGCAGTGGAACCTGAAGCTGCTGCCGCCGTTGTCGCCGCCACCGC
CGCCGCCGCTGCTGACTCGGCCACTCCTGGCACCGTCTTGGTGGCCAACG
GCGGCAACGGCGATGGCACCAGCCACGGGAATAACGCGTCGCCCAAGGAA
GCACCGAACGGCCACGGAGGCATGCACGGACCCGAAAGGAAGGAAGTGCC
GATGGAACAGTCCACCGGCGCGGCGAGCGGTAGCAGCGCTCCTGTTGTTG
CGGTGTCGATGGTTGTGGCTGAGGTCAACCGCGACCGGGAACCCGGCGGC
CAGGGGGGCGGCGGGGTCGGAGATGGCAGCGTGGCGCAGCCCGAGGGACG
GTTCGAACCCGCGTTGCAAGAGGGAGCTCTCGAGAAGCCGAGAGGGACGG
GAGCGACCTGCGGCGACCATGAGCTGTCGGCTGTTCGGGTGCCGCAGGAG
AACGGGCACCCGCCCCCGACGGTGGCGGCGGCAGCGGCGGCTTCGTCTCC
CCCTCGCACGTCTCCTTCGCTGCACGGAGCGCCCACGAATAGAGCCCTCG
ATATCATGGCGCTAGCGGCATCCTCCCGCCCACGGGTGTCATCCCCTCCT
TCCAGCCGATCGCCCTCTCGCGACCGCAGTGGTAGCGGTGGCGGCAGCAG
CAACAGCAACGGGTACCATCAAGGCAGCGGCTCCTCCTCCCCCCGTGGCG
AGAGCAGCGCGCTCGACGTGATGGCTACGGCTGTGGAGGCTCGCGCGGCG
GCGGCTCCGCTGTGCCAGGCTGGAGGGGCGGGGGAGGAAGAAGGTCCTCC
TGCCGGAACTTCTAGGACCGGTGCCCATACGCCTGCTGGGCTGCTGTAGG
CGCTAGCGGCATCCTCCCGCCCACGGGTGTCATCCCCTCCTTCCAGCCGA
TCGCCCTCTCGCGACCGCAGTGGTAGCGGTGGCGGCAGCAGCAACAGCAA
CGGGTACCATCAAGGCAGCGGCTCCTCCTCCCCCCGTGGCGAGAGCAGCG
CGCTCGACGTGATGGCTACGGCTGTGGAGGCTCGCGCGGCGGCGGCTCCG
CTGTGCCAGGCTGGAGGGGCGGGGGAGGAAGAAGGTCCTCCTGCCGGAAC
TTCTAGGACCGGTGCCCATACGCCTGCTGGGCTGCTGTAG
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