mRNA_L-elsbetiae_contig6863.15621.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6863.15621.1
Unique NamemRNA_L-elsbetiae_contig6863.15621.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6863.15621.1 vs. uniprot
Match: A0A1Y1WUU0_9FUNG (Metacaspase n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1WUU0_9FUNG)

HSP 1 Score: 76.3 bits (186), Expect = 1.020e-13
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 3 
Query:    3 WMVKGVKRGDSLFFSFSGHGGTNKNKTRQVIGATDR-----------HITDREIYDELVTAIPRDASLTAVVDSCGSGTVFNLPF 224
            W+V+G + GDSLFF +SGHGGT K+K    +   D             I D  IY+ LVT +P+   LTA+ DSC SGTV +LP+
Sbjct:  115 WLVQGARPGDSLFFHYSGHGGTAKDKDNDEVDGFDETILPLDYQTAGQIIDDVIYENLVTPLPQGCRLTAIFDSCHSGTVLDLPY 199
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BLAST of mRNA_L-elsbetiae_contig6863.15621.1 vs. uniprot
Match: A0A1Y2EQI0_9FUNG (Peptidase C14 n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2EQI0_9FUNG)

HSP 1 Score: 76.3 bits (186), Expect = 1.070e-13
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 3 
Query:    3 WMVKGVKRGDSLFFSFSGHGGTNKNKTRQVIGATDR-----------HITDREIYDELVTAIPRDASLTAVVDSCGSGTVFNLPF 224
            W+V+G K+GDSLFF +SGHGGT+++     +   D             I D  IY+ LVT +P+   LTA+ DSC SGTV +LP+
Sbjct:  123 WLVQGAKQGDSLFFHYSGHGGTSRDSDSDEVDGFDETILPLDYETAGQIIDDVIYENLVTPLPQGCRLTAIFDSCHSGTVLDLPY 207
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BLAST of mRNA_L-elsbetiae_contig6863.15621.1 vs. uniprot
Match: A0A1Y1V3J7_9FUNG (Uncharacterized protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1V3J7_9FUNG)

HSP 1 Score: 76.3 bits (186), Expect = 1.200e-13
Identity = 38/85 (44.71%), Postives = 48/85 (56.47%), Query Frame = 3 
Query:    3 WMVKGVKRGDSLFFSFSGHGGTNKNKTRQVIGATDR-----------HITDREIYDELVTAIPRDASLTAVVDSCGSGTVFNLPF 224
            W+ K  K GDSLFF +SGHGGT K+K    +   D             I D +IY+ LV  +PR   LTA+ DSC SGTV +LP+
Sbjct:  148 WLTKDAKAGDSLFFHYSGHGGTAKDKDNDEVDGFDETILPCDYLTNGQILDDDIYENLVAPLPRGCRLTAIFDSCHSGTVMDLPY 232
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BLAST of mRNA_L-elsbetiae_contig6863.15621.1 vs. uniprot
Match: A0A1Y1V4B7_9FUNG (Uncharacterized protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1V4B7_9FUNG)

HSP 1 Score: 76.3 bits (186), Expect = 1.480e-13
Identity = 39/85 (45.88%), Postives = 50/85 (58.82%), Query Frame = 3 
Query:    3 WMVKGVKRGDSLFFSFSGHGGTNKNKTRQVIGATDR-----------HITDREIYDELVTAIPRDASLTAVVDSCGSGTVFNLPF 224
            W+V+G K GDSLFF +SGHGGT K+     +   D             ITD  IY+ LVT +P+   LTA+ DSC SGTV +LP+
Sbjct:  231 WLVQGAKSGDSLFFHYSGHGGTAKDGDGDEVDGYDETIIPLDYESAGQITDDIIYENLVTPLPQGCRLTAIFDSCHSGTVLDLPY 315
[Close]
BLAST of mRNA_L-elsbetiae_contig6863.15621.1 vs. uniprot
Match: I4Y6M3_WALMC (Uncharacterized protein n=1 Tax=Wallemia mellicola (strain ATCC MYA-4683 / CBS 633.66) TaxID=671144 RepID=I4Y6M3_WALMC)

HSP 1 Score: 75.1 bits (183), Expect = 1.950e-13
Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 3 
Query:    3 WMVKGVKRGDSLFFSFSGHGGTNKNKT-----------RQVIGATDRHITDREIYDELVTAIPRDASLTAVVDSCGSGTVFNLPFIADKNFD 245
            W+VKG K  D+LFF +SGHGG  K+ +           +++      HI D  ++DELV  +P    LTA+ DSC SGT  +LPFI D N D
Sbjct:   95 WLVKGAKLNDALFFHYSGHGGRTKDLSGYDETVFPVDFQKLTYVHTGHILDDTLHDELVRPLPAGCRLTAIFDSCHSGTALDLPFIYDSNGD 186
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BLAST of mRNA_L-elsbetiae_contig6863.15621.1 vs. uniprot
Match: A0A1Y1V5D0_9FUNG (Uncharacterized protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1V5D0_9FUNG)

HSP 1 Score: 75.5 bits (184), Expect = 2.800e-13
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 3 
Query:    3 WMVKGVKRGDSLFFSFSGHGGTNKNKTRQVIGATDR-----------HITDREIYDELVTAIPRDASLTAVVDSCGSGTVFNLPF 224
            W+V+G K GDSLFF +SGHGGT K++    +   D             I D  IY+ LVT +P+   LTA+ DSC SGTV +LP+
Sbjct:  253 WLVQGAKSGDSLFFHYSGHGGTAKDEDGDEVDGFDETILPLDYQKAGQIIDDVIYENLVTPLPQGCRLTAIFDSCHSGTVLDLPY 337
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BLAST of mRNA_L-elsbetiae_contig6863.15621.1 vs. uniprot
Match: A0A1Y3NCQ0_PIRSE (Uncharacterized protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NCQ0_PIRSE)

HSP 1 Score: 75.1 bits (183), Expect = 2.960e-13
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:    3 WMVKGVKRGDSLFFSFSGHGGTNKNKTRQVIGATDR-----------HITDREIYDELVTAIPRDASLTAVVDSCGSGTVFNLPF 224
            W+V+G K GDSLFF +SGHGGT K+     +   D             I D  IY+ LVT +P+   LTA+ DSC SGTV +LP+
Sbjct:  130 WLVQGAKSGDSLFFHYSGHGGTAKDTDGDEVDGFDETILPLDFQKSGQIVDDVIYEHLVTPLPQGCRLTAIFDSCHSGTVLDLPY 214
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BLAST of mRNA_L-elsbetiae_contig6863.15621.1 vs. uniprot
Match: A0A1Y3NEK2_PIRSE (Uncharacterized protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NEK2_PIRSE)

HSP 1 Score: 75.1 bits (183), Expect = 3.820e-13
Identity = 40/85 (47.06%), Postives = 48/85 (56.47%), Query Frame = 3 
Query:    3 WMVKGVKRGDSLFFSFSGHGGTNKNKTRQVIGATDR-----------HITDREIYDELVTAIPRDASLTAVVDSCGSGTVFNLPF 224
            W+VKG K GDSLFF +SGHGG  ++K    I   D             I D EIY  LV  +P+   LTA+ DSC SGTV NLP+
Sbjct:  256 WLVKGAKSGDSLFFHYSGHGGKVQDKNGDEIDGFDETIVPLDYLKNGEIIDDEIYKYLVQPLPKCCRLTAIFDSCHSGTVMNLPY 340
[Close]
BLAST of mRNA_L-elsbetiae_contig6863.15621.1 vs. uniprot
Match: A0A1Y1V3D5_9FUNG (Uncharacterized protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1V3D5_9FUNG)

HSP 1 Score: 74.3 bits (181), Expect = 6.270e-13
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:    3 WMVKGVKRGDSLFFSFSGHGGTNKNKTRQVIGATDR-----------HITDREIYDELVTAIPRDASLTAVVDSCGSGTVFNLPF 224
            W+V+G + GDSLFF +SGHGGT  +K        D             I D EIY+ LVT +P+   LTA+ DSC SGTV +LP+
Sbjct:  168 WLVEGAQPGDSLFFHYSGHGGTATDKEGDETDGFDETIIPLDFQSKGQILDDEIYENLVTPLPKGCRLTAIFDSCHSGTVMDLPY 252
[Close]
BLAST of mRNA_L-elsbetiae_contig6863.15621.1 vs. uniprot
Match: A0A1Y3NLD9_PIRSE (Uncharacterized protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NLD9_PIRSE)

HSP 1 Score: 73.6 bits (179), Expect = 7.170e-13
Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:    3 WMVKGVKRGDSLFFSFSGHGGTNKNKTRQVIGATDR-----------HITDREIYDELVTAIPRDASLTAVVDSCGSGTVFNLPF 224
            W+V+G K GDSLFF +SGHGGT ++     +   D             I D  IY+ LVT +P+   LTA+ DSC SGTV +LP+
Sbjct:   67 WLVQGAKSGDSLFFHYSGHGGTARDADGDEVDGYDETILPLDYETAGQILDDVIYENLVTPLPQGCRLTAIFDSCHSGTVLDLPY 151
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6863.15621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1WUU0_9FUNG1.020e-1344.71Metacaspase n=1 Tax=Anaeromyces robustus TaxID=175... [more]
A0A1Y2EQI0_9FUNG1.070e-1343.53Peptidase C14 n=1 Tax=Neocallimastix californiae T... [more]
A0A1Y1V3J7_9FUNG1.200e-1344.71Uncharacterized protein n=1 Tax=Piromyces finnis T... [more]
A0A1Y1V4B7_9FUNG1.480e-1345.88Uncharacterized protein n=1 Tax=Piromyces finnis T... [more]
I4Y6M3_WALMC1.950e-1342.39Uncharacterized protein n=1 Tax=Wallemia mellicola... [more]
A0A1Y1V5D0_9FUNG2.800e-1344.71Uncharacterized protein n=1 Tax=Piromyces finnis T... [more]
A0A1Y3NCQ0_PIRSE2.960e-1344.71Uncharacterized protein n=1 Tax=Piromyces sp. (str... [more]
A0A1Y3NEK2_PIRSE3.820e-1347.06Uncharacterized protein (Fragment) n=1 Tax=Piromyc... [more]
A0A1Y1V3D5_9FUNG6.270e-1344.71Uncharacterized protein n=1 Tax=Piromyces finnis T... [more]
A0A1Y3NLD9_PIRSE7.170e-1343.53Uncharacterized protein (Fragment) n=1 Tax=Piromyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6863contigL-elsbetiae_contig6863:5283..7184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score71.6
Seed ortholog evalue3.1e-10
Seed eggNOG ortholog148960.XP_006960278.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptidase C14
EggNOG OGs38EI0@33154,3NW3X@4751,3UZK9@5204,KOG1546@1,KOG1546@2759
COG Functional cat.DO
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Exons4
Model size407
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6863.15621.1prot_L-elsbetiae_contig6863.15621.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6863 5288..7184 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.4386744-UTR-L-elsbetiae_contig6863:5282..52871622816759.4386744-UTR-L-elsbetiae_contig6863:5282..5287Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6863 5283..5287 +
1691683792.0674644-UTR-L-elsbetiae_contig6863:5282..52871691683792.0674644-UTR-L-elsbetiae_contig6863:5282..5287Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6863 5283..5287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.448889-CDS-L-elsbetiae_contig6863:5287..53361622816759.448889-CDS-L-elsbetiae_contig6863:5287..5336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6863 5288..5336 +
1691683792.0776515-CDS-L-elsbetiae_contig6863:5287..53361691683792.0776515-CDS-L-elsbetiae_contig6863:5287..5336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6863 5288..5336 +
1622816759.4642267-CDS-L-elsbetiae_contig6863:5450..55361622816759.4642267-CDS-L-elsbetiae_contig6863:5450..5536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6863 5451..5536 +
1691683792.0881793-CDS-L-elsbetiae_contig6863:5450..55361691683792.0881793-CDS-L-elsbetiae_contig6863:5450..5536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6863 5451..5536 +
1622816759.4791787-CDS-L-elsbetiae_contig6863:6654..68011622816759.4791787-CDS-L-elsbetiae_contig6863:6654..6801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6863 6655..6801 +
1691683792.096681-CDS-L-elsbetiae_contig6863:6654..68011691683792.096681-CDS-L-elsbetiae_contig6863:6654..6801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6863 6655..6801 +
1622816759.4899395-CDS-L-elsbetiae_contig6863:7064..71841622816759.4899395-CDS-L-elsbetiae_contig6863:7064..7184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6863 7065..7184 +
1691683792.104867-CDS-L-elsbetiae_contig6863:7064..71841691683792.104867-CDS-L-elsbetiae_contig6863:7064..7184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6863 7065..7184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6863.15621.1

>prot_L-elsbetiae_contig6863.15621.1 ID=prot_L-elsbetiae_contig6863.15621.1|Name=mRNA_L-elsbetiae_contig6863.15621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
MVKGVKRGDSLFFSFSGHGGTNKNKTRQVIGATDRHITDREIYDELVTAI
PRDASLTAVVDSCGSGTVFNLPFIADKNFDEGLIHANSLFKKDTAKDTDW
NIQERNARLVRWNEVRRAEMESITSISPPQVAG*
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mRNA from alignment at L-elsbetiae_contig6863:5283..7184+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6863.15621.1 ID=mRNA_L-elsbetiae_contig6863.15621.1|Name=mRNA_L-elsbetiae_contig6863.15621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1902bp|location=Sequence derived from alignment at L-elsbetiae_contig6863:5283..7184+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGGATGGTGAAAGGCGTGAAACGGGGAGACAGCCTGTTCTTTTCATTT
TCAGGTGAGAAAACTAGAACAACTATCAACAAAGGTGTGTGTATGAAGCC
ATGGAACTTGCTATATTTGACGAAAAAATACCTCGTGCGCAACAACAATA
ACCGCTGATTGTCGACAGGACATGGAGGGACCAACAAAAACAAAACGCGG
CAGGTGATTGGCGCCACCGATCGACACATAACCGACAGAGAAATCTACGA
CGAGGTAGGTGTCCGAGGGTAACTAACCTTGGTTAGTTTATTAGCTCGTC
AGTACATTCCTCGCACTTGCTTCAAAAACGTTGGTTTTGACTGAAGCGGA
AGCGTGCCATGCGTCAGAATACTATGTAGCTCTAGATTCATTCATGGTAC
TTACATAGAGGAGGGTATCAAAGGGTCACTCTGTATTATGAATGATGTGG
CGCAGTTTCGTTACGATTTTCAGAACTCCTCCTATGGCACGCAAGCATGA
TAGTAACACACAAAGATTTTGCAAAAACAAAAGTTCCGTGCATACCCGAG
GACAAAATTGGGAAGCTCCGGGTGTTTTTTCGCCTGTTTGAGCCCAAAGC
ATGACGAACGTTGAGCGACGTGCAAACAGTTTGAAAACGCTGTTTTCTAT
GTATTATTAACTTTTCTTCGGCGTCTCGTGGTGACCAGGCGTCATGCAAA
AATGTGTTGCCATCGGAGTGAATTTCCTCTCAATCTCACACTCAGAACTT
ATTTGTTTTGCCCACTTTTCGGCAAAAAATCGAGGGAGACCGGGGGAAGA
AGTAAAAACATAAAAGTGGGTGAAAACAACGTGGCAGCGTGCGGCTTCTT
CGGTCGAACGCTCCATCAGCTGCGTGACACAACTTATCGCAACACGTTTA
GCAAAAAGTACTCTGTCTGGCCGGGATTTTTATTTTTGGTTAAGCATAGA
TAATACTCCAGCACAAAGGTTGAAAATGACCCCTTTGCTCAGCCGCAGCC
ACCGGACAAGGTCGAAAGAGCAGAAAATCACGCATGGCATGTCGCCGAGT
GCTGAAAAAAGCGAAGTTTTTTGCCAAATAATTGAGCAAACTTGTTCTTG
GACGATAGATGAGGTCCGTGGCAACACAGCAATAACAAGGACAAACGCTT
CCTGCGACTTCGTCGGCCAGATATGTTTTTTTGAATCGAGTGGCCCTCAA
TACCCCCCACCCTCCTTTATTCAATAGGTGTATGGTGCATATAATTTTAG
AGCTCGTCGTGCGCGCTAATATTTTCATGCAGGGTTTGGTTCCGGAACTC
GATACCCCTCTTCCCTGACATCGTTGTTCGATTTTCACGCAATGACCGTT
ACGTTCCATTTAAACAAAACAGCTGGTAACCGCCATACCGAGGGATGCTT
CCCTAACGGCTGTGGTGGATTCCTGCGGCAGCGGCACGGTCTTCAATCTT
CCGTTCATTGCCGACAAGAACTTCGACGAAGGCCTGATACACGCGAATTC
ACTGTTCAAGAAAGACACCGTGAGCCATCCCAAATTGGGATCTATCTAGC
GCAAGGAGACTTAACGATAGGGCTCAGAAAATCAATCAGCTAAATTTAAA
CCTGCGGTTGTGTTTTGTAAAGGGTGTTGCGCTTGATAGCCTTGCCGCTC
CGTTGGATTTTGGGCATCGGGCTGTCGAGTTGGGAATACTATTATTATTG
TGCCGCTTCCAAAATTAGCACCTGTTGACAAAGACTATTATTGCTGTATC
ACTCTCAACATGCCCCCTCCCATTCTTCCCAGGCGAAGGACACCGATTGG
AACATTCAGGAGCGCAACGCCCGCCTTGTTCGTTGGAATGAGGTTCGTCG
GGCTGAGATGGAATCGATCACTTCGATAAGTCCGCCACAGGTGGCAGGAT
GA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6863:5283..7184+

>mRNA_L-elsbetiae_contig6863.15621.1 ID=mRNA_L-elsbetiae_contig6863.15621.1|Name=mRNA_L-elsbetiae_contig6863.15621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig6863:5283..7184+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAAAGGCGTGAAACGGGGAGACAGCCTGTTCTTTTCATTTTCAGA
TGGTGAAAGGCGTGAAACGGGGAGACAGCCTGTTCTTTTCATTTTCAGGA
CATGGAGGGACCAACAAAAACAAAACGCGGCAGGTGATTGGCGCCACCGA
TCGACACATAACCGACAGAGAAATCTACGACGAGGACATGGAGGGACCAA
CAAAAACAAAACGCGGCAGGTGATTGGCGCCACCGATCGACACATAACCG
ACAGAGAAATCTACGACGAGCTGGTAACCGCCATACCGAGGGATGCTTCC
CTAACGGCTGTGGTGGATTCCTGCGGCAGCGGCACGGTCTTCAATCTTCC
GTTCATTGCCGACAAGAACTTCGACGAAGGCCTGATACACGCGAATTCAC
TGTTCAAGAAAGACACCCTGGTAACCGCCATACCGAGGGATGCTTCCCTA
ACGGCTGTGGTGGATTCCTGCGGCAGCGGCACGGTCTTCAATCTTCCGTT
CATTGCCGACAAGAACTTCGACGAAGGCCTGATACACGCGAATTCACTGT
TCAAGAAAGACACCGCGAAGGACACCGATTGGAACATTCAGGAGCGCAAC
GCCCGCCTTGTTCGTTGGAATGAGGTTCGTCGGGCTGAGATGGAATCGAT
CACTTCGATAAGTCCGCCACAGGTGGCAGGATGAGCGAAGGACACCGATT
GGAACATTCAGGAGCGCAACGCCCGCCTTGTTCGTTGGAATGAGGTTCGT
CGGGCTGAGATGGAATCGATCACTTCGATAAGTCCGCCACAGGTGGCAGG
ATGA
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