mRNA_L-elsbetiae_contig6862.15620.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6862.15620.1
Unique NamemRNA_L-elsbetiae_contig6862.15620.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6862.15620.1 vs. uniprot
Match: A0A226NTH7_COLVI (RuvB-like helicase n=1 Tax=Colinus virginianus TaxID=9014 RepID=A0A226NTH7_COLVI)

HSP 1 Score: 117 bits (294), Expect = 1.070e-31
Identity = 55/58 (94.83%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 VVNRYIDQGVAELVPGVLFVDEVHMLDIECFTYLNRALESSLSPIVIFATNRGVCTIR 174
            VVNRYIDQG+AELVPGVLF+DEVHMLDIECFTYLNRALESSLSPIV+FATNRGVCTIR
Sbjct:  128 VVNRYIDQGIAELVPGVLFIDEVHMLDIECFTYLNRALESSLSPIVVFATNRGVCTIR 185
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BLAST of mRNA_L-elsbetiae_contig6862.15620.1 vs. uniprot
Match: A0A444XCF9_ARAHY (RuvB-like helicase n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444XCF9_ARAHY)

HSP 1 Score: 112 bits (279), Expect = 5.340e-31
Identity = 51/58 (87.93%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    1 VVNRYIDQGVAELVPGVLFVDEVHMLDIECFTYLNRALESSLSPIVIFATNRGVCTIR 174
            VVNRYID+GVAELVPGVLF+DEVHMLD+ECF+YLNRALESSLSPIVIFATNRG+C +R
Sbjct:    5 VVNRYIDEGVAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNVR 62
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BLAST of mRNA_L-elsbetiae_contig6862.15620.1 vs. uniprot
Match: UPI001C71B45F (ruvB-like protein 1 n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C71B45F)

HSP 1 Score: 112 bits (279), Expect = 5.660e-31
Identity = 51/58 (87.93%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    1 VVNRYIDQGVAELVPGVLFVDEVHMLDIECFTYLNRALESSLSPIVIFATNRGVCTIR 174
            VVNRYID+GVAELVPGVLF+DEVHMLD+ECF+YLNRALESSLSPIVIFATNRG+C +R
Sbjct:   15 VVNRYIDEGVAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNVR 72
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BLAST of mRNA_L-elsbetiae_contig6862.15620.1 vs. uniprot
Match: A0A7J6PVB7_PEROL (RuvB-like helicase n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PVB7_PEROL)

HSP 1 Score: 114 bits (284), Expect = 1.260e-30
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 VVNRYIDQGVAELVPGVLFVDEVHMLDIECFTYLNRALESSLSPIVIFATNRGVCTIR 174
            VVNRYIDQG+AELVPGVLFVDEVHMLDIECFTYLNR LES LSPI++FATNRG+CTIR
Sbjct:   56 VVNRYIDQGIAELVPGVLFVDEVHMLDIECFTYLNRVLESPLSPIIVFATNRGICTIR 113
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BLAST of mRNA_L-elsbetiae_contig6862.15620.1 vs. uniprot
Match: A0A482SF84_9ARCH (AAA family ATPase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SF84_9ARCH)

HSP 1 Score: 116 bits (291), Expect = 1.400e-30
Identity = 55/58 (94.83%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 VVNRYIDQGVAELVPGVLFVDEVHMLDIECFTYLNRALESSLSPIVIFATNRGVCTIR 174
            VVNRYIDQG+AELVPGVLF+DEVHMLDIECFT+LNRALESSLSPIVIFATNRGVCTIR
Sbjct:  231 VVNRYIDQGIAELVPGVLFIDEVHMLDIECFTFLNRALESSLSPIVIFATNRGVCTIR 288
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BLAST of mRNA_L-elsbetiae_contig6862.15620.1 vs. uniprot
Match: D8LJM6_ECTSI (RuvB-like helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM6_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.420e-30
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 VVNRYIDQGVAELVPGVLFVDEVHMLDIECFTYLNRALESSLSPIVIFATNRGVCTIR 174
            VVNRYIDQGVAELVPGVLFVDEVHMLDIECFTYLNRALESSLSPIVIFATNRGVCTIR
Sbjct:  282 VVNRYIDQGVAELVPGVLFVDEVHMLDIECFTYLNRALESSLSPIVIFATNRGVCTIR 339
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BLAST of mRNA_L-elsbetiae_contig6862.15620.1 vs. uniprot
Match: A0A7S4WAQ7_9STRA (RuvB-like helicase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WAQ7_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.940e-30
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    1 VVNRYIDQGVAELVPGVLFVDEVHMLDIECFTYLNRALESSLSPIVIFATNRGVCTIR 174
            VVNRYIDQGVAELVPGVLF+DEVHMLDIECFTYLNR+LES+LSPIV+FATNRGVC IR
Sbjct:   30 VVNRYIDQGVAELVPGVLFIDEVHMLDIECFTYLNRSLESTLSPIVVFATNRGVCKIR 87
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BLAST of mRNA_L-elsbetiae_contig6862.15620.1 vs. uniprot
Match: A0A7S4HCF4_9EUKA (RuvB-like helicase n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HCF4_9EUKA)

HSP 1 Score: 112 bits (281), Expect = 3.230e-30
Identity = 50/58 (86.21%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 VVNRYIDQGVAELVPGVLFVDEVHMLDIECFTYLNRALESSLSPIVIFATNRGVCTIR 174
            VVN+YIDQG+AELVPGVLF+DEVHMLDIECFTYLNRALES+L+PIV+FATNRG+CT+R
Sbjct:    6 VVNKYIDQGIAELVPGVLFIDEVHMLDIECFTYLNRALESTLAPIVVFATNRGMCTVR 63
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BLAST of mRNA_L-elsbetiae_contig6862.15620.1 vs. uniprot
Match: A0A7S0FMB1_9STRA (RuvB-like helicase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FMB1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.610e-30
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    1 VVNRYIDQGVAELVPGVLFVDEVHMLDIECFTYLNRALESSLSPIVIFATNRGVCTIR 174
            VVNRYIDQGVAELVPGVLFVDEVHMLDIECFTYLNR+LES+LSPIV+FATNRGVC IR
Sbjct:   52 VVNRYIDQGVAELVPGVLFVDEVHMLDIECFTYLNRSLESTLSPIVVFATNRGVCKIR 109
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BLAST of mRNA_L-elsbetiae_contig6862.15620.1 vs. uniprot
Match: UPI001C7A1E28 (Uncharacterized protein n=5 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C7A1E28)

HSP 1 Score: 110 bits (274), Expect = 3.670e-30
Identity = 50/57 (87.72%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 VVNRYIDQGVAELVPGVLFVDEVHMLDIECFTYLNRALESSLSPIVIFATNRGVCTI 171
            VVNRYID+GVAELVPGVLF+DEVHMLD+ECF+YLNRALESSLSPIVIFATNRG+C +
Sbjct:    4 VVNRYIDEGVAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNV 60
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6862.15620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A226NTH7_COLVI1.070e-3194.83RuvB-like helicase n=1 Tax=Colinus virginianus Tax... [more]
A0A444XCF9_ARAHY5.340e-3187.93RuvB-like helicase n=1 Tax=Arachis hypogaea TaxID=... [more]
UPI001C71B45F5.660e-3187.93ruvB-like protein 1 n=1 Tax=Carya illinoinensis Ta... [more]
A0A7J6PVB7_PEROL1.260e-3089.66RuvB-like helicase n=2 Tax=Perkinsus olseni TaxID=... [more]
A0A482SF84_9ARCH1.400e-3094.83AAA family ATPase (Fragment) n=1 Tax=archaeon TaxI... [more]
D8LJM6_ECTSI2.420e-30100.00RuvB-like helicase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S4WAQ7_9STRA2.940e-3091.38RuvB-like helicase n=1 Tax=Ditylum brightwellii Ta... [more]
A0A7S4HCF4_9EUKA3.230e-3086.21RuvB-like helicase n=1 Tax=Prymnesium polylepis Ta... [more]
A0A7S0FMB1_9STRA3.610e-3093.10RuvB-like helicase n=1 Tax=Minutocellus polymorphu... [more]
UPI001C7A1E283.670e-3087.72Uncharacterized protein n=5 Tax=Carya illinoinensi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6862contigL-elsbetiae_contig6862:5792..6506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue7.3e-25
Seed eggNOG ortholog2880.D8LJM6
Preferred nameRUVBL1
KEGG koko:K04499
KEGG Pathwayko04310,map04310
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000123,GO:0000166,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000491,GO:0000492,GO:0000785,GO:0000790,GO:0000812,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0002119,GO:0002164,GO:0002682,GO:0002831,GO:0003674,GO:0003678,GO:0003712,GO:0003713,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006355,GO:0006357,GO:0006417,GO:0006464,GO:0006473,GO:0006475,GO:0006508,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007507,GO:0008026,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009791,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010755,GO:0010756,GO:0010941,GO:0010954,GO:0015630,GO:0016020,GO:0016043,GO:0016363,GO:0016462,GO:0016569,GO:0016570,GO:0016573,GO:0016579,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017076,GO:0017111,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030111,GO:0030162,GO:0030177,GO:0030554,GO:0031011,GO:0031055,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031497,GO:0031929,GO:0031974,GO:0031981,GO:0032101,GO:0032268,GO:0032270,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033202,GO:0034080,GO:0034248,GO:0034250,GO:0034399,GO:0034508,GO:0034622,GO:0034708,GO:0034724,GO:0034728,GO:0035060,GO:0035097,GO:0035267,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040008,GO:0042127,GO:0042623,GO:0042981,GO:0043044,GO:0043067,GO:0043138,GO:0043139,GO:0043140,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043531,GO:0043543,GO:0043900,GO:0043933,GO:0043967,GO:0043968,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0044703,GO:0045088,GO:0045727,GO:0045862,GO:0045893,GO:0045935,GO:0046620,GO:0048232,GO:0048285,GO:0048507,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048609,GO:0048638,GO:0048731,GO:0048856,GO:0050776,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051117,GO:0051171,GO:0051173,GO:0051225,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051704,GO:0051716,GO:0060255,GO:0060303,GO:0060420,GO:0060828,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0070209,GO:0070603,GO:0070613,GO:0070646,GO:0070647,GO:0070925,GO:0071103,GO:0071339,GO:0071704,GO:0071824,GO:0071826,GO:0071840,GO:0072359,GO:0080090,GO:0080134,GO:0090263,GO:0090307,GO:0097159,GO:0097255,GO:0097346,GO:0097367,GO:0140014,GO:0140097,GO:0140110,GO:1900150,GO:1901265,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1902850,GO:1903047,GO:1903317,GO:1903319,GO:1903506,GO:1903508,GO:1904837,GO:1904949,GO:1990234,GO:1990904,GO:2000026,GO:2000072,GO:2000112,GO:2000269,GO:2001141
EggNOG free text desc.ATP-dependent 5'-3' DNA helicase activity
EggNOG OGsCOG1224@1,KOG1942@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Ec32 ortholog descriptionRuvB-like 1
Ec32 orthologEc-17_002640.1
Exons2
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.3958797-CDS-L-elsbetiae_contig6862:5791..58581622816759.3958797-CDS-L-elsbetiae_contig6862:5791..5858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6862 5792..5858 -
1691683792.043281-CDS-L-elsbetiae_contig6862:5791..58581691683792.043281-CDS-L-elsbetiae_contig6862:5791..5858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6862 5792..5858 -
1622816759.410587-CDS-L-elsbetiae_contig6862:6399..65061622816759.410587-CDS-L-elsbetiae_contig6862:6399..6506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6862 6400..6506 -
1691683792.057055-CDS-L-elsbetiae_contig6862:6399..65061691683792.057055-CDS-L-elsbetiae_contig6862:6399..6506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6862 6400..6506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6862.15620.1prot_L-elsbetiae_contig6862.15620.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6862 5792..6506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6862.15620.1

>prot_L-elsbetiae_contig6862.15620.1 ID=prot_L-elsbetiae_contig6862.15620.1|Name=mRNA_L-elsbetiae_contig6862.15620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=58bp
VVNRYIDQGVAELVPGVLFVDEVHMLDIECFTYLNRALESSLSPIVIFAT
NRGVCTIR
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mRNA from alignment at L-elsbetiae_contig6862:5792..6506-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6862.15620.1 ID=mRNA_L-elsbetiae_contig6862.15620.1|Name=mRNA_L-elsbetiae_contig6862.15620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=715bp|location=Sequence derived from alignment at L-elsbetiae_contig6862:5792..6506- (Laminarionema elsbetiae ELsaHSoW15)
GTGGTGAACCGATATATCGACCAGGGAGTCGCCGAGCTCGTGCCGGGGGT
GCTGTTCGTGGATGAGGTGCACATGCTGGACATCGAGTGCTTCACCTACC
TCAACAGGTGCGTGCTGTGCGCTGCGCGCTGATGGGCCTGTTCGGTTCGG
CTCTGTTCTGTTCGATTCGGTTTGGTTTGGTTCGGTTGTACGTGTGTGTT
TTCGGGTGTTTCGATTTAGTCGTGTGTAACTACGATAGTTTTGTTGTGTT
TGGACGAGGGTATGCACGTCCTGTGTAGTGGACACACACAAAGGTAGGGA
GATTCAGCTCCCCAAAGCATACGGTGCTGGGGGTGAGGGCGCCTGGTTAT
CTTCACCAGGGGAGCCATGCGTATCATCTCCAGACGTAGGTAGGCCAAGC
GCGTCGCGAAAAGCTGTGGCGCGCGGAGCGCATCCACCGCTCAGCTCAGT
CGATGCCTTTTCGTATTCTCTGTGGTGGGCATCAAAATGCCAGATCAGCC
GCCGACTTCTTGTTCGCCTTTCCTCTTTCTCATTTGTCTTTTATCTTATT
AAACGTTCAACAAAACGTCAGCGGGTCCGCGTCGGACATGCCGTGAAAAA
AAAATATTTTTCCTGCCGTTTCTTTTGATCCTCCCCGTCGATTTTTAGGG
CGCTGGAATCGAGCCTCAGCCCCATCGTTATCTTCGCCACCAACCGCGGC
GTGTGCACGATCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6862:5792..6506-

>mRNA_L-elsbetiae_contig6862.15620.1 ID=mRNA_L-elsbetiae_contig6862.15620.1|Name=mRNA_L-elsbetiae_contig6862.15620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=348bp|location=Sequence derived from alignment at L-elsbetiae_contig6862:5792..6506- (Laminarionema elsbetiae ELsaHSoW15)
GTGGTGAACCGATATATCGACCAGGGAGTCGCCGAGCTCGTGCCGGGGGT
GCTGTTCGTGGATGAGGTGCACATGCTGGACATCGAGTGCTTCACCTACC
TCAACAGGTGGTGAACCGATATATCGACCAGGGAGTCGCCGAGCTCGTGC
CGGGGGTGCTGTTCGTGGATGAGGTGCACATGCTGGACATCGAGTGCTTC
ACCTACCTCAACAGGGCGCTGGAATCGAGCCTCAGCCCCATCGTTATCTT
CGCCACCAACCGCGGCGTGTGCACGATCCGCGGCGCTGGAATCGAGCCTC
AGCCCCATCGTTATCTTCGCCACCAACCGCGGCGTGTGCACGATCCGC
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