prot_L-elsbetiae_contig6854.15611.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6854.15611.1
Unique Nameprot_L-elsbetiae_contig6854.15611.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length119
Homology
BLAST of mRNA_L-elsbetiae_contig6854.15611.1 vs. uniprot
Match: A0A6H5JST3_9PHAE (RNA_pol_L_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST3_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 5.790e-78
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0
Query:    1 RSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSTATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 118
            RSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALS ATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS
Sbjct:    6 RSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 123          
BLAST of mRNA_L-elsbetiae_contig6854.15611.1 vs. uniprot
Match: D7G4D0_ECTSI (RNA polymerase II core subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D0_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 3.140e-67
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 0
Query:   12 KKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSTATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 118
            ++LAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALS ATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS
Sbjct:   64 RRLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 170          
BLAST of mRNA_L-elsbetiae_contig6854.15611.1 vs. uniprot
Match: A0A836CIX8_9STRA (Putative DNA-directed RNA polymerase II 13.6 kDa polypeptide n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX8_9STRA)

HSP 1 Score: 154 bits (388), Expect = 4.040e-46
Identity = 76/116 (65.52%), Postives = 91/116 (78.45%), Query Frame = 0
Query:    1 RSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSTATEDLSQEMEGLREVFQEQVAAAKHAAEQEQF 116
            RSESWRLN+ E+K+ Y PDTKIP+AG F I KEDHTLGNL+RMQLL DRQVRFAGY+ PHPLEN + +KVQTNG+ TP+DALSTA EDL+ E++ L + F E V A K   E  Q+
Sbjct:    6 RSESWRLNEGEEKVDYEPDTKIPNAGNFIIKKEDHTLGNLIRMQLLQDRQVRFAGYLMPHPLENIMRVKVQTNGEVTPMDALSTAIEDLTSEVDNLTQRFAEGVLACKRLQESRQY 121          
BLAST of mRNA_L-elsbetiae_contig6854.15611.1 vs. uniprot
Match: K0SS38_THAOC (RNA_pol_L_2 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS38_THAOC)

HSP 1 Score: 120 bits (302), Expect = 5.020e-33
Identity = 59/97 (60.82%), Postives = 75/97 (77.32%), Query Frame = 0
Query:    1 RSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNT-PVDALSTATEDLSQEMEGL 96
            RS+++ L DDE+K+ Y PDTK+ +AGTF + KEDHT+GNLLRMQLL D QV+FAGYM PHPL N+IH+KVQT+     P ++LS A EDLS E + L
Sbjct:    7 RSDAFLLGDDEEKIEYQPDTKVANAGTFTLNKEDHTVGNLLRMQLLRDPQVKFAGYMHPHPLVNRIHLKVQTSTSQVAPTESLSAAIEDLSNETDHL 103          
BLAST of mRNA_L-elsbetiae_contig6854.15611.1 vs. uniprot
Match: A0A6U1NZH5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NZH5_9STRA)

HSP 1 Score: 120 bits (301), Expect = 7.770e-33
Identity = 60/105 (57.14%), Postives = 77/105 (73.33%), Query Frame = 0
Query:    1 RSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNT-PVDALSTATEDLSQEMEGLREVFQEQV 104
            RS+S+RL + EKKL Y PDTKIP+AGTF + +EDHTLGNLLRMQLL D  VRFAGY  PHPL + + +K+QT      P+ A+ST+ EDLS E + L + F+E +
Sbjct:    6 RSQSYRLAEGEKKLTYEPDTKIPNAGTFTLNREDHTLGNLLRMQLLQDSSVRFAGYQHPHPLVHHLLVKIQTTDPPANPIQAMSTSIEDLSSEFDFLEQRFKEDI 110          
BLAST of mRNA_L-elsbetiae_contig6854.15611.1 vs. uniprot
Match: F0Y9X2_AURAN (RNA_pol_L_2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9X2_AURAN)

HSP 1 Score: 114 bits (284), Expect = 2.350e-30
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 0
Query:    1 RSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDN-TPVDALSTATEDLSQEMEGLREVFQEQVAAAK 108
            R + ++L+DDEK++ Y  D KIP+AGTF I KEDHT+GNLLRMQ+L     +FAGY  PHPL N+  +K+QT   N TP+ A   A EDL  EM+ L   F+EQVA  K
Sbjct:    6 RHKKYQLDDDEKRMTYKNDEKIPNAGTFTINKEDHTVGNLLRMQILRSPDTKFAGYQLPHPLMNECRVKIQTTSANLTPIGAFQRAIEDLQSEMDILDRNFREQVAKKK 114          
BLAST of mRNA_L-elsbetiae_contig6854.15611.1 vs. uniprot
Match: B8C993_THAPS (Probable dna-directed RNA polymerase II 13.6 kDa polypeptide n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C993_THAPS)

HSP 1 Score: 112 bits (281), Expect = 7.970e-30
Identity = 56/97 (57.73%), Postives = 70/97 (72.16%), Query Frame = 0
Query:    1 RSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNT-PVDALSTATEDLSQEMEGL 96
            RS ++ L+DDE+K+ Y PDTK+ +AGTF   KEDHT+ NLLRMQLL D  V+FAGYM PHPL +KIH+K+QT      P + LS A EDLS E + L
Sbjct:    6 RSSAFLLDDDEEKIEYQPDTKVSNAGTFTFNKEDHTVANLLRMQLLRDPAVKFAGYMHPHPLIHKIHLKIQTTTSQVAPAETLSAAIEDLSNETDHL 102          
BLAST of mRNA_L-elsbetiae_contig6854.15611.1 vs. uniprot
Match: A0A7R9U3J4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3J4_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.310e-29
Identity = 55/106 (51.89%), Postives = 76/106 (71.70%), Query Frame = 0
Query:    1 RSESWR--LNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSTATEDLSQEMEGLREVFQEQV 104
            RSE W     D+E K+ Y  DTKIP+AGTF I++EDHTLGNLLRM+LL D+ VRFAGY+ PHPLE+ I ++VQ   + TP+ +++ A + L Q+ + L + F+ QV
Sbjct:    6 RSECWTSGYEDEENKVTYQKDTKIPNAGTFTIMREDHTLGNLLRMELLKDQNVRFAGYIAPHPLEHVIKLRVQAADNVTPIRSVTQAVDHLQQQFDTLSKSFESQV 111          
BLAST of mRNA_L-elsbetiae_contig6854.15611.1 vs. uniprot
Match: A0A0K0DYM0_STRER (RNA_pol_L_2 domain-containing protein n=5 Tax=Strongyloididae TaxID=6246 RepID=A0A0K0DYM0_STRER)

HSP 1 Score: 110 bits (276), Expect = 4.320e-29
Identity = 53/102 (51.96%), Postives = 69/102 (67.65%), Query Frame = 0
Query:    3 ESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSTATEDLSQEMEGLREVFQEQV 104
            ES+ + D EKK+++  DTK+P+A  FEI+KEDHTLGNLL+ QLL D  V FAGY  PHPLE+K H+++QT  D TP   L  A  DL  E+    + F+E V
Sbjct:    8 ESFLMLDGEKKISFEKDTKVPNAAIFEIVKEDHTLGNLLKHQLLKDPNVLFAGYRNPHPLEHKFHLRIQTTPDTTPTQVLLDAISDLIAELSMTEQYFKESV 109          
BLAST of mRNA_L-elsbetiae_contig6854.15611.1 vs. uniprot
Match: RPB11_DICDI (DNA-directed RNA polymerase II subunit rpb11 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=RPB11_DICDI)

HSP 1 Score: 109 bits (272), Expect = 1.650e-28
Identity = 53/113 (46.90%), Postives = 76/113 (67.26%), Query Frame = 0
Query:    1 RSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSTATEDLSQEMEGLREVFQEQVAAAKHAAEQ 113
            R E + L D  KK+    DTKIP+A  F I+KEDHT+GNL+RMQL+AD+ + FAGY  PHPLE+ ++I++QTN +  P++ +  + E LS+E   L   F EQV   ++ A+Q
Sbjct:    6 RFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAGYRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQKKRNVADQ 118          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6854.15611.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JST3_9PHAE5.790e-7899.15RNA_pol_L_2 domain-containing protein n=1 Tax=Ecto... [more]
D7G4D0_ECTSI3.140e-6797.20RNA polymerase II core subunit n=1 Tax=Ectocarpus ... [more]
A0A836CIX8_9STRA4.040e-4665.52Putative DNA-directed RNA polymerase II 13.6 kDa p... [more]
K0SS38_THAOC5.020e-3360.82RNA_pol_L_2 domain-containing protein n=1 Tax=Thal... [more]
A0A6U1NZH5_9STRA7.770e-3357.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0Y9X2_AURAN2.350e-3053.21RNA_pol_L_2 domain-containing protein n=1 Tax=Aure... [more]
B8C993_THAPS7.970e-3057.73Probable dna-directed RNA polymerase II 13.6 kDa p... [more]
A0A7R9U3J4_9STRA1.310e-2951.89Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0K0DYM0_STRER4.320e-2951.96RNA_pol_L_2 domain-containing protein n=5 Tax=Stro... [more]
RPB11_DICDI1.650e-2846.90DNA-directed RNA polymerase II subunit rpb11 n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 79..99
NoneNo IPR availablePANTHERPTHR13946:SF16DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11coord: 1..114
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 1..114
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 27..97
e-value: 2.5E-27
score: 94.4
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 1..115
e-value: 7.0E-41
score: 140.5
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 3..105
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 30..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6854contigL-elsbetiae_contig6854:2374..4863 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6854.15611.1mRNA_L-elsbetiae_contig6854.15611.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6854 2374..4863 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6854.15611.1 ID=prot_L-elsbetiae_contig6854.15611.1|Name=mRNA_L-elsbetiae_contig6854.15611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
RSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQ
VRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSTATEDLSQEMEGLREVF
QEQVAAAKHAAEQEQFGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009025RBP11-like_dimer
IPR036603RBP11-like
IPR008193RNA_pol_Rpb11_13-16kDa_CS