mRNA_L-elsbetiae_contig6842.15601.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6842.15601.1
Unique NamemRNA_L-elsbetiae_contig6842.15601.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6842.15601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6842contigL-elsbetiae_contig6842:9046..9563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size518
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816757.5543554-CDS-L-elsbetiae_contig6842:9045..94141622816757.5543554-CDS-L-elsbetiae_contig6842:9045..9414Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6842 9046..9414 +
1691683790.5984118-CDS-L-elsbetiae_contig6842:9045..94141691683790.5984118-CDS-L-elsbetiae_contig6842:9045..9414Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6842 9046..9414 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816757.567554-UTR-L-elsbetiae_contig6842:9414..95631622816757.567554-UTR-L-elsbetiae_contig6842:9414..9563Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6842 9415..9563 +
1691683790.619579-UTR-L-elsbetiae_contig6842:9414..95631691683790.619579-UTR-L-elsbetiae_contig6842:9414..9563Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6842 9415..9563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6842.15601.1prot_L-elsbetiae_contig6842.15601.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6842 9046..9414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6842.15601.1

>prot_L-elsbetiae_contig6842.15601.1 ID=prot_L-elsbetiae_contig6842.15601.1|Name=mRNA_L-elsbetiae_contig6842.15601.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
LGGRRGGGREVDFVAAAQPPLPELGLRLVFREVFSLLSQELLATQQLCGI
GVLCCRVGLDRVNSLGCAGFTPFGCFGKSQVKHPQCLCSRSHCFLKPLHS
RAGLLYGDFDDVFFLTTAVAGN*
back to top

mRNA from alignment at L-elsbetiae_contig6842:9046..9563+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6842.15601.1 ID=mRNA_L-elsbetiae_contig6842.15601.1|Name=mRNA_L-elsbetiae_contig6842.15601.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=518bp|location=Sequence derived from alignment at L-elsbetiae_contig6842:9046..9563+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGGAGGGAGGCGGGGAGGGGGAAGGGAGGTAGATTTTGTAGCTGCCGC
ACAGCCGCCACTCCCAGAACTGGGGCTTCGTTTGGTATTTCGCGAGGTCT
TTTCTCTGTTGTCGCAGGAACTGCTCGCGACGCAGCAGCTCTGCGGAATT
GGAGTGCTGTGCTGCAGAGTTGGTTTGGACCGGGTGAATAGCCTGGGCTG
TGCAGGCTTTACACCGTTTGGTTGTTTTGGGAAGTCGCAAGTTAAGCATC
CGCAGTGTTTGTGTTCACGCTCTCACTGTTTCTTGAAGCCGCTCCATAGT
CGGGCAGGGCTTCTATACGGCGATTTTGACGATGTATTTTTCTTAACTAC
TGCTGTTGCTGGAAACTGATGCTCGGTGCAACGTGTGTCCAGGCGCCCAC
ACGGGCTCGGGAGGACATGGGGTGGTTCTCGACGGGGAGACTCGCCTGTT
TCGACGCCCTTCATGTCGAGTGATCGTAGTGTGGTCGACTTCTTTTCCCG
CGCGCGACAGGGGTAGAT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6842:9046..9563+

>mRNA_L-elsbetiae_contig6842.15601.1 ID=mRNA_L-elsbetiae_contig6842.15601.1|Name=mRNA_L-elsbetiae_contig6842.15601.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig6842:9046..9563+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGGAGGGAGGCGGGGAGGGGGAAGGGAGGTAGATTTTGTAGCTGCCGC
ACAGCCGCCACTCCCAGAACTGGGGCTTCGTTTGGTATTTCGCGAGGTCT
TTTCTCTGTTGTCGCAGGAACTGCTCGCGACGCAGCAGCTCTGCGGAATT
GGAGTGCTGTGCTGCAGAGTTGGTTTGGACCGGGTGAATAGCCTGGGCTG
TGCAGGCTTTACACCGTTTGGTTGTTTTGGGAAGTCGCAAGTTAAGCATC
CGCAGTGTTTGTGTTCACGCTCTCACTGTTTCTTGAAGCCGCTCCATAGT
CGGGCAGGGCTTCTATACGGCGATTTTGACGATGTATTTTTCTTAACTAC
TGCTGTTGCTGGAAACTGACTTGGAGGGAGGCGGGGAGGGGGAAGGGAGG
TAGATTTTGTAGCTGCCGCACAGCCGCCACTCCCAGAACTGGGGCTTCGT
TTGGTATTTCGCGAGGTCTTTTCTCTGTTGTCGCAGGAACTGCTCGCGAC
GCAGCAGCTCTGCGGAATTGGAGTGCTGTGCTGCAGAGTTGGTTTGGACC
GGGTGAATAGCCTGGGCTGTGCAGGCTTTACACCGTTTGGTTGTTTTGGG
AAGTCGCAAGTTAAGCATCCGCAGTGTTTGTGTTCACGCTCTCACTGTTT
CTTGAAGCCGCTCCATAGTCGGGCAGGGCTTCTATACGGCGATTTTGACG
ATGTATTTTTCTTAACTACTGCTGTTGCTGGAAACTGA
back to top