mRNA_L-elsbetiae_contig6831.15592.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6831.15592.1
Unique NamemRNA_L-elsbetiae_contig6831.15592.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6831.15592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6831contigL-elsbetiae_contig6831:6617..7051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size435
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6831.15592.1prot_L-elsbetiae_contig6831.15592.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6831 6660..7046 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.7486513-UTR-L-elsbetiae_contig6831:6616..66591622816756.7486513-UTR-L-elsbetiae_contig6831:6616..6659Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6831 6617..6659 +
1691683790.063574-UTR-L-elsbetiae_contig6831:6616..66591691683790.063574-UTR-L-elsbetiae_contig6831:6616..6659Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6831 6617..6659 +
1622816756.769908-UTR-L-elsbetiae_contig6831:7046..70511622816756.769908-UTR-L-elsbetiae_contig6831:7046..7051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6831 7047..7051 +
1691683790.0793285-UTR-L-elsbetiae_contig6831:7046..70511691683790.0793285-UTR-L-elsbetiae_contig6831:7046..7051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6831 7047..7051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.759275-CDS-L-elsbetiae_contig6831:6659..70461622816756.759275-CDS-L-elsbetiae_contig6831:6659..7046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6831 6660..7046 +
1691683790.0717854-CDS-L-elsbetiae_contig6831:6659..70461691683790.0717854-CDS-L-elsbetiae_contig6831:6659..7046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6831 6660..7046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6831.15592.1

>prot_L-elsbetiae_contig6831.15592.1 ID=prot_L-elsbetiae_contig6831.15592.1|Name=mRNA_L-elsbetiae_contig6831.15592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MMMFGRSEQAFSTCNEQRVSWPRGRKGGRHRSVSERVENVSRRRGRESDT
RHRHFMERVHKYANANDGSWAINEVIWVGLWLLQFRFKRLLLPSDEKRPR
SIDLQYRCREKKKKEYFKKAQVSVTMTL*
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mRNA from alignment at L-elsbetiae_contig6831:6617..7051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6831.15592.1 ID=mRNA_L-elsbetiae_contig6831.15592.1|Name=mRNA_L-elsbetiae_contig6831.15592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=435bp|location=Sequence derived from alignment at L-elsbetiae_contig6831:6617..7051+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTTGTCGGGGACGATCTCCGCCGCATGCTCCTTTCGCGGTCATGATGA
TGTTCGGTCGTTCTGAGCAGGCTTTCTCCACCTGCAACGAGCAACGTGTG
TCGTGGCCGAGGGGACGGAAGGGCGGAAGGCATCGATCAGTTAGTGAACG
TGTCGAAAATGTGTCGCGGCGAAGGGGACGGGAGAGCGATACAAGGCATC
GCCATTTCATGGAACGTGTCCATAAATATGCAAATGCAAACGACGGTTCT
TGGGCAATAAATGAAGTTATTTGGGTCGGGCTGTGGCTGCTTCAATTCCG
ATTCAAGCGTCTTCTGCTTCCATCAGACGAGAAACGACCGCGGAGCATCG
ATCTACAATACAGGTGTCGTGAGAAAAAGAAAAAAGAGTATTTTAAAAAG
GCACAGGTCAGTGTAACTATGACATTATAGCCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6831:6617..7051+

>mRNA_L-elsbetiae_contig6831.15592.1 ID=mRNA_L-elsbetiae_contig6831.15592.1|Name=mRNA_L-elsbetiae_contig6831.15592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig6831:6617..7051+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGATGTTCGGTCGTTCTGAGCAGGCTTTCTCCACCTGCAACGAGCA
ACGTGTGTCGTGGCCGAGGGGACGGAAGGGCGGAAGGCATCGATCAGTTA
GTGAACGTGTCGAAAATGTGTCGCGGCGAAGGGGACGGGAGAGCGATACA
AGGCATCGCCATTTCATGGAACGTGTCCATAAATATGCAAATGCAAACGA
CGGTTCTTGGGCAATAAATGAAGTTATTTGGGTCGGGCTGTGGCTGCTTC
AATTCCGATTCAAGCGTCTTCTGCTTCCATCAGACGAGAAACGACCGCGG
AGCATCGATCTACAATACAGGTGTCGTGAGAAAAAGAAAAAAGAGTATTT
TAAAAAGGCACAGGTCAGTGTAACTATGACATTATAGATGATGATGTTCG
GTCGTTCTGAGCAGGCTTTCTCCACCTGCAACGAGCAACGTGTGTCGTGG
CCGAGGGGACGGAAGGGCGGAAGGCATCGATCAGTTAGTGAACGTGTCGA
AAATGTGTCGCGGCGAAGGGGACGGGAGAGCGATACAAGGCATCGCCATT
TCATGGAACGTGTCCATAAATATGCAAATGCAAACGACGGTTCTTGGGCA
ATAAATGAAGTTATTTGGGTCGGGCTGTGGCTGCTTCAATTCCGATTCAA
GCGTCTTCTGCTTCCATCAGACGAGAAACGACCGCGGAGCATCGATCTAC
AATACAGGTGTCGTGAGAAAAAGAAAAAAGAGTATTTTAAAAAGGCACAG
GTCAGTGTAACTATGACATTATAG
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