mRNA_L-elsbetiae_contig683.15589.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig683.15589.1
Unique NamemRNA_L-elsbetiae_contig683.15589.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig683.15589.1 vs. uniprot
Match: A0A835YWC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC0_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.690e-13
Identity = 59/186 (31.72%), Postives = 83/186 (44.62%), Query Frame = 1 
Query:   19 LDMTQASTVQEAMRDRPAEDRGFSSLFSQTQPIGSSMVCSKEWETTSRAAFGVPKRACTTGHRVLHVPSAPPGGWVEPRARLEKPPPDGQSLAKRTTRS-RPIGERFMEGEDPIQSTAAQRSWVNSHDPVIKYHHEGVPA-PPSPRGLSLAIGEGPRSATATNKRSRNITLEREPAAEKGTSIWID 570
            +DM Q  ++ E +R RP  D GF+S  +             E + T        K  CTT         A   G ++    + +        A   TRS RP+GER+    DP  +TAAQRSW+ S DPV+KY  EGVPA    P  +  A       A  + +R R+IT   +P   +G ++W D
Sbjct:   69 VDMVQHHSMTEVLRPRPVVDAGFNSAVA------------GEMQGTRPQGGAQSKVFCTTT-------MAQQAGGIQGDGHMPEQTSRTACAAAAGTRSHRPLGERYNADADPHCNTAAQRSWLYSLDPVVKYQQEGVPALEEGPCWVGDAGNALALHADGSARRVRSITARNDPMVTQGVTVWND 235
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig683.15589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YWC0_9STRA1.690e-1331.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig683contigL-elsbetiae_contig683:29873..33308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_003595.1
Exons6
Model size891
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig683.15589.1prot_L-elsbetiae_contig683.15589.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig683 29897..33014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.56941-UTR-L-elsbetiae_contig683:29872..298961622816756.56941-UTR-L-elsbetiae_contig683:29872..29896Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig683 29873..29896 +
1691683789.953485-UTR-L-elsbetiae_contig683:29872..298961691683789.953485-UTR-L-elsbetiae_contig683:29872..29896Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig683 29873..29896 +
1622816756.6613834-UTR-L-elsbetiae_contig683:33014..333081622816756.6613834-UTR-L-elsbetiae_contig683:33014..33308Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig683 33015..33308 +
1691683790.0243752-UTR-L-elsbetiae_contig683:33014..333081691683790.0243752-UTR-L-elsbetiae_contig683:33014..33308Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig683 33015..33308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.5827358-CDS-L-elsbetiae_contig683:29896..299371622816756.5827358-CDS-L-elsbetiae_contig683:29896..29937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig683 29897..29937 +
1691683789.9679327-CDS-L-elsbetiae_contig683:29896..299371691683789.9679327-CDS-L-elsbetiae_contig683:29896..29937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig683 29897..29937 +
1622816756.5962934-CDS-L-elsbetiae_contig683:30410..304631622816756.5962934-CDS-L-elsbetiae_contig683:30410..30463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig683 30411..30463 +
1691683789.9771821-CDS-L-elsbetiae_contig683:30410..304631691683789.9771821-CDS-L-elsbetiae_contig683:30410..30463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig683 30411..30463 +
1622816756.6097517-CDS-L-elsbetiae_contig683:30812..309041622816756.6097517-CDS-L-elsbetiae_contig683:30812..30904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig683 30813..30904 +
1691683789.986371-CDS-L-elsbetiae_contig683:30812..309041691683789.986371-CDS-L-elsbetiae_contig683:30812..30904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig683 30813..30904 +
1622816756.6223714-CDS-L-elsbetiae_contig683:31470..316031622816756.6223714-CDS-L-elsbetiae_contig683:31470..31603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig683 31471..31603 +
1691683789.995448-CDS-L-elsbetiae_contig683:31470..316031691683789.995448-CDS-L-elsbetiae_contig683:31470..31603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig683 31471..31603 +
1622816756.6358883-CDS-L-elsbetiae_contig683:32208..323561622816756.6358883-CDS-L-elsbetiae_contig683:32208..32356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig683 32209..32356 +
1691683790.004842-CDS-L-elsbetiae_contig683:32208..323561691683790.004842-CDS-L-elsbetiae_contig683:32208..32356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig683 32209..32356 +
1622816756.6496813-CDS-L-elsbetiae_contig683:32908..330141622816756.6496813-CDS-L-elsbetiae_contig683:32908..33014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig683 32909..33014 +
1691683790.0142643-CDS-L-elsbetiae_contig683:32908..330141691683790.0142643-CDS-L-elsbetiae_contig683:32908..33014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig683 32909..33014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig683.15589.1

>prot_L-elsbetiae_contig683.15589.1 ID=prot_L-elsbetiae_contig683.15589.1|Name=mRNA_L-elsbetiae_contig683.15589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=191bp
MTQASTVQEAMRDRPAEDRGFSSLFSQTQPIGSSMVCSKEWETTSRAAFG
VPKRACTTGHRVLHVPSAPPGGWVEPRARLEKPPPDGQSLAKRTTRSRPI
GERFMEGEDPIQSTAAQRSWVNSHDPVIKYHHEGVPAPPSPRGLSLAIGE
GPRSATATNKRSRNITLEREPAAEKGTSIWIDWHIAPGEA*
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mRNA from alignment at L-elsbetiae_contig683:29873..33308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig683.15589.1 ID=mRNA_L-elsbetiae_contig683.15589.1|Name=mRNA_L-elsbetiae_contig683.15589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3436bp|location=Sequence derived from alignment at L-elsbetiae_contig683:29873..33308+ (Laminarionema elsbetiae ELsaHSoW15)
TTCGCCAACCCCGGACGGTTAGACATGACCCAGGCCAGCACGGTACAGGA
GGCCATGCGTGACAGGTGAATTTCGGATGTGTGTATGGCACACGCATATT
TAGATATTGAAGTAGTGACAAAACTTCGAAGACCCGCTGCTTTTCGCTCC
TTGGCAAACGTGAGGTGTGACATTGTGCGAGAAGAGTTTTCGCGTCAGCT
CAGGTCAACACCCCCCCCTTCCCCTTTACCAAAATATAGTTCTTGAACTA
CGAGTATGTAGCGACGACGCGCTTTTTTTAGTCTCCGACAGCTTTTGCGC
CACTTTTGGCAAGACGTGCAAGACGCTTTGCCGCATCCTCCTTCCACAGA
GACTGTTGGGAACTCGAAACCCTAACGGCGCCGTCACCAATTCGACTGCA
CGGGCAGCGCGGCACCAAAGGTTGCCGCGATGCTGTCGGTGACCGTTTGT
CGGTTACGCGCTCGTTGGCGGTGAACTAATCTTGGTCAGTTTTCGAAATG
CCCTCCCTTTCGTGTCTCACGCTCTGCCCTGTCCCAAGACCTGCCGAAGA
TCGAGGTTTCAGCTCTCTATTCAGTCAGACTCAACCTATCGGTGAGAACG
AAGAAGACAGCACAGCTAAAATGTATTCCGGCGAAAAGTCGTCCGGATGC
TCCCAAGAAAGTTTCTCTTTTCGCGACTACACTTGACTCTGTGTACTTGC
GTTCGAGCAATTATTACCCCGCTACATCGATGTTTAGCATCTAACACACG
CTGTGTGATCAAGTTCGCAATAGGATCCTCGGAGCAGCACCTCTCTCCAA
ACAAAGCAGTTGGACTTCCGCCACTGCGCTTGAACTCCTCAGCTAGGTGA
ACCATGTATGTTGGGATACTGAAGGTTTTCCTGGCCCTGCTAACATGTGC
ACATGTTTCCTCTGCGTCCGGCCGGCCTCCTTGGCAGCAGGCTCCTCCAT
GGTCTGTTCGAAGGAGTGGGAAACGACTAGTCGTGCGGCGTTCGGAGTGC
CAAAGCGCGCTTGCACGACAGGACACAGAGTGGTGAGTGACAAACGACCT
AGAACGGGGTGGATGTGCAAAGCTAGAACCGGTGTTGGGTGGTCCATTCC
ATGGCAGCAAAGGGTGTCGGCGTGTATGTGTCGGCAGCCCCTGTTTCTTG
GCAGACAAGAGCGCATGCCTGGCCTCAAATGCGGTGGGTTCACCTTCGGC
GGGAAGTAGGTTTTGGTTGCGGTCCTCGAGTTCAAACGTTTGGCTCTTTA
AGGCTTTGGTGGCCCCCTGCCGGTCGTATTGGTCGCTTTTCAACCGGGAA
GGCGATCGTACCGCGGTGCTTAACAGACACCACATTATTATTGCTGCCCA
AGCTAAGGACATCCGCGCACGCGTCGTGCGTAAGAACCAGCATGTTGGAG
TTTTCGCCGACTTACCGACGCCGGAGCGCACCTGTGTTTCATACTATGCA
CCATGCCCGATTTCCAAAAGGGTGGTGTTCTAGACGGAAGGGGTTAATCC
CTCTGTGCTTGTGTAGATTGATACCTGTACAGTCTTCAACTGTCGCCTAC
AGACGACCATGTTTCAACTCGCTCTGGTCGTTCTCCGTGTGTTGGCAGCT
GCATGTGCCGAGCGCTCCCCCAGGGGGTTGGGTCGAGCCCAGGGCACGGC
TGGAAAAACCTCCCCCCGATGGGCAGAGTTTAGCTAAACGAACAACCCGC
TCCAGGCCGATCGGCGAGAGGTTTATGGAAGGTAACACGCCCTTCGTTGA
CTCGTGGCAAAAACTGTTTACTCAGAATAAAGTGCGTGGTGTTCGCGATG
CAGGGGCCCGGCCCGCAAAAGGCCCAAAATGTTGGAGAAAAAAATACCAA
AAGTCGGGCGAGGCAATCGAGCAGGTCACATGCTTAGGTTAGCTCCCCCC
TCTCTCTCTCCGAGTACCTCTAACCCCTAGAAATGTTTAGTGTGCCTATC
TAGGCTTGAGCCATTAGTTGTGACACGCGTGAGATGAGGCACTCGGAAAT
TTGAACGGGGTTTGCCAACCCGTTGTGCCAATGCCATGTCCAGCAAACCG
TGCCGGCGTAGTCTATAGTCTAATGGGTCTGGGCTGGGTTGTTGAACACG
GTATCTGTCTTCTCCCCGCCCTTCGCCGTCCCTGGTCGACCAACGTCTGC
GCCTTTTTTCCAACCTACCCCCGATTTCACACTTCATCGGCAGCTTAGAT
ATATACACATTTGCTTCACACCGAGTACATACATAGCTGTTTTGTGCCCG
CTAAGCTCGGACGTCCCTGATTGGTCGGCTCTGGCCGCGTGCCATCTTCT
TGCGATTACTTAATTGTACGGTCACAACAAACACAGGCGAAGACCCCATT
CAGAGCACGGCCGCCCAACGCTCGTGGGTGAACTCGCACGACCCGGTCAT
CAAGTACCACCACGAAGGCGTCCCTGCTCCGCCCTCGCCCAGGGGGCTCA
GTCTCGCCATAGGCGAGGGACCTAGAAGCGCAACGTGAGCGAGCGTGACA
GTTTCACTGCATATTTACAGCTAAATTTCGTACACACATATTGTCGAGGG
GGAAAGGTAGCGCAGTGCGAGACGGCTGAACGCCTCTCGCGCTAAAAATC
GAAGGGATGCACCGCAGAAGGGGGCTGTGGGGGCCTCAGGGGAGGAGCGC
TTCTGTGTGAACACGGAGCAAAGCTCTGGCAAGGTGCCCCTCGAGTGTTG
GCATAATGTGATAAACATACCATAGGAAAAAAAACGCGAGATGTTGCGGC
TTCGTACTTCAGTAGCTCTTGTGTTTATCCTCCGAGGGAGGGGGCCGTTA
GCATGATAGCACGAGTCGGTGTCGCTATCTTTGCAAGTCGCTAAATCGTA
CAGTGATTTGTGTTGCTCGTCGTTGTACAAACTCGTGAAGGCGCTCCTCA
TACCTACACACGGCACCCGGTGTAACCCATCATCCGCCAAGGGCCAGCAA
CCATATTTCCGCCCTTCCACCCCACCAAAGGACAGAGACATGCGTCGTCT
AACGTTTCATCGTTTCGCTTTCGTTTTTTCTCACAGAGCGACCAACAAAC
GCTCTCGGAACATCACACTGGAGCGCGAGCCGGCCGCCGAGAAGGGGACT
AGCATCTGGATCGACTGGCACATTGCCCCTGGAGAGGCATAGTCTAGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGCTGTTGCCATACCCGTCCCCACGAG
GGCAGTGATGAGATCGGGCCAGAAAAATATATACCGCGTGCTTGTAACGA
CCCTGCTCGATCGGAAGGGTATGCTATAGGTCATAACTGGGTTGCCCGGC
CGTGACGTACATTTATTTGGTTATTTTGGTTCCCCGCGTCTTGCTCTCGG
GCCACTGCCGGTCTCTGCCTTGATGCCTTCCTCTCACTTTTGTTTTATTT
TATTTTGCCCCCCCCCCCCTCTTCCGCACTGCACCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig683:29873..33308+

>mRNA_L-elsbetiae_contig683.15589.1 ID=mRNA_L-elsbetiae_contig683.15589.1|Name=mRNA_L-elsbetiae_contig683.15589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig683:29873..33308+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCCAGGCCAGCACGGTACAGGAGGCCATGCGTGACAGATGACCCAG
GCCAGCACGGTACAGGAGGCCATGCGTGACAGACCTGCCGAAGATCGAGG
TTTCAGCTCTCTATTCAGTCAGACTCAACCTATCGACCTGCCGAAGATCG
AGGTTTCAGCTCTCTATTCAGTCAGACTCAACCTATCGGCTCCTCCATGG
TCTGTTCGAAGGAGTGGGAAACGACTAGTCGTGCGGCGTTCGGAGTGCCA
AAGCGCGCTTGCACGACAGGACACAGAGTGGCTCCTCCATGGTCTGTTCG
AAGGAGTGGGAAACGACTAGTCGTGCGGCGTTCGGAGTGCCAAAGCGCGC
TTGCACGACAGGACACAGAGTGCTGCATGTGCCGAGCGCTCCCCCAGGGG
GTTGGGTCGAGCCCAGGGCACGGCTGGAAAAACCTCCCCCCGATGGGCAG
AGTTTAGCTAAACGAACAACCCGCTCCAGGCCGATCGGCGAGAGGTTTAT
GGAAGCTGCATGTGCCGAGCGCTCCCCCAGGGGGTTGGGTCGAGCCCAGG
GCACGGCTGGAAAAACCTCCCCCCGATGGGCAGAGTTTAGCTAAACGAAC
AACCCGCTCCAGGCCGATCGGCGAGAGGTTTATGGAAGGCGAAGACCCCA
TTCAGAGCACGGCCGCCCAACGCTCGTGGGTGAACTCGCACGACCCGGTC
ATCAAGTACCACCACGAAGGCGTCCCTGCTCCGCCCTCGCCCAGGGGGCT
CAGTCTCGCCATAGGCGAGGGACCTAGAAGCGCAACGCGAAGACCCCATT
CAGAGCACGGCCGCCCAACGCTCGTGGGTGAACTCGCACGACCCGGTCAT
CAAGTACCACCACGAAGGCGTCCCTGCTCCGCCCTCGCCCAGGGGGCTCA
GTCTCGCCATAGGCGAGGGACCTAGAAGCGCAACAGCGACCAACAAACGC
TCTCGGAACATCACACTGGAGCGCGAGCCGGCCGCCGAGAAGGGGACTAG
CATCTGGATCGACTGGCACATTGCCCCTGGAGAGGCATAGAGCGACCAAC
AAACGCTCTCGGAACATCACACTGGAGCGCGAGCCGGCCGCCGAGAAGGG
GACTAGCATCTGGATCGACTGGCACATTGCCCCTGGAGAGGCATAG
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