mRNA_L-elsbetiae_contig6827.15586.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6827.15586.1
Unique NamemRNA_L-elsbetiae_contig6827.15586.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6827.15586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6827contigL-elsbetiae_contig6827:1173..6304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size379
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6827.15586.1prot_L-elsbetiae_contig6827.15586.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6827 1284..6255 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.2329283-UTR-L-elsbetiae_contig6827:1172..12831622816756.2329283-UTR-L-elsbetiae_contig6827:1172..1283Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6827 1173..1283 +
1691683789.7176893-UTR-L-elsbetiae_contig6827:1172..12831691683789.7176893-UTR-L-elsbetiae_contig6827:1172..1283Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6827 1173..1283 +
1622816756.2677834-UTR-L-elsbetiae_contig6827:6255..63041622816756.2677834-UTR-L-elsbetiae_contig6827:6255..6304Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6827 6256..6304 +
1691683789.7534938-UTR-L-elsbetiae_contig6827:6255..63041691683789.7534938-UTR-L-elsbetiae_contig6827:6255..6304Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6827 6256..6304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.2437875-CDS-L-elsbetiae_contig6827:1283..14681622816756.2437875-CDS-L-elsbetiae_contig6827:1283..1468Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6827 1284..1468 +
1691683789.7297673-CDS-L-elsbetiae_contig6827:1283..14681691683789.7297673-CDS-L-elsbetiae_contig6827:1283..1468Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6827 1284..1468 +
1622816756.2554107-CDS-L-elsbetiae_contig6827:6221..62551622816756.2554107-CDS-L-elsbetiae_contig6827:6221..6255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6827 6222..6255 +
1691683789.7384174-CDS-L-elsbetiae_contig6827:6221..62551691683789.7384174-CDS-L-elsbetiae_contig6827:6221..6255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6827 6222..6255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6827.15586.1

>prot_L-elsbetiae_contig6827.15586.1 ID=prot_L-elsbetiae_contig6827.15586.1|Name=mRNA_L-elsbetiae_contig6827.15586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MRAPASAPAPAPARPLPTPQPLWTRKSAARTVLSSLLAAIVLSSAKWRPR
RLQHEQDSSNIGRGEGHDGSRA*
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mRNA from alignment at L-elsbetiae_contig6827:1173..6304+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6827.15586.1 ID=mRNA_L-elsbetiae_contig6827.15586.1|Name=mRNA_L-elsbetiae_contig6827.15586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5132bp|location=Sequence derived from alignment at L-elsbetiae_contig6827:1173..6304+ (Laminarionema elsbetiae ELsaHSoW15)
TACGAGTTTCCCCTGCTCGCGTTCGCGGTTGTCAGCTATAAAGTAGTGCT
GTGTACCGCATCGAAGATCCAGCCGACAGATATAGACCGTCAATGATATA
GGCGCATCAGCATGAGAGCACCAGCATCAGCACCAGCACCAGCACCAGCA
CGTCCGCTGCCAACGCCACAGCCGTTATGGACACGCAAGTCGGCAGCAAG
AACCGTTCTGTCATCCCTACTGGCGGCCATCGTTTTAAGCAGCGCAAAAT
GGCGCCCCCGGCGGCTTCAACACGAACAAGACAGCAGCAATATTGGGTGA
GGGGCAGTTGTGGGTGTTTATCGTGTCCTATGTTTTGCTTGTTACGCAGG
ACTTTGTGGCTATCCAAGTAACACCTAATTCAGAAGTATCCCCTGCGTAT
CAGGGGGTGGGTCTTGAACCTTTTGGTACTAGTACATATGGTACATACCT
ACATAAAAGAGCATGGCCATAAATGGGTACACCCGAACGGAACCCGGCCA
AGAACGGGTACCCTAATATTTCTACACGAAAAGTCTCCCCGGACCATGTG
ACCCTCTAGGGTTTCTGAACTGTCATCATGTGTCGTGCATGTATCATGAG
GGCGTTTGACGTCGTCGTTGTCCATGGCGAACACCATCACTCATTATCGG
TTCGGTGGTCAAGTTCCCCTGGTAGGTACTATGATTATGTTCTGCCGCGC
CTTGGCGTGGCCACCGCGGGTGACGCGGCTGCGTTGTCGATGTTGTTTTT
GTTTCTCGCATTAGCTCTCTAGTCCAAAACATCCTTGGGGGCCCTTGGTC
ACAAAGCAAGGCACACTCGACGCCGAAGAAGAAAAAAAGTCGTGCGCTTG
TGCGTGTGTGGGCTGTTGTTTGAGTAGTCTGCTGTGGCCATAATCGGGTA
CGGGTAATGAGAACCGGGTACACCTCCGAGGGTTGAATAGCCAGAATCGG
GTGTACCCGGCGGAAATACGGCCACAATTGGGTACTGGGCGGGAACTTTC
ATTGGTATATTCAATAGGGTACCCGTTTTTGGCCGGATACCATTCGGGTG
TACCCGTTTTGGGCCATTGCTCTACATAGAAGCCCGTTTAGCGACGATTT
GGCGACACCTAACATGTTCGGTATATGTTCATGGTTGAGCTTCAGAGATC
AGAAGATGCTGTTAACCGCATGTATTAACTTGTAGAGGAGACATGAGAGA
GGGGGGAAGGAGAGGAGAGTGGGCCCAAACGTTCGAGAAAGGGGGCTCCG
CAGTCACATCCAAAAAGGCTCTCAATGCATACGCTCAAGGTTGTTCCTAT
CTGCGTCATACGAAACGCCAGAATATCTGTCAACCAGCCAACTACCTTCT
ACACACGAACATAACTTTGGTCACTGGTTTATGACTTTGGGGTGCACGGA
CGGTCTTGGTATCCCGTACAAAGGTCTGGGAGTACCCTGCCAAGTTGTAT
AGACACTTTACCTACCGTATCTGGCCTCCTCACAGCTCCGCAGCAGTGCT
GTGGACACCACGGAGTTGTCGTCGATATCTCAAAATCACGAGAAAATCAA
CGTGTCTGCGGCTCCGAACTCTGTACTTTCCGCGGCGCCCCCAGCGATTT
GAGCCTTTGAGCTGACAGCATGCACACACAGCTTCGCCTTAACTCTCGAG
AACCACCGCATGCTGAGCCTAGAGCGGGTTGGTTTGCTCGCCACGCTGCA
TTATGCGTCGTGAGGGCTCCTGCCACAGCCCCAGGGTTCATCTCATGTCT
TTGAGACAAAGAACTCTGTATTGTCTGGTCCGCCAAAAAAGCTCGACTTG
GATTGATGAAGTACTGAAAGTGTCGCCAAACGTTTCACAGAGTTTGACTG
CTATTTAGTATAGAAAACGTCGCCAAATTGGTGTGGGGCCCTGCGGATGG
TCTCTGCAGGTGTCTGGCGCAGGGACTGTCCTTCTCGACCAATCAGCGGG
CATCTAAAACAGTTCGATAATTTTGGTCCGATAACTTTGGTTCTCAGGGA
CCTCCTGTACTAAAAGGGTTAAATAAAACATCTCGATTTTGATTTCAATT
TTCTATTCGCGGTTGTGTCTAAGCAACCGCAGCATGCAAATCGAAATCGA
AATCGAAACGCGGGGGGGGAAGGCCCGAAATGGCCACATTGCAATGCTTC
AAACGATGACCGTGAGAGCTAAGGGGCATCTGAGCCATCAAAATACAGCT
CCGGACAACCGCCCAGTTGAGGCCTACACGTAGATGCCAGCCTCTTTGCG
AGGCGCGACGTATTCAGCAAGGAGTGCGTGTCGGAGTGCTGCGGTGTGGC
AACTCAGCGATAAAAAATAGATGTCGTTGAACACGCAATTTTTCACGCCG
ATGGCTGTAGCTCGTTCAATTCGCAGCGATTGCTGCTGTTTCAAAGGATT
CTGGGCTGTACAGGATATCAGCTTCATCCGAAAGTATCGCATGTGTCATG
AAGCCGCCAATAGGTGGCAAGGTAAAGGTCGGAGTGAAGGCATGTCAATA
TTTCAGGAGCGTTTGGGATCGCCCGCGGACCACACCTCAAGTTACCCCTC
GCCCTTTTCACGCCGCATTTAGAGGCTATTCGTCTGTTCTTTTGATTTTG
GGTAATCGACAGAGAATGCGGCGTAAAAGGCCAAAATCGAAACCTCGATG
GCCGCAGGTGCCACGTTGACAAATCACGTAATTTCGCCGCTTCGATTTCG
ATTTCGATTTCGATTTTTTTTTCGTGATGTTAAGGGTGGACCACGCAGCA
CAGCTTTGAAATCCCGGTCAGAGATTCCAGGAGAGAGCCCGAAGCGACAC
TTGCTTTTTTTATAGCGGTTATTTTTTGCCATCTCCCACAGAAAGTGCCG
TGGATCTCTCTCCAGCTGCTCTATCTCGCCGCAAAATTGATTTTTGCGCT
TTGACATGAGAACTGATACCAAATTTCCTCAGTGAGTCCTTGGGGTTGAC
TACCGTGAGATAGCTCTCACTGGTGATAGCAGAGCAGAGAGCAATATGCA
CCACGATCGACCGTTTGAATCCTAGTCTGCACCGAGCTAACTACATTTTT
GTGTGTCCGCAAAAGTGAGCGCATGCACACTGGGGTAGACAGCAGCGAGG
GTCGGCCATGGGGCGCTGGAGGTCTTTGGAGACATGGTCTTCGGCTGAGC
ATCATTTATAAGAACCTTGGAGGAACATAGTCGGAGCACAGCAGGAGCGG
TGCACAATAGCTTTCGATCTGGAGATTTTTGTGTTTTCAAACCGTCTCAA
AACGTCCAATTTTCTGTCAATCTGGTCGGGTTTTGCTGAACGAATAAAGG
CACACACGCTTTGCGAACCAGCTCAAACAGCAGACACGCGAAGATAGCCA
GGATGTTTCCCTTCAAGTTAATGGAGTCAAGACAGTCAAACGGATTCCAA
CACCCATAGAAATTGCGGCGCCAAACAGTTTTTCTTATTGTACTGATTTC
AAAGAGGAAGGCATTAGAACCAGCAGTCTATTCCCCCCAACCTTAACTAC
GTGGTCCACCCTTAAGGGGGTGATGACAACCGATCTCGGGGTTGGCTGGG
TTTGAAAAAGACCGAACAAGCACCCAACAATCACAGAGCAGATACACCAG
GCCAGTAGGGAAGGGTTGCGCAAGAAGAGAAGTGCTGGTTCGCTCACCCA
GCGGCGAGCGGGGCTGCTCTTTCCATATGTATCACGTAGTTTACCACCCC
CCACACAGTCTGAAATCAAGATAAATATTACAGCACTCTGCAATCAAGTC
AAAAGGGCCAAAATGGCGGGCGCTCAAATAAGGTCTGCCTTGGTAAGTTA
AGCAGTTCCGGGCATGGAATCACTAGAGCTAACCATGGAGAGGTGACGTG
TGTATTGGCGCGCTCAGATCTGCTGCTGGAGCGGAGAGATCGAGAGTCGT
AGCAGCGACCGAGAATCTCCGCGAATTGACCGACGCACCTTGTCTCCCAT
TACTGTGCTCGCCGCCACGGATCCCAATCTCCTGAACTGCGGGTCTACAG
CAGTAGTTAATACCACCAGCTACTGCTGAGGACCCGCAGTTCAGGCGGTT
ACGGCCCGTGGCGGCAAGCACAGCCGTGACAAACGTTTGTTGTCGGTCGA
ATATGCGGACAGTCCAGCGACTGCTGCGACCTTCAATATCTCCGCTCCAG
CAGCAGATCTGATCGCGCCAACACACACGTGACTTCTCCATGGTTAGCTC
TTGTGATTCCATGCCCGAAACTGCTTAGCTTTCGACGGGAAGTTGGTTTT
CGTTATATTCGGCCTTATTATCTTGATTTTAGTGTGAAACTGCTTAACCA
CCGTTGTCAGCACCCCCTTAAGACCCACCCTCAGCTGTTTGAGAGCATAA
TATCTACTAAGTACAAATTAGATTGGACTGGTATGTATGTAGGCTGCACA
TGAAGTTGCGGGGAGTTTTTAGGAAACATGTATCGTGGGGGCAGACACGC
GAATCAATACAGGACCCGCAACCCGTTTGCACAGCATAAATGGCCCCAGG
GAGTTGCTGTTGGGTACACGGGTGTTGGCACAAAAGCTTGGGATAGAAGG
TTTTAATGGTGCAAGTGTACTCATAACTCAACACTACCCCCCGGCTGCTC
CCCGGCCGGGGTCGAACTCGACCTAGTGAGTCCCTCGCGGGCAAGCCAGG
CCTCGCCATGGGAAGAGGGTGGGGTGTACACGTGCAGCCTCGCCAGCGTG
CTGATGCGCGTTGGCGAGGCTGTGCATTCGGTGGCAGAGACGAGAGGTGC
GGCTGGACCACGTCCCCGCGGCAATTTCTGCCGGAGGCAAGCTGCACCTG
AGAAAAGCCACCGTCGCCGAAAGCGCGGAGCCCGTAGTTTGAGGAGTAGA
GAGACTCACAAGCACCACGTCAGTAAGCAAAAACGCCCGCGGGGAGAGGG
AGAGAGCCGCAGACGCGGGTGGGGATTGGGGGAGTGAGAACTCACGTATG
ACTGGTATTAGCTACTGCCTCTAACCCCCAGCATCAGAAGAGCTGAAAAA
AGCGCTTGCTCGTTGCATTTGTTTCTGCGCAATCCTGTTCATGGATAAGA
CGCGGCGAAGGGCATGACGGAAGTCGAGCTTAACTCGGCGCTGGCCAAGA
TGATGTTGGCCCTGAGCGACCGGTACACGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6827:1173..6304+

>mRNA_L-elsbetiae_contig6827.15586.1 ID=mRNA_L-elsbetiae_contig6827.15586.1|Name=mRNA_L-elsbetiae_contig6827.15586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig6827:1173..6304+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGCACCAGCATCAGCACCAGCACCAGCACCAGCACGTCCGCTGCC
AACGCCACAGCCGTTATGGACACGCAAGTCGGCAGCAAGAACCGTTCTGT
CATCCCTACTGGCGGCCATCGTTTTAAGCAGCGCAAAATGGCGCCCCCGG
CGGCTTCAACACGAACAAGACAGCAGCAATATTGGATGAGAGCACCAGCA
TCAGCACCAGCACCAGCACCAGCACGTCCGCTGCCAACGCCACAGCCGTT
ATGGACACGCAAGTCGGCAGCAAGAACCGTTCTGTCATCCCTACTGGCGG
CCATCGTTTTAAGCAGCGCAAAATGGCGCCCCCGGCGGCTTCAACACGAA
CAAGACAGCAGCAATATTGGACGCGGCGAAGGGCATGACGGAAGTCGAGC
TTAAACGCGGCGAAGGGCATGACGGAAGTCGAGCTTAA
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