mRNA_L-elsbetiae_contig6826.15585.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6826.15585.1
Unique NamemRNA_L-elsbetiae_contig6826.15585.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6826.15585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6826contigL-elsbetiae_contig6826:4446..5061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size616
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.1908321-UTR-L-elsbetiae_contig6826:4445..47461622816756.1908321-UTR-L-elsbetiae_contig6826:4445..4746Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6826 4446..4746 +
1691683789.683638-UTR-L-elsbetiae_contig6826:4445..47461691683789.683638-UTR-L-elsbetiae_contig6826:4445..4746Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6826 4446..4746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.2009044-CDS-L-elsbetiae_contig6826:4746..50611622816756.2009044-CDS-L-elsbetiae_contig6826:4746..5061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6826 4747..5061 +
1691683789.696973-CDS-L-elsbetiae_contig6826:4746..50611691683789.696973-CDS-L-elsbetiae_contig6826:4746..5061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6826 4747..5061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6826.15585.1prot_L-elsbetiae_contig6826.15585.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6826 4747..5061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6826.15585.1

>prot_L-elsbetiae_contig6826.15585.1 ID=prot_L-elsbetiae_contig6826.15585.1|Name=mRNA_L-elsbetiae_contig6826.15585.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MSKLFTKHDIPLSSRPVYMCTWMDPTDFPRYHLTEHAKLQNISSVSFCCP
TYIQQTAALGWPNENPSGLHSGQQATTFFSLFSFPPAIYCASLGWVGLSR
VGWRN
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mRNA from alignment at L-elsbetiae_contig6826:4446..5061+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6826.15585.1 ID=mRNA_L-elsbetiae_contig6826.15585.1|Name=mRNA_L-elsbetiae_contig6826.15585.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=616bp|location=Sequence derived from alignment at L-elsbetiae_contig6826:4446..5061+ (Laminarionema elsbetiae ELsaHSoW15)
ATTTGTGTGTGAGAGCACCAAAAATAACATTGGAAAGCTCCGGTATCATG
GCGTCAGGCATTGGCTTCACTTGATAAATGAATGGGTGACGTCTCCGGAG
ATGGGAAAAAACGACTTTGCACAGCCGTAGCTCAGCCCAAACATCGAGCC
AGAAGATGGGAGTTGCAGCGTTGGGATGGATAAATTCTGGAGAGCAGGAT
GCAGCTTTAAAAAAAACAAAAGTATTTGTGTGCGAGAACACGGTTAACGA
TGGCAGGAATTTCCGCGTAGTAAGGAAGAATCAAAATACATTATTGTAGT
TATGTCTAAGTTGTTCACGAAGCACGACATACCTCTATCAAGTAGACCAG
TGTACATGTGTACCTGGATGGATCCCACGGACTTCCCGCGGTATCACCTC
ACCGAACATGCGAAACTGCAAAATATCTCGAGTGTAAGTTTCTGTTGTCC
TACATATATACAACAGACAGCAGCATTAGGCTGGCCCAATGAAAATCCGT
CAGGCTTACATAGCGGGCAACAAGCAACCACTTTTTTTTCTCTTTTTTCT
TTCCCTCCTGCGATCTATTGCGCTTCTTTGGGTTGGGTAGGCTTGTCCCG
AGTGGGCTGGCGAAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6826:4446..5061+

>mRNA_L-elsbetiae_contig6826.15585.1 ID=mRNA_L-elsbetiae_contig6826.15585.1|Name=mRNA_L-elsbetiae_contig6826.15585.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig6826:4446..5061+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTAAGTTGTTCACGAAGCACGACATACCTCTATCAAGTAGACCAGT
GTACATGTGTACCTGGATGGATCCCACGGACTTCCCGCGGTATCACCTCA
CCGAACATGCGAAACTGCAAAATATCTCGAGTGTAAGTTTCTGTTGTCCT
ACATATATACAACAGACAGCAGCATTAGGCTGGCCCAATGAAAATCCGTC
AGGCTTACATAGCGGGCAACAAGCAACCACTTTTTTTTCTCTTTTTTCTT
TCCCTCCTGCGATCTATTGCGCTTCTTTGGGTTGGGTAGGCTTGTCCCGA
GTGGGCTGGCGAAATATGTCTAAGTTGTTCACGAAGCACGACATACCTCT
ATCAAGTAGACCAGTGTACATGTGTACCTGGATGGATCCCACGGACTTCC
CGCGGTATCACCTCACCGAACATGCGAAACTGCAAAATATCTCGAGTGTA
AGTTTCTGTTGTCCTACATATATACAACAGACAGCAGCATTAGGCTGGCC
CAATGAAAATCCGTCAGGCTTACATAGCGGGCAACAAGCAACCACTTTTT
TTTCTCTTTTTTCTTTCCCTCCTGCGATCTATTGCGCTTCTTTGGGTTGG
GTAGGCTTGTCCCGAGTGGGCTGGCGAAAT
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