mRNA_L-elsbetiae_contig6824.15584.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6824.15584.1
Unique NamemRNA_L-elsbetiae_contig6824.15584.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6824.15584.1 vs. uniprot
Match: D7G7K7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7K7_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 5.640e-20
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 3 
Query:    3 RMGRYEECRSMVEIVLRMDPDMPAAQTLHKAVQEATARRKSQEVLTVVAGGVMMSGLGIVAALLLN 200
            RMGRYEECRSMVEIVLRMDPDMPAAQTLHKAVQEA ARR ++ V  V AGG  ++GLGI+   LL+
Sbjct:   92 RMGRYEECRSMVEIVLRMDPDMPAAQTLHKAVQEAVARR-NETVRNVAAGGAAVAGLGILVGALLS 156
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6824.15584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7K7_ECTSI5.640e-2074.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6824contigL-elsbetiae_contig6824:7180..8962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.5e-16
Seed eggNOG ortholog2880.D7G7K7
Preferred nameFIS1
KEGG koko:K11982,ko:K17969
KEGG Pathwayko04137,ko04139,map04137,map04139
Hectar predicted targeting categorysignal anchor
GOsGO:0000266,GO:0000422,GO:0001101,GO:0001300,GO:0001666,GO:0001678,GO:0001836,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005777,GO:0005778,GO:0005779,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006873,GO:0006874,GO:0006875,GO:0006886,GO:0006914,GO:0006915,GO:0006950,GO:0006996,GO:0007005,GO:0007031,GO:0007154,GO:0007165,GO:0007204,GO:0007568,GO:0007569,GO:0008053,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009056,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009743,GO:0009746,GO:0009749,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010604,GO:0010638,GO:0010646,GO:0010647,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0014070,GO:0014823,GO:0014850,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016559,GO:0019222,GO:0019722,GO:0019725,GO:0019867,GO:0019932,GO:0022411,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030003,GO:0030162,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031323,GO:0031325,GO:0031667,GO:0031903,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032469,GO:0032471,GO:0032502,GO:0032592,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0033500,GO:0033993,GO:0034284,GO:0034613,GO:0035556,GO:0035584,GO:0036293,GO:0042221,GO:0042579,GO:0042592,GO:0042593,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043280,GO:0043281,GO:0043523,GO:0043525,GO:0043653,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0045184,GO:0045862,GO:0046907,GO:0048284,GO:0048285,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051480,GO:0051560,GO:0051561,GO:0051641,GO:0051649,GO:0051716,GO:0052547,GO:0052548,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060255,GO:0060341,GO:0061024,GO:0061025,GO:0061726,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070482,GO:0070584,GO:0070585,GO:0070727,GO:0070887,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071396,GO:0071407,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072503,GO:0072507,GO:0072594,GO:0072655,GO:0080090,GO:0090087,GO:0090140,GO:0090141,GO:0090313,GO:0090314,GO:0090316,GO:0097190,GO:0097237,GO:0098573,GO:0098588,GO:0098771,GO:0098805,GO:1901214,GO:1901216,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902533,GO:1902617,GO:1903008,GO:1903533,GO:1903827,GO:1903829,GO:1904578,GO:1904579,GO:1904951,GO:1905395,GO:1905475,GO:1905477,GO:1990910,GO:2000116,GO:2001056,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.mitochondrial fission
EggNOG OGsKOG3364@1,KOG3364@2759
EC2.3.2.27
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04121,ko04131
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-22_002050.1
Exons2
Model size983
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6824.15584.1prot_L-elsbetiae_contig6824.15584.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6824 7942..8957 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.116652-UTR-L-elsbetiae_contig6824:7179..79411622816756.116652-UTR-L-elsbetiae_contig6824:7179..7941Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6824 7180..7941 -
1691683789.6366444-UTR-L-elsbetiae_contig6824:7179..79411691683789.6366444-UTR-L-elsbetiae_contig6824:7179..7941Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6824 7180..7941 -
1622816756.152302-UTR-L-elsbetiae_contig6824:8957..89621622816756.152302-UTR-L-elsbetiae_contig6824:8957..8962Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6824 8958..8962 -
1691683789.6723158-UTR-L-elsbetiae_contig6824:8957..89621691683789.6723158-UTR-L-elsbetiae_contig6824:8957..8962Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6824 8958..8962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.1304343-CDS-L-elsbetiae_contig6824:7941..80421622816756.1304343-CDS-L-elsbetiae_contig6824:7941..8042Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6824 7942..8042 -
1691683789.6516848-CDS-L-elsbetiae_contig6824:7941..80421691683789.6516848-CDS-L-elsbetiae_contig6824:7941..8042Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6824 7942..8042 -
1622816756.1419094-CDS-L-elsbetiae_contig6824:8842..89571622816756.1419094-CDS-L-elsbetiae_contig6824:8842..8957Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6824 8843..8957 -
1691683789.6619952-CDS-L-elsbetiae_contig6824:8842..89571691683789.6619952-CDS-L-elsbetiae_contig6824:8842..8957Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6824 8843..8957 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6824.15584.1

>prot_L-elsbetiae_contig6824.15584.1 ID=prot_L-elsbetiae_contig6824.15584.1|Name=mRNA_L-elsbetiae_contig6824.15584.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
MGRYEECRSMVEIVLRMDPDMPAAQTLHKAVQEATARRKSQEVLTVVAGG
VMMSGLGIVAALLLNSHRRRN*
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mRNA from alignment at L-elsbetiae_contig6824:7180..8962-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6824.15584.1 ID=mRNA_L-elsbetiae_contig6824.15584.1|Name=mRNA_L-elsbetiae_contig6824.15584.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1783bp|location=Sequence derived from alignment at L-elsbetiae_contig6824:7180..8962- (Laminarionema elsbetiae ELsaHSoW15)
CCAGGATGGGGCGCTACGAGGAGTGCAGGAGCATGGTGGAGATCGTGTTG
CGGATGGACCCCGACATGCCCGCGGCGCAGACCTTGCACAAGGCCGTCCA
GGAGGCCACCGCGCGTAGAAGTGAGCCTTTTTGCGACTGAACTACCGCAT
ACGACACAAGATTCACACACACCCTGGACCGATTTCCAAAGCTCAAGTAT
GTACATACAAGTCCGCAGCTAGAGAATAGAGTCGATCCCGAAAAAGGCGA
ACCTGGAAAGATCCAATCAAGAGCTGTCCGAAAACGTGTCGTTTGGTATT
ATATATATATATATATGTGAATCATACTCGTTGCGGAGTAGGCGAGCTTT
GAAAATTGGTCCAGGGGGTGTGTTGTCTTGTGTCGAAATACGGTACTGCT
GTGTTCATCCTTCTACGGCTTTTTTGCTTTGAGCTTGCCTGCTCAATACC
CGCTTTTGCTTGTTTCCAGGAAGACGTGGCGCTCGTAAATGACCCCCCCC
CCCCCCCCCCCCCCCCCCCCGACCCCCACAACGGCGCGGCGCCCCCCGCC
ACACACCCACCCCACCCNNNNNNNNNNCTCCATCCCCCCTTTTTTTTTTT
TTCGCGGGAAGGGGGGGGCCCGATACGTCCCCCCCCCCCCCCCCCCCCAG
TGGTCGAACGACTATATGCGGAGAGGTCAGCAACAGACACGTAGCCCCCC
ACTCCCAAATGATACTTTCCACCGTGCCGAAAGGCGGATTGACGGATCTC
ACGGTGCTGGAGTTTTCGGGTGTCGAACTTTAACTGTCACGATAGACTTT
GTCTGTGGAGGGTCGAATGAATGCAAGCGTGAGGTGTATTTTTGTATTTC
GAAGTATTTATTTTATGTTGTGCTTGCCTGTCTTTGCTTCTGTTGTTTTT
CGACCCCCTCCTCCGACCAGAATCCCAGGAGGTGTTGACGGTGGTTGCTG
GAGGCGTTATGATGAGCGGGCTCGGAATCGTTGCCGCCTTGCTGCTGAAT
AGTCACAGGAGGCGAAACTAATAAGCCGGGGGCGGAAACATGACTTTCGC
GACACAGCAGGTCCTTACATACAAACTAGACTCGAGTATTTGGAATTCTG
TCCAGGGGGTGTGGTATCTTTGTGTCACCTACGGTATGTGCATCTTCGTG
GTGCCCGGATGATAGCGCAGTCAAGTCTTGACTCTTGACACACCGCGCCG
ATGGATGCATCTGCTTCTCCCCCGGGGGATGCCCCGCTCACCTCGATTCT
ATACGAGCGACTCAAGAATATTGCGTCGCTGTCCGTATGTGCCTCTTGTG
CGCTGGAGATCCCTTTGCACTACCACTACTGCTGTCGTTGCACACAAGAA
GGATACCGTAGGTGACACCAGATAACACACCCCCTGGACACACTTCCAAA
GCTCGATTCCTCCCCAGCAAGAAGAGTCCCAGTGCCGAAAGGGGTGGCGT
TGGAAAGATCTAATCGAGGGCTGTCCGAAAACGTGTCGTACGGTGCTGGC
ACTCTTTTCGTTACGGAGTAATGGAGCTCTGAAATTTGGCCCAGGGGGTG
TGGTATCTTGTGTCACCTACGGTAGCTTCAAGCCGCCCGCCACCGTAACC
GCCACCATTTTCCAACCCATTTTCTCCTTCCGTCGCGTGTCGCATGTGCC
TTACATTACATGTGTCTTCTCACGTTTTCGTACCTGATTTTTTTCCCCCC
ACCCCCCCTATTTATAGATGAAACCGTCAGAAACGTTGCTGCGGGAGGCG
CTGCGGTCGCGGGTCTCGGCATCTTGCTCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6824:7180..8962-

>mRNA_L-elsbetiae_contig6824.15584.1 ID=mRNA_L-elsbetiae_contig6824.15584.1|Name=mRNA_L-elsbetiae_contig6824.15584.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig6824:7180..8962- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCGCTACGAGGAGTGCAGGAGCATGGTGGAGATCGTGTTGCGGAT
GGACCCCGACATGCCCGCGGCGCAGACCTTGCACAAGGCCGTCCAGGAGG
CCACCGCGCGTAGAAATGGGGCGCTACGAGGAGTGCAGGAGCATGGTGGA
GATCGTGTTGCGGATGGACCCCGACATGCCCGCGGCGCAGACCTTGCACA
AGGCCGTCCAGGAGGCCACCGCGCGTAGAAAATCCCAGGAGGTGTTGACG
GTGGTTGCTGGAGGCGTTATGATGAGCGGGCTCGGAATCGTTGCCGCCTT
GCTGCTGAATAGTCACAGGAGGCGAAACTAAAATCCCAGGAGGTGTTGAC
GGTGGTTGCTGGAGGCGTTATGATGAGCGGGCTCGGAATCGTTGCCGCCT
TGCTGCTGAATAGTCACAGGAGGCGAAACTAA
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