mRNA_L-elsbetiae_contig6817.15577.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6817.15577.1
Unique NamemRNA_L-elsbetiae_contig6817.15577.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6817.15577.1 vs. uniprot
Match: A0A6H5JBU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU0_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 2.530e-66
Identity = 203/483 (42.03%), Postives = 255/483 (52.80%), Query Frame = 2 
Query:   71 MVRTTLSTRPWVILIAQVLAQPYYCVLGVLETNQDGPGALDTNNKAAATAGKRVLPGKPPEPRAVEEDVIVAARHCVALDGSGYFPADHSLGLFEMDGARA--SRPRITTASVEF-VQQRHQEMGGAGVDHTVAAGTVGVRLLLDVDITDERKEKEGGEGSPLELHAAYNAGESIPTREEVEAAAAEAAAVT-NNAAEAQLAISALAAWNLISTNNSSIAQEGNAAGIEMRIEVAAAFGYGGDRYTFSESLALAQDDAYIGSNDAPLS-ASFDWQPTGAIWASLDGPAVADVKVYGVPSAAMTESVPMKQGETLLLHATLCKRASPGVVASTAP--VQVTLKQPYIEHNEFATKVEEEGIAVVASADASNXXXXXXXXXXXXXXXXXXXXXXXXEYGRGMEAVNALPRMPGWKPGDWKKXXXXXXXXXXXXXSRRTENTAYRQAGRRGVGSNSGTDSRDGLKRREQTSKRRRRTPGWGVVKEA 1498
            M RTT++     IL  QVLA+ + CV  +LE  +D     D  +  AATAG     G+  + RA E DV  AARHCVA+D  G FPA+H+LGLFE +  R     PR+T ASVEF    + Q  GG+  D T A GT+  +++L+VD T   +E  GG  S          GE +PT E +E  AA A A T  N AEAQ+AISALAAWNL++T      +E  A    +R+EV AAFGY GD YT S+++ L  D    G + A LS A+FDWQP   +W+ LD P  ADV+VYG  S    E    ++   LLL  TLCKRAS     ST     Q T+K     + E    V  E +A+  S  +                          E GRGM+AV+ALPR+P WKPGDWKKXXXXXXXXXXXXX          +A + G      T SRDG  RR    + +     WG VK A
Sbjct:    1 MRRTTIA-----ILFVQVLAR-FSCVATILEARRDALSPDDATSTVAATAGGT---GRVIQLRATESDVKAAARHCVAVDEVGRFPANHALGLFETEPGRLVLGTPRVTDASVEFSALPQRQNAGGSNSDETPATGTIVFKVVLEVDNTGRWREGGGGTTS------GRRTGEPVPTGEGMEMTAAAATAATAENPAEAQMAISALAAWNLMTT------RETPAMLPMIRVEVGAAFGYHGDWYTASKTIPLTSDGT--GHSSALLSSATFDWQPAPDVWSKLDEPMAADVRVYGTASTPTEE----QEAGLLLLRGTLCKRASGFGGRSTRDETTQGTMKAALTPYAERLPAVAAEAVAISPSRPS--------VVVSEIRDEEWWRAREEEESGRGMDAVDALPRLPRWKPGDWKKXXXXXXXXXXXXXXXXXXXXXXXRADKWGGDRGRDTASRDGRNRRGGGREAKVGRSPWGAVKGA 448
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BLAST of mRNA_L-elsbetiae_contig6817.15577.1 vs. uniprot
Match: D8LGJ6_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ6_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.750e-8
Identity = 39/88 (44.32%), Postives = 51/88 (57.95%), Query Frame = 2 
Query:  107 ILIAQVLAQPYYCVLGVLETNQDGPGALDTNNKAAATAGKRVLPGKPPEPRAVEEDVIVAARHCVALDGSGYFPADHSLGLFEMDGAR 370
            ++  QVLA+ + CV  V E  +D     D  +  AATAG     G+  + RA E DV   ARHCVA+D  G FPA+H+LGLFE +  R
Sbjct:    8 VVFVQVLAR-FSCVATV-EARRDALSPDDATSTTAATAGGT---GRVIQLRATESDVKAVARHCVAVDEDGRFPANHALGLFETEPGR 90
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6817.15577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBU0_9PHAE2.530e-6642.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGJ6_ECTSI1.750e-844.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6817contigL-elsbetiae_contig6817:6654..9228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size2010
Cds size1488
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6817.15577.1prot_L-elsbetiae_contig6817.15577.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6817 6724..8776 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816755.0603664-UTR-L-elsbetiae_contig6817:6653..67231622816755.0603664-UTR-L-elsbetiae_contig6817:6653..6723Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6817 6654..6723 +
1691683788.899127-UTR-L-elsbetiae_contig6817:6653..67231691683788.899127-UTR-L-elsbetiae_contig6817:6653..6723Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6817 6654..6723 +
1622816755.0944092-UTR-L-elsbetiae_contig6817:8776..92281622816755.0944092-UTR-L-elsbetiae_contig6817:8776..9228Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6817 8777..9228 +
1691683788.9311786-UTR-L-elsbetiae_contig6817:8776..92281691683788.9311786-UTR-L-elsbetiae_contig6817:8776..9228Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6817 8777..9228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816755.0728426-CDS-L-elsbetiae_contig6817:6723..68161622816755.0728426-CDS-L-elsbetiae_contig6817:6723..6816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6817 6724..6816 +
1691683788.9096143-CDS-L-elsbetiae_contig6817:6723..68161691683788.9096143-CDS-L-elsbetiae_contig6817:6723..6816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6817 6724..6816 +
1622816755.0837486-CDS-L-elsbetiae_contig6817:7381..87761622816755.0837486-CDS-L-elsbetiae_contig6817:7381..8776Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6817 7382..8776 +
1691683788.9219737-CDS-L-elsbetiae_contig6817:7381..87761691683788.9219737-CDS-L-elsbetiae_contig6817:7381..8776Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6817 7382..8776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6817.15577.1

>prot_L-elsbetiae_contig6817.15577.1 ID=prot_L-elsbetiae_contig6817.15577.1|Name=mRNA_L-elsbetiae_contig6817.15577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=496bp
MVRTTLSTRPWVILIAQVLAQPYYCVLGVLETNQDGPGALDTNNKAAATA
GKRVLPGKPPEPRAVEEDVIVAARHCVALDGSGYFPADHSLGLFEMDGAR
ASRPRITTASVEFVQQRHQEMGGAGVDHTVAAGTVGVRLLLDVDITDERK
EKEGGEGSPLELHAAYNAGESIPTREEVEAAAAEAAAVTNNAAEAQLAIS
ALAAWNLISTNNSSIAQEGNAAGIEMRIEVAAAFGYGGDRYTFSESLALA
QDDAYIGSNDAPLSASFDWQPTGAIWASLDGPAVADVKVYGVPSAAMTES
VPMKQGETLLLHATLCKRASPGVVASTAPVQVTLKQPYIEHNEFATKVEE
EGIAVVASADASNSSSRPPIVVSEIEDEEWWKSREEEEYGRGMEAVNALP
RMPGWKPGDWKKRRRRRRRQQEEKESRRTENTAYRQAGRRGVGSNSGTDS
RDGLKRREQTSKRRRRTPGWGVVKEAWKAFGRMIRGAKGKLRRKK*
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mRNA from alignment at L-elsbetiae_contig6817:6654..9228+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6817.15577.1 ID=mRNA_L-elsbetiae_contig6817.15577.1|Name=mRNA_L-elsbetiae_contig6817.15577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2575bp|location=Sequence derived from alignment at L-elsbetiae_contig6817:6654..9228+ (Laminarionema elsbetiae ELsaHSoW15)
TCACGCCCAGCGACGACCAGAGCCGGCCAAACCGCACAGCGCGACGGCTG
GGCGGGATCTACGTGCACCCATGGTGCGCACGACGTTGTCGACAAGGCCA
TGGGTGATACTGATTGCTCAAGTTTTGGCACAGCCCTACTACTGCGTGCT
GGGTGTTCTCGAGGTGAGAGCTGAAACACATCAATTGTGGATTGGCAGAG
ACGCACCTCCCGGCGGTAGCCCGACGACCTGGTGCTTTGATACCCAGCCT
TTAGAGAGCATTGTCTCTGTGCTCCTTGTTGACGGGTGAACACCGGTATC
ACGACTTTTGTCCGAAACGTGTCGATTGTGCATGGTCGCTGCTGGGGAGC
AACACAACTAAGCTGTAAAGGCGGTGTTCGGCTCTTTCAAACTCGGGCGG
GGAAGTAAGTCACTTACGTAGGGATAGACTACAGCAAAAGTAGATGGTAA
ATTACCGCATCGCCTCAAGTAAAACCAGCGGAAAGTATGACAGTTTTCGA
GGCCTGTCGAAGCAATCGGCAATAACCGCAATCCGATACCAGCCAAACCT
GACTCGCATGTCTCTCATGCCTGTACGGATTTTCGACGCATGTGTGGGTA
CCACCCTCATAAAGGTACCACATGTACCACCCTCATAAAGGGTTGGATCA
CACTAACGTCTGTCGAGGACGATAACCTCTTTTCCACACATGTGTGTTTT
TAAATCCTGCCCTCCCCGCCTCCCGCAGACGAACCAAGATGGCCCTGGGG
CCCTTGATACCAACAACAAAGCTGCCGCTACCGCCGGGAAAAGGGTTCTA
CCGGGGAAACCACCCGAACCAAGAGCAGTGGAAGAAGACGTCATTGTGGC
CGCGCGCCACTGCGTTGCTCTCGACGGGTCGGGATACTTTCCAGCAGACC
ACAGCCTTGGCCTATTTGAGATGGATGGTGCCCGAGCCAGTAGGCCTCGA
ATTACAACGGCCTCGGTGGAGTTCGTACAGCAGCGGCACCAAGAAATGGG
TGGTGCTGGTGTTGATCATACGGTGGCCGCCGGGACGGTCGGGGTGAGAT
TGCTGTTGGATGTCGATATCACGGACGAACGGAAAGAAAAAGAAGGCGGT
GAAGGCTCGCCGCTGGAACTTCACGCTGCCTACAACGCCGGCGAGTCGAT
TCCGACTAGGGAGGAAGTGGAGGCTGCGGCGGCGGAGGCGGCAGCCGTGA
CAAACAACGCGGCGGAGGCACAGCTCGCGATATCAGCCTTGGCGGCATGG
AACTTGATATCGACCAACAACAGCAGTATCGCGCAAGAAGGCAACGCCGC
TGGCATAGAAATGCGCATCGAAGTCGCAGCCGCGTTCGGCTACGGCGGGG
ACCGGTACACGTTCAGCGAGAGCTTAGCCCTCGCTCAGGATGACGCCTAC
ATCGGCAGCAATGATGCACCTTTGAGCGCAAGTTTCGACTGGCAGCCGAC
GGGAGCTATCTGGGCGAGCCTCGACGGTCCAGCGGTAGCTGATGTTAAGG
TGTACGGTGTTCCTTCGGCGGCGATGACGGAGTCGGTACCCATGAAGCAG
GGAGAGACGTTGCTGCTGCACGCAACACTGTGCAAGCGCGCCTCGCCGGG
CGTGGTAGCAAGCACCGCCCCCGTGCAGGTGACCTTGAAGCAGCCTTACA
TCGAACATAACGAGTTCGCCACCAAGGTCGAAGAGGAGGGTATTGCAGTC
GTCGCCTCTGCGGACGCTTCCAATTCCTCTTCTAGGCCGCCTATCGTCGT
GTCCGAAATAGAAGACGAAGAGTGGTGGAAATCTCGCGAGGAAGAAGAAT
ACGGCAGGGGTATGGAAGCAGTGAATGCTCTACCGCGCATGCCCGGTTGG
AAGCCCGGGGACTGGAAGAAGCGTCGGAGAAGGAGAAGGAGGCAGCAGGA
GGAGAAGGAAAGCCGGCGAACTGAGAATACCGCCTATCGACAGGCTGGCA
GGAGGGGAGTTGGAAGCAATAGTGGTACGGATAGTCGCGATGGGTTGAAA
AGACGCGAACAGACGTCGAAAAGACGCAGACGGACACCGGGGTGGGGTGT
TGTGAAGGAGGCATGGAAAGCTTTTGGTCGAATGATACGTGGAGCGAAGG
GGAAGCTCCGACGAAAGAAATGAATGACGTATGCAGATCAGTTGCCCATG
GGTGTTGAAGTTTTGCTATATGTGACACGGCGTCAGATTCATCCTCATTT
TTGTTTGCCTCATCGTGGTAAAAAATGCGCTCCTGTGTGGGTTCGCTGTG
TGTGTACGCTCGAGAGAAGGGTTACTGGTTCGGTGTCGCTCTCAACCTTT
TGTAAGACTTGCACTGCAAAAGGAAGGTTGTGTGCGGTAGAGGCGATACA
CGTCTTTGATCCAGAAATACGTGCAGCATAGCAACCATAAACGCTTCCGG
GAGCATGTGGGTGTTCCAATTTTCAATTTGTTGGTTCTTTCAGGCCTTTC
GTTTGAGCACTATATTTTCTTGTGATCACTTTTTAGCCAATTTTTTTTCC
AATTTTTTCCAATTTTTTCCAAAAAGTGACCCCTTTCCCACGTTATAAAA
TCTCTAGTGATTTCAGCTTTTTGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6817:6654..9228+

>mRNA_L-elsbetiae_contig6817.15577.1 ID=mRNA_L-elsbetiae_contig6817.15577.1|Name=mRNA_L-elsbetiae_contig6817.15577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2976bp|location=Sequence derived from alignment at L-elsbetiae_contig6817:6654..9228+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCGCACGACGTTGTCGACAAGGCCATGGGTGATACTGATTGCTCA
AGTTTTGGCACAGCCCTACTACTGCGTGCTGGGTGTTCTCGAGATGGTGC
GCACGACGTTGTCGACAAGGCCATGGGTGATACTGATTGCTCAAGTTTTG
GCACAGCCCTACTACTGCGTGCTGGGTGTTCTCGAGACGAACCAAGATGG
CCCTGGGGCCCTTGATACCAACAACAAAGCTGCCGCTACCGCCGGGAAAA
GGGTTCTACCGGGGAAACCACCCGAACCAAGAGCAGTGGAAGAAGACGTC
ATTGTGGCCGCGCGCCACTGCGTTGCTCTCGACGGGTCGGGATACTTTCC
AGCAGACCACAGCCTTGGCCTATTTGAGATGGATGGTGCCCGAGCCAGTA
GGCCTCGAATTACAACGGCCTCGGTGGAGTTCGTACAGCAGCGGCACCAA
GAAATGGGTGGTGCTGGTGTTGATCATACGGTGGCCGCCGGGACGGTCGG
GGTGAGATTGCTGTTGGATGTCGATATCACGGACGAACGGAAAGAAAAAG
AAGGCGGTGAAGGCTCGCCGCTGGAACTTCACGCTGCCTACAACGCCGGC
GAGTCGATTCCGACTAGGGAGGAAGTGGAGGCTGCGGCGGCGGAGGCGGC
AGCCGTGACAAACAACGCGGCGGAGGCACAGCTCGCGATATCAGCCTTGG
CGGCATGGAACTTGATATCGACCAACAACAGCAGTATCGCGCAAGAAGGC
AACGCCGCTGGCATAGAAATGCGCATCGAAGTCGCAGCCGCGTTCGGCTA
CGGCGGGGACCGGTACACGTTCAGCGAGAGCTTAGCCCTCGCTCAGGATG
ACGCCTACATCGGCAGCAATGATGCACCTTTGAGCGCAAGTTTCGACTGG
CAGCCGACGGGAGCTATCTGGGCGAGCCTCGACGGTCCAGCGGTAGCTGA
TGTTAAGGTGTACGGTGTTCCTTCGGCGGCGATGACGGAGTCGGTACCCA
TGAAGCAGGGAGAGACGTTGCTGCTGCACGCAACACTGTGCAAGCGCGCC
TCGCCGGGCGTGGTAGCAAGCACCGCCCCCGTGCAGGTGACCTTGAAGCA
GCCTTACATCGAACATAACGAGTTCGCCACCAAGGTCGAAGAGGAGGGTA
TTGCAGTCGTCGCCTCTGCGGACGCTTCCAATTCCTCTTCTAGGCCGCCT
ATCGTCGTGTCCGAAATAGAAGACGAAGAGTGGTGGAAATCTCGCGAGGA
AGAAGAATACGGCAGGGGTATGGAAGCAGTGAATGCTCTACCGCGCATGC
CCGGTTGGAAGCCCGGGGACTGGAAGAAGCGTCGGAGAAGGAGAAGGAGG
CAGCAGGAGGAGAAGGAAAGCCGGCGAACTGAGAATACCGCCTATCGACA
GGCTGGCAGGAGGGGAGTTGGAAGCAATAGTGGTACGGATAGTCGCGATG
GGTTGAAAAGACGCGAACAGACGTCGAAAAGACGCAGACGGACACCGGGG
TGGGGTGTTGTGAAGGAGGCATGGAAAGCTTTTGGTCGAATGATACGTGG
AGCGAAGGGGAAGCTCCGACGAAAGAAATGAACGAACCAAGATGGCCCTG
GGGCCCTTGATACCAACAACAAAGCTGCCGCTACCGCCGGGAAAAGGGTT
CTACCGGGGAAACCACCCGAACCAAGAGCAGTGGAAGAAGACGTCATTGT
GGCCGCGCGCCACTGCGTTGCTCTCGACGGGTCGGGATACTTTCCAGCAG
ACCACAGCCTTGGCCTATTTGAGATGGATGGTGCCCGAGCCAGTAGGCCT
CGAATTACAACGGCCTCGGTGGAGTTCGTACAGCAGCGGCACCAAGAAAT
GGGTGGTGCTGGTGTTGATCATACGGTGGCCGCCGGGACGGTCGGGGTGA
GATTGCTGTTGGATGTCGATATCACGGACGAACGGAAAGAAAAAGAAGGC
GGTGAAGGCTCGCCGCTGGAACTTCACGCTGCCTACAACGCCGGCGAGTC
GATTCCGACTAGGGAGGAAGTGGAGGCTGCGGCGGCGGAGGCGGCAGCCG
TGACAAACAACGCGGCGGAGGCACAGCTCGCGATATCAGCCTTGGCGGCA
TGGAACTTGATATCGACCAACAACAGCAGTATCGCGCAAGAAGGCAACGC
CGCTGGCATAGAAATGCGCATCGAAGTCGCAGCCGCGTTCGGCTACGGCG
GGGACCGGTACACGTTCAGCGAGAGCTTAGCCCTCGCTCAGGATGACGCC
TACATCGGCAGCAATGATGCACCTTTGAGCGCAAGTTTCGACTGGCAGCC
GACGGGAGCTATCTGGGCGAGCCTCGACGGTCCAGCGGTAGCTGATGTTA
AGGTGTACGGTGTTCCTTCGGCGGCGATGACGGAGTCGGTACCCATGAAG
CAGGGAGAGACGTTGCTGCTGCACGCAACACTGTGCAAGCGCGCCTCGCC
GGGCGTGGTAGCAAGCACCGCCCCCGTGCAGGTGACCTTGAAGCAGCCTT
ACATCGAACATAACGAGTTCGCCACCAAGGTCGAAGAGGAGGGTATTGCA
GTCGTCGCCTCTGCGGACGCTTCCAATTCCTCTTCTAGGCCGCCTATCGT
CGTGTCCGAAATAGAAGACGAAGAGTGGTGGAAATCTCGCGAGGAAGAAG
AATACGGCAGGGGTATGGAAGCAGTGAATGCTCTACCGCGCATGCCCGGT
TGGAAGCCCGGGGACTGGAAGAAGCGTCGGAGAAGGAGAAGGAGGCAGCA
GGAGGAGAAGGAAAGCCGGCGAACTGAGAATACCGCCTATCGACAGGCTG
GCAGGAGGGGAGTTGGAAGCAATAGTGGTACGGATAGTCGCGATGGGTTG
AAAAGACGCGAACAGACGTCGAAAAGACGCAGACGGACACCGGGGTGGGG
TGTTGTGAAGGAGGCATGGAAAGCTTTTGGTCGAATGATACGTGGAGCGA
AGGGGAAGCTCCGACGAAAGAAATGA
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