mRNA_L-elsbetiae_contig68.15558.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig68.15558.1
Unique NamemRNA_L-elsbetiae_contig68.15558.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig68.15558.1 vs. uniprot
Match: A0A6H5JKL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.190e-16
Identity = 59/121 (48.76%), Postives = 69/121 (57.02%), Query Frame = 1 
Query:   94 DAAGAGA-----AQSPAADLCDDELCVVSLGLHDLEVFVARPSAADFGAPSFESPQPAPLGAES-------------ETQPS-----PASENGCCLQAGLSNAEGLVLPFSVDFSHVLTAR 387
            DAAGA A     A + AA+    ELCV+SLGL  L+VFVARPS +DFG PS +   P+P   E              E QP+     PA   G CL+ GLSN EGLVLPF VDF HV+ AR
Sbjct: 2001 DAAGAAAGVXXAADTDAAETTAAELCVMSLGLEGLQVFVARPSMSDFG-PSQQESSPSPTQPEEAVPAGLRGADDGQERQPTAPAPAPAGTTGRCLRGGLSNGEGLVLPFRVDFKHVILAR 2120
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig68.15558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JKL9_9PHAE1.190e-1648.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig68contigL-elsbetiae_contig68:42446..42835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.8183362-CDS-L-elsbetiae_contig68:42445..428351622816752.8183362-CDS-L-elsbetiae_contig68:42445..42835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig68 42446..42835 +
1691683787.1492403-CDS-L-elsbetiae_contig68:42445..428351691683787.1492403-CDS-L-elsbetiae_contig68:42445..42835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig68 42446..42835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig68.15558.1prot_L-elsbetiae_contig68.15558.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig68 42446..42835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig68.15558.1

>prot_L-elsbetiae_contig68.15558.1 ID=prot_L-elsbetiae_contig68.15558.1|Name=mRNA_L-elsbetiae_contig68.15558.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
DPTAAPATAPGDPGWSDAQRAGAPGDGADVGDAAGAGAAQSPAADLCDDE
LCVVSLGLHDLEVFVARPSAADFGAPSFESPQPAPLGAESETQPSPASEN
GCCLQAGLSNAEGLVLPFSVDFSHVLTARP
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mRNA from alignment at L-elsbetiae_contig68:42446..42835+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig68.15558.1 ID=mRNA_L-elsbetiae_contig68.15558.1|Name=mRNA_L-elsbetiae_contig68.15558.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig68:42446..42835+ (Laminarionema elsbetiae ELsaHSoW15)
GACCCCACCGCTGCCCCTGCCACTGCGCCCGGTGACCCTGGATGGTCGGA
CGCACAGCGAGCGGGAGCGCCGGGGGATGGAGCAGACGTTGGCGACGCTG
CTGGCGCTGGTGCCGCGCAGTCGCCGGCTGCTGACTTGTGCGATGATGAG
CTGTGCGTTGTGAGCTTGGGCCTGCACGACCTCGAGGTCTTCGTCGCCCG
GCCGTCGGCGGCCGACTTTGGGGCACCGTCCTTTGAGTCGCCACAGCCGG
CTCCTCTCGGAGCGGAAAGTGAAACACAACCCTCGCCCGCCTCAGAAAAT
GGTTGTTGCCTGCAGGCTGGTTTGTCGAATGCCGAGGGGCTCGTCCTCCC
GTTCAGCGTGGACTTTAGTCATGTCTTGACGGCCCGCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig68:42446..42835+

>mRNA_L-elsbetiae_contig68.15558.1 ID=mRNA_L-elsbetiae_contig68.15558.1|Name=mRNA_L-elsbetiae_contig68.15558.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig68:42446..42835+ (Laminarionema elsbetiae ELsaHSoW15)
GACCCCACCGCTGCCCCTGCCACTGCGCCCGGTGACCCTGGATGGTCGGA
CGCACAGCGAGCGGGAGCGCCGGGGGATGGAGCAGACGTTGGCGACGCTG
CTGGCGCTGGTGCCGCGCAGTCGCCGGCTGCTGACTTGTGCGATGATGAG
CTGTGCGTTGTGAGCTTGGGCCTGCACGACCTCGAGGTCTTCGTCGCCCG
GCCGTCGGCGGCCGACTTTGGGGCACCGTCCTTTGAGTCGCCACAGCCGG
CTCCTCTCGGAGCGGAAAGTGAAACACAACCCTCGCCCGCCTCAGAAAAT
GGTTGTTGCCTGCAGGCTGGTTTGTCGAATGCCGAGGGGCTCGTCCTCCC
GTTCAGCGTGGACTTTAGTCATGTCTTGACGGCCCGCCCGGACCCCACCG
CTGCCCCTGCCACTGCGCCCGGTGACCCTGGATGGTCGGACGCACAGCGA
GCGGGAGCGCCGGGGGATGGAGCAGACGTTGGCGACGCTGCTGGCGCTGG
TGCCGCGCAGTCGCCGGCTGCTGACTTGTGCGATGATGAGCTGTGCGTTG
TGAGCTTGGGCCTGCACGACCTCGAGGTCTTCGTCGCCCGGCCGTCGGCG
GCCGACTTTGGGGCACCGTCCTTTGAGTCGCCACAGCCGGCTCCTCTCGG
AGCGGAAAGTGAAACACAACCCTCGCCCGCCTCAGAAAATGGTTGTTGCC
TGCAGGCTGGTTTGTCGAATGCCGAGGGGCTCGTCCTCCCGTTCAGCGTG
GACTTTAGTCATGTCTTGACGGCCCGCCCG
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