prot_L-elsbetiae_contig6723.15467.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6723.15467.1
Unique Nameprot_L-elsbetiae_contig6723.15467.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length627
Homology
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BLAST of mRNA_L-elsbetiae_contig6723.15467.1 vs. uniprot
Match: A0A6H5KA71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA71_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 3.420e-36
Identity = 86/194 (44.33%), Postives = 108/194 (55.67%), Query Frame = 0 
Query:  472 VQQPDPHVEAVLRAADCQRFLPLFAASQVDLQILSAMDDEDFKTLKDDKNPAATVPKGPQLKIKFHCKKKMKELGFDVGSKADDGVSDCGGGADGKSDGTGSEGKCHTCRTEEIK---------------------------------------IIFCPCGHKACCVTCGEALEGQPCPICRIPVELASRFFTG 626
            V +PDPHVEAVL+AA C+R LPL  A QVDL+ L+ M+ +DFK L+D+ +    V +GPQLKIK +CK+KMKELG ++    +  V D   G         SEG CH C  +EI+                                       IIFCPCGH+ACCV CG+ALEG PCPICR PV+ A+R F G
Sbjct:  776 VAEPDPHVEAVLKAAKCERILPLLVARQVDLRKLALMEYDDFKALEDENDARTRVARGPQLKIKHYCKRKMKELGVEIELGKEGAVGDKNRGKKRAGHEGDSEGNCHVCWEKEIQSSDFLAIVFAVPRTSFPSICSTEMHRPLLCRVISYAQTQIIFCPCGHEACCVDCGKALEGGPCPICRAPVKEAARAFKG 969
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BLAST of mRNA_L-elsbetiae_contig6723.15467.1 vs. uniprot
Match: D8LT24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT24_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 6.370e-35
Identity = 85/205 (41.46%), Postives = 111/205 (54.15%), Query Frame = 0 
Query:  472 VQQPDPHVEAVLRAADCQRFLPLFAASQVDLQILSAMDDEDFKTLKDDKNPAATVPKGPQLKIKFHCKKKMKELGFDVGSKADDGVSDCGGGADGKSDGTGSEGKCHTCRTEEIK--------------------------------------------------IIFCPCGHKACCVTCGEALEGQPCPICRIPVELASRFFTG 626
            V +PDPHVEAVL+AA C+R LPL  A Q+DL+ L+ M+ +DFK L+D+ + +  V +GPQLKIK + K+KMKELG ++  + ++ V    GG         SEGKCH C  +EI+                                                  IIFCPCGH+ACCV CG+ALEG PCPICR PV+ A+R F G
Sbjct: 1258 VAEPDPHVEAVLKAAKCERILPLLVARQIDLRKLALMEYDDFKALEDENDASTRVARGPQLKIKHYSKRKMKELGVEIEPEKEEAVGYKNGGKKHAGHEGDSEGKCHVCWEKEIQVRTSSWLGGRSCAGLFFCFVLDVAAELAPFLSVLELLRRCSCAAPPAAALIIFCPCGHEACCVDCGKALEGGPCPICRAPVKEAARAFKG 1462
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6723.15467.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KA71_9PHAE3.420e-3644.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT24_ECTSI6.370e-3541.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 574..618
e-value: 9.0E-9
score: 35.1
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 574..619
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 564..625
e-value: 1.2E-9
score: 39.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 577..614
score: 9.214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6723contigL-elsbetiae_contig6723:4194..8557 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6723.15467.1mRNA_L-elsbetiae_contig6723.15467.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6723 3112..8595 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6723.15467.1 ID=prot_L-elsbetiae_contig6723.15467.1|Name=mRNA_L-elsbetiae_contig6723.15467.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=627bp
MPIDTARAATDGDNRCDGARAAVPDGGGVPIRTDAVEFGAAAAGAAGLPA
SRAGCVKFDYGFGEGMNSALYGGDVSSRAGHGETWAVPQRSTLHNSSDVQ
DTADMVERLHAASRGRSGHVSRSPARRRHPAGEFCYVSAAPAAARLDDGS
GDHGHGNLGGVGYGAAGAAAGARDLAGYGGGGVHGFAGVGGVSDGADGGN
YAGASTGVSHRVPPDFAHAGVDAATHPSERAAPLAPYNGVNATTRFPYMP
PATAGLPAATPAYPFARGAPLPGGFGAAAPAMAGYPYASAEHRGTNAMNA
AAAAMGFVGIAPVPTTGLGGAAAAPPATGYAAAPPATGYPFPTPVASASP
STEYFGMIANTAAAAAAAAATADSGIGAHEAQESINDYGRPSLQTAVRLD
APTMENSIDPILQATRVGVERVGGGGSCGEGETSGASFGIGGEVTSGGDG
GRGDGAGGGDSARTGGGATTAVQQPDPHVEAVLRAADCQRFLPLFAASQV
DLQILSAMDDEDFKTLKDDKNPAATVPKGPQLKIKFHCKKKMKELGFDVG
SKADDGVSDCGGGADGKSDGTGSEGKCHTCRTEEIKIIFCPCGHKACCVT
CGEALEGQPCPICRIPVELASRFFTG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING