prot_L-elsbetiae_contig6690.15426.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6690.15426.1
Unique Nameprot_L-elsbetiae_contig6690.15426.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length246
Homology
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: A0A6H5JUF7_9PHAE (GCFC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF7_9PHAE)

HSP 1 Score: 380 bits (975), Expect = 2.950e-122
Identity = 206/249 (82.73%), Postives = 218/249 (87.55%), Query Frame = 0
Query:    1 ETDEGEDDLEGVLERFEWYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAEESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRDLAARGK-DGAAEG--GAAXXXXXXXXGAGASEALALCERAVELLPLDWMERPDASAPLASVRITVRLFG 246
            ETDEGEDDLEG LERFEWYRRLFDFS DIPPP+SAGYG DEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEIL+YDP EESLKTLLG+A  ALQ AV+ +CIP+IGA +TP GRAAA+RLVR+QASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRL PALR+L ARG   G A G   +A        GAG SEALALCERAVELLPLDWMER +ASAPLASVRIT RLFG
Sbjct:  691 ETDEGEDDLEGALERFEWYRRLFDFSEDIPPPDSAGYGADEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILIYDPTEESLKTLLGSAMRALQAAVQGVCIPLIGASSTPGGRAAAVRLVRIQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLVPALRELGARGNASGTAAGISNSAGHKGAAAMGAGWSEALALCERAVELLPLDWMERTNASAPLASVRITARLFG 939          
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: A0A4D9D9I3_9STRA (GCFC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9I3_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.080e-21
Identity = 66/181 (36.46%), Postives = 95/181 (52.49%), Query Frame = 0
Query:    5 GEDDLEGVLERFEWYRRLFDFS-----GDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAEESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRD 180
            G+D     +E F W+ RLF++      G +P  E       EDPD  LVPQLVEKVA+  +   LS  YD  S R+T   +SA+  +L+Y+P + +L++LL A    L+ A+  LC+P++G    P    +     R Q    LKL RN   W  +L+P  L  L LG L+  +L  AL +
Sbjct:  559 GKDFGAAAIEAFPWFERLFEYGQSQEEGSVPEQEG------EDPDDRLVPQLVEKVAVSRLEGLLSECYDPFSERETQRAISAIQGLLIYEPGKHALESLLRAPFSRLEKAITKLCLPLLG----PEAGISLWEFQRRQIFVALKLFRNACFWHQVLAPRPLASLVLGVLLDGKLASALEN 729          
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: W7TSY7_9STRA (Gc-rich sequence dna-binding factor 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSY7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.830e-21
Identity = 65/176 (36.93%), Postives = 94/176 (53.41%), Query Frame = 0
Query:    5 GEDDLEGVLERFEWYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAEESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRD 180
            G+D     +E F W+ RLF++ G      SA     EDPD  LVPQLVEKVA+  +   L+  YD  S R+T   +SA+  +L+Y+P + +L++LL A    L+ A+  LC+P++G    P    +     R Q    LKL RN   W  +L+P  L  L LG L+  +L  AL +
Sbjct:  397 GKDVGGAAIEAFPWFERLFEY-GQFQEEGSAPKQEGEDPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIYEPGKHALESLLRAPFSRLEKAITKLCLPLLG----PEAGISLWEFQRRQIFVALKLFRNVCFWHQVLAPRPLASLVLGVLLDGKLASALEN 567          
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: A0A7S2S690_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S690_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.780e-20
Identity = 68/165 (41.21%), Postives = 88/165 (53.33%), Query Frame = 0
Query:   18 WYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAEESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRDLA 182
            W   L D+ G     E +G   D+DPD  LVP +VE   +P V   L  AYD MS RQT  LV+AV E+L +D ++  L  LL A    L+ AV  LC+P+    +T  GR    R ++ Q   G+KLL N  AW  ++    L  LAL  L A +L PALR LA
Sbjct:   14 WVGELADYGG--VGEEDSGEQKDDDPDDRLVPAMVEAAVVPQVQRLLEEAYDPMSSRQTHTLVAAVDELLDFDLSQAILPGLLRAPLNRLRAAVDALCVPLASPEST-EGR----RFMQRQLFAGVKLLGNLAAWSHIVDAHVLADLALRRLAAGQLVPALRRLA 171          
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: A0A1Y1HYJ4_KLENI (Transcriptional regulators binding to the GC-rich sequences n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HYJ4_KLENI)

HSP 1 Score: 97.8 bits (242), Expect = 1.460e-19
Identity = 69/182 (37.91%), Postives = 100/182 (54.95%), Query Frame = 0
Query:    5 GEDDLEGVLERFEWYRRLFDFSGDIPPPESAGYGPD-EDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAE-ESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASR---GLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRDL 181
            GE   +GV     WY+ LF++        S G  PD +D D N+VP L+EKVALP++   ++  +D  S ++T  + +AVSE+ +Y P E E ++ LL A R  +   V  L +P      TP+  AAA + V + A      +++LRN + WRD+L P  L  LAL  LVA +L P LR L
Sbjct:  620 GEAGFDGVR----WYQELFEYGMG----NSNGAEPDPDDADANMVPTLIEKVALPILLHLITYCWDPQSTKRTVQIAAAVSEVQIYVPPESEPVRDLLSAVRSRIADVVEKLVVPAW----TPALLAAAPQAVAVSAEHFGAAVRVLRNIVLWRDILPPGDLETLALDQLVAAKLLPHLRTL 789          
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: A0A835YVY7_9STRA (GCFC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVY7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.040e-19
Identity = 74/233 (31.76%), Postives = 107/233 (45.92%), Query Frame = 0
Query:    6 EDDLEGVLERFEWYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAEESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRDLAARGKDGAAEGGAAXXXXXXXXGAGASEALALCERAVELLPLDWMERP---DASAPL 235
            +++++ V ERF W+R LFDF+  I  P +A Y  DEDPD +LVP+L+E  A+P +A  + +AYDA S   TA LV+                         L      LC+PV+G  A   G    + L   +     +L  N  AW  + +  +LVP+A+G++ A+R  PAL  L  RG+   A              A     + + ER   L P+ W   P   DA  PL
Sbjct:  773 DEEVDTVFERFAWFRCLFDFAEGIATPAAAEYATDEDPDADLVPKLLEAAAVPQLAAAIESAYDAGSAAATAHLVAXXXXXXXXXXXXXXXXXXXXXPLPPLXXXXXALCVPVVGPLAARGG---GVALAARRLWHAARLYHNAAAWDGVAAAAALVPIAIGEVAARRAAPALERLL-RGRAPPA--------------AAVRAVVPVIERFAALTPVAWRSCPGYADAVRPL 987          
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: UPI0018AF1B56 (transcriptional repressor ILP1 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AF1B56)

HSP 1 Score: 92.4 bits (228), Expect = 1.050e-17
Identity = 62/166 (37.35%), Postives = 92/166 (55.42%), Query Frame = 0
Query:   17 EWYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAE-ESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRDL 181
            +W+  LFD+     P +++ YGPD D D NL+P LVEKVALP++   ++  +D +S R+T   V A S ++ Y PA  E L+ LL   R  L  A+  L +P   A        AA +L   +    ++LLRN   W+D+L+   L  LAL DL+ K+L P +R +
Sbjct:  678 DWHELLFDYGL---PGKNSDYGPD-DADANLIPVLVEKVALPILHHEIAHCWDMLSTRRTENAVFATSLVINYIPASSEGLRELLSVVRSRLDEAIAGLSVPTWSALVMKVVPGAA-QLAAYRFGVSVRLLRNICLWKDILALPILEKLALDDLLGKKLLPHVRSI 838          
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: A0A7C9AF43_OPUST (GCFC domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AF43_OPUST)

HSP 1 Score: 90.5 bits (223), Expect = 4.790e-17
Identity = 61/167 (36.53%), Postives = 97/167 (58.08%), Query Frame = 0
Query:   18 WYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAE-ESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRDLAA 183
            W+  LFDF     P + + +GPD D D +LVP LVEKVALP++   ++  +D +S R+T   V+A S I+ Y PA  E+LK L+   R+ L  AV +L +P   A    +   AA R+   +    ++L+RN   W+D+L+   L  LAL +L+ +++ P +++L A
Sbjct:  684 WHSLLFDFGV---PEDGSEFGPD-DADADLVPSLVEKVALPILHHDIAHCWDMLSTRETKNAVAATSLIINYVPASSEALKELIATIRDRLAEAVSDLVVPTWSAVVMKAVPNAA-RMAAYRFGVAVRLMRNICMWKDVLAMPVLEKLALDELLGRKVLPHVQNLTA 845          
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: A0A2G5DIY3_AQUCA (GCFC domain-containing protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5DIY3_AQUCA)

HSP 1 Score: 87.8 bits (216), Expect = 4.030e-16
Identity = 64/171 (37.43%), Postives = 94/171 (54.97%), Query Frame = 0
Query:   17 EWYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAE-ESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASR---GLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRDLAA 183
            +W+  LFD+      PE+      ED D NLVP LVEK+ALP++  +++  +D +S R+T   VSA + ++ Y PA  E+L+ LL    + L  AV NL +P      TP    A     RL A R    ++LLRN   W+D+L+   L  LAL +L+A ++ P LR + A
Sbjct:  704 QWHSLLFDYGL----PENTTDLNPEDADANLVPGLVEKIALPILHHQIAQCWDMLSTRETRNAVSATNLVINYVPASSEALQELLTVINDRLADAVENLMVPAW----TPLVIKAVPNAARLAAYRFGMSIRLLRNICLWKDILALPVLEKLALDELLAGKILPHLRSVIA 866          
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: A0A803NDK2_CHEQI (GCFC domain-containing protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NDK2_CHEQI)

HSP 1 Score: 87.4 bits (215), Expect = 5.390e-16
Identity = 59/165 (35.76%), Postives = 94/165 (56.97%), Query Frame = 0
Query:   18 WYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAE-ESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRDL 181
            W+  LFD+     P + +G+ PD D D +LVP LVEKVALP++   ++  +D +S R++  +VSA + I+ Y PA  E+LK L+ A R  L  AV NL +P     A  +   AA R+   +    ++L+RN   W+D+L+   L  L L +L+  ++ P ++ L
Sbjct:  648 WHSLLFDYGV---PEDGSGFSPD-DADADLVPGLVEKVALPILHHDIAHCWDLLSSRESKNVVSATNLIIHYIPASSEALKELIAAVRTRLTEAVANLVVPTWSTVAMKAVPNAA-RVAAYRFGVAIRLMRNICMWKDILALPVLEKLVLDELLGGKILPHVQSL 807          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUF7_9PHAE2.950e-12282.73GCFC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A4D9D9I3_9STRA1.080e-2136.46GCFC domain-containing protein n=2 Tax=Monodopsida... [more]
W7TSY7_9STRA1.830e-2136.93Gc-rich sequence dna-binding factor 1 n=1 Tax=Nann... [more]
A0A7S2S690_9STRA4.780e-2041.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Y1HYJ4_KLENI1.460e-1937.91Transcriptional regulators binding to the GC-rich ... [more]
A0A835YVY7_9STRA2.040e-1931.76GCFC domain-containing protein n=1 Tax=Tribonema m... [more]
UPI0018AF1B561.050e-1737.35transcriptional repressor ILP1 n=1 Tax=Dioscorea c... [more]
A0A7C9AF43_OPUST4.790e-1736.53GCFC domain-containing protein n=1 Tax=Opuntia str... [more]
A0A2G5DIY3_AQUCA4.030e-1637.43GCFC domain-containing protein n=1 Tax=Aquilegia c... [more]
A0A803NDK2_CHEQI5.390e-1635.76GCFC domain-containing protein n=2 Tax=Chenopodium... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012890GC-rich sequence DNA-binding factorPANTHERPTHR12214GC-RICH SEQUENCE DNA-BINDING FACTORcoord: 13..235
NoneNo IPR availablePANTHERPTHR12214:SF0GC-RICH SEQUENCE DNA-BINDING FACTOR-LIKE PROTEINcoord: 13..235

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6690contigL-elsbetiae_contig6690:7266..9071 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6690.15426.1mRNA_L-elsbetiae_contig6690.15426.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6690 7266..9072 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6690.15426.1 ID=prot_L-elsbetiae_contig6690.15426.1|Name=mRNA_L-elsbetiae_contig6690.15426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=246bp
ETDEGEDDLEGVLERFEWYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQ
LVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAEESLKTLL
GAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCL
AWRDLLSPESLVPLALGDLVAKRLFPALRDLAARGKDGAAEGGAAGGAAK
KGAGAGASEALALCERAVELLPLDWMERPDASAPLASVRITVRLFG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012890GCFC