mRNA_L-elsbetiae_contig6690.15426.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: A0A6H5JUF7_9PHAE (GCFC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF7_9PHAE) HSP 1 Score: 380 bits (975), Expect = 2.950e-122 Identity = 206/249 (82.73%), Postives = 218/249 (87.55%), Query Frame = 1 Query: 1 ETDEGEDDLEGVLERFEWYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAEESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRDLAARGK-DGAAEG--GAAXXXXXXXXGAGASEALALCERAVELLPLDWMERPDASAPLASVRITVRLFG 738 ETDEGEDDLEG LERFEWYRRLFDFS DIPPP+SAGYG DEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEIL+YDP EESLKTLLG+A ALQ AV+ +CIP+IGA +TP GRAAA+RLVR+QASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRL PALR+L ARG G A G +A GAG SEALALCERAVELLPLDWMER +ASAPLASVRIT RLFG Sbjct: 691 ETDEGEDDLEGALERFEWYRRLFDFSEDIPPPDSAGYGADEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILIYDPTEESLKTLLGSAMRALQAAVQGVCIPLIGASSTPGGRAAAVRLVRIQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLVPALRELGARGNASGTAAGISNSAGHKGAAAMGAGWSEALALCERAVELLPLDWMERTNASAPLASVRITARLFG 939
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: A0A4D9D9I3_9STRA (GCFC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9I3_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.080e-21 Identity = 66/181 (36.46%), Postives = 95/181 (52.49%), Query Frame = 1 Query: 13 GEDDLEGVLERFEWYRRLFDFS-----GDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAEESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRD 540 G+D +E F W+ RLF++ G +P E EDPD LVPQLVEKVA+ + LS YD S R+T +SA+ +L+Y+P + +L++LL A L+ A+ LC+P++G P + R Q LKL RN W +L+P L L LG L+ +L AL + Sbjct: 559 GKDFGAAAIEAFPWFERLFEYGQSQEEGSVPEQEG------EDPDDRLVPQLVEKVAVSRLEGLLSECYDPFSERETQRAISAIQGLLIYEPGKHALESLLRAPFSRLEKAITKLCLPLLG----PEAGISLWEFQRRQIFVALKLFRNACFWHQVLAPRPLASLVLGVLLDGKLASALEN 729
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: W7TSY7_9STRA (Gc-rich sequence dna-binding factor 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSY7_9STRA) HSP 1 Score: 103 bits (256), Expect = 1.830e-21 Identity = 65/176 (36.93%), Postives = 94/176 (53.41%), Query Frame = 1 Query: 13 GEDDLEGVLERFEWYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAEESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRD 540 G+D +E F W+ RLF++ G SA EDPD LVPQLVEKVA+ + L+ YD S R+T +SA+ +L+Y+P + +L++LL A L+ A+ LC+P++G P + R Q LKL RN W +L+P L L LG L+ +L AL + Sbjct: 397 GKDVGGAAIEAFPWFERLFEY-GQFQEEGSAPKQEGEDPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIYEPGKHALESLLRAPFSRLEKAITKLCLPLLG----PEAGISLWEFQRRQIFVALKLFRNVCFWHQVLAPRPLASLVLGVLLDGKLASALEN 567
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: A0A7S2S690_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S690_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 4.780e-20 Identity = 68/165 (41.21%), Postives = 88/165 (53.33%), Query Frame = 1 Query: 52 WYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAEESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRDLA 546 W L D+ G E +G D+DPD LVP +VE +P V L AYD MS RQT LV+AV E+L +D ++ L LL A L+ AV LC+P+ +T GR R ++ Q G+KLL N AW ++ L LAL L A +L PALR LA Sbjct: 14 WVGELADYGG--VGEEDSGEQKDDDPDDRLVPAMVEAAVVPQVQRLLEEAYDPMSSRQTHTLVAAVDELLDFDLSQAILPGLLRAPLNRLRAAVDALCVPLASPEST-EGR----RFMQRQLFAGVKLLGNLAAWSHIVDAHVLADLALRRLAAGQLVPALRRLA 171
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: A0A1Y1HYJ4_KLENI (Transcriptional regulators binding to the GC-rich sequences n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HYJ4_KLENI) HSP 1 Score: 97.8 bits (242), Expect = 1.460e-19 Identity = 69/182 (37.91%), Postives = 100/182 (54.95%), Query Frame = 1 Query: 13 GEDDLEGVLERFEWYRRLFDFSGDIPPPESAGYGPD-EDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAE-ESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASR---GLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRDL 543 GE +GV WY+ LF++ S G PD +D D N+VP L+EKVALP++ ++ +D S ++T + +AVSE+ +Y P E E ++ LL A R + V L +P TP+ AAA + V + A +++LRN + WRD+L P L LAL LVA +L P LR L Sbjct: 620 GEAGFDGVR----WYQELFEYGMG----NSNGAEPDPDDADANMVPTLIEKVALPILLHLITYCWDPQSTKRTVQIAAAVSEVQIYVPPESEPVRDLLSAVRSRIADVVEKLVVPAW----TPALLAAAPQAVAVSAEHFGAAVRVLRNIVLWRDILPPGDLETLALDQLVAAKLLPHLRTL 789
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: A0A835YVY7_9STRA (GCFC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVY7_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 2.040e-19 Identity = 74/233 (31.76%), Postives = 107/233 (45.92%), Query Frame = 1 Query: 16 EDDLEGVLERFEWYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAEESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRDLAARGKDGAAEGGAAXXXXXXXXGAGASEALALCERAVELLPLDWMERP---DASAPL 705 +++++ V ERF W+R LFDF+ I P +A Y DEDPD +LVP+L+E A+P +A + +AYDA S TA LV+ L LC+PV+G A G + L + +L N AW + + +LVP+A+G++ A+R PAL L RG+ A A + + ER L P+ W P DA PL Sbjct: 773 DEEVDTVFERFAWFRCLFDFAEGIATPAAAEYATDEDPDADLVPKLLEAAAVPQLAAAIESAYDAGSAAATAHLVAXXXXXXXXXXXXXXXXXXXXXPLPPLXXXXXALCVPVVGPLAARGG---GVALAARRLWHAARLYHNAAAWDGVAAAAALVPIAIGEVAARRAAPALERLL-RGRAPPA--------------AAVRAVVPVIERFAALTPVAWRSCPGYADAVRPL 987
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: UPI0018AF1B56 (transcriptional repressor ILP1 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AF1B56) HSP 1 Score: 92.4 bits (228), Expect = 1.050e-17 Identity = 62/166 (37.35%), Postives = 92/166 (55.42%), Query Frame = 1 Query: 49 EWYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAE-ESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRDL 543 +W+ LFD+ P +++ YGPD D D NL+P LVEKVALP++ ++ +D +S R+T V A S ++ Y PA E L+ LL R L A+ L +P A AA +L + ++LLRN W+D+L+ L LAL DL+ K+L P +R + Sbjct: 678 DWHELLFDYGL---PGKNSDYGPD-DADANLIPVLVEKVALPILHHEIAHCWDMLSTRRTENAVFATSLVINYIPASSEGLRELLSVVRSRLDEAIAGLSVPTWSALVMKVVPGAA-QLAAYRFGVSVRLLRNICLWKDILALPILEKLALDDLLGKKLLPHVRSI 838
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: A0A7C9AF43_OPUST (GCFC domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AF43_OPUST) HSP 1 Score: 90.5 bits (223), Expect = 4.790e-17 Identity = 61/167 (36.53%), Postives = 97/167 (58.08%), Query Frame = 1 Query: 52 WYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAE-ESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRDLAA 549 W+ LFDF P + + +GPD D D +LVP LVEKVALP++ ++ +D +S R+T V+A S I+ Y PA E+LK L+ R+ L AV +L +P A + AA R+ + ++L+RN W+D+L+ L LAL +L+ +++ P +++L A Sbjct: 684 WHSLLFDFGV---PEDGSEFGPD-DADADLVPSLVEKVALPILHHDIAHCWDMLSTRETKNAVAATSLIINYVPASSEALKELIATIRDRLAEAVSDLVVPTWSAVVMKAVPNAA-RMAAYRFGVAVRLMRNICMWKDVLAMPVLEKLALDELLGRKVLPHVQNLTA 845
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: A0A2G5DIY3_AQUCA (GCFC domain-containing protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5DIY3_AQUCA) HSP 1 Score: 87.8 bits (216), Expect = 4.030e-16 Identity = 64/171 (37.43%), Postives = 94/171 (54.97%), Query Frame = 1 Query: 49 EWYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAE-ESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASR---GLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRDLAA 549 +W+ LFD+ PE+ ED D NLVP LVEK+ALP++ +++ +D +S R+T VSA + ++ Y PA E+L+ LL + L AV NL +P TP A RL A R ++LLRN W+D+L+ L LAL +L+A ++ P LR + A Sbjct: 704 QWHSLLFDYGL----PENTTDLNPEDADANLVPGLVEKIALPILHHQIAQCWDMLSTRETRNAVSATNLVINYVPASSEALQELLTVINDRLADAVENLMVPAW----TPLVIKAVPNAARLAAYRFGMSIRLLRNICLWKDILALPVLEKLALDELLAGKILPHLRSVIA 866
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Match: A0A803NDK2_CHEQI (GCFC domain-containing protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NDK2_CHEQI) HSP 1 Score: 87.4 bits (215), Expect = 5.390e-16 Identity = 59/165 (35.76%), Postives = 94/165 (56.97%), Query Frame = 1 Query: 52 WYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQLVEKVALPLVAERLSTAYDAMSRRQTACLVSAVSEILVYDPAE-ESLKTLLGAAREALQTAVRNLCIPVIGACATPSGRAAAIRLVRLQASRGLKLLRNCLAWRDLLSPESLVPLALGDLVAKRLFPALRDL 543 W+ LFD+ P + +G+ PD D D +LVP LVEKVALP++ ++ +D +S R++ +VSA + I+ Y PA E+LK L+ A R L AV NL +P A + AA R+ + ++L+RN W+D+L+ L L L +L+ ++ P ++ L Sbjct: 648 WHSLLFDYGV---PEDGSGFSPD-DADADLVPGLVEKVALPILHHDIAHCWDLLSSRESKNVVSATNLIIHYIPASSEALKELIAAVRTRLTEAVANLVVPTWSTVAMKAVPNAA-RVAAYRFGVAIRLMRNICMWKDILALPVLEKLVLDELLGGKILPHVQSL 807 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6690.15426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6690.15426.1 >prot_L-elsbetiae_contig6690.15426.1 ID=prot_L-elsbetiae_contig6690.15426.1|Name=mRNA_L-elsbetiae_contig6690.15426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=246bp ETDEGEDDLEGVLERFEWYRRLFDFSGDIPPPESAGYGPDEDPDQNLVPQback to top mRNA from alignment at L-elsbetiae_contig6690:7266..9072+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6690.15426.1 ID=mRNA_L-elsbetiae_contig6690.15426.1|Name=mRNA_L-elsbetiae_contig6690.15426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1807bp|location=Sequence derived from alignment at L-elsbetiae_contig6690:7266..9072+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6690:7266..9072+ >mRNA_L-elsbetiae_contig6690.15426.1 ID=mRNA_L-elsbetiae_contig6690.15426.1|Name=mRNA_L-elsbetiae_contig6690.15426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1476bp|location=Sequence derived from alignment at L-elsbetiae_contig6690:7266..9072+ (Laminarionema elsbetiae ELsaHSoW15)back to top |