mRNA_L-elsbetiae_contig6624.15352.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6624.15352.1
Unique NamemRNA_L-elsbetiae_contig6624.15352.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6624.15352.1 vs. uniprot
Match: D7FX28_ECTSI (Foie-gras_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX28_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 4.390e-42
Identity = 93/140 (66.43%), Postives = 104/140 (74.29%), Query Frame = 1 
Query:    1 SEPPEEAASEELRVTVDASRLLLRLSGRFSAEEASAGDGVVLRVALLSLLPLETRLERIELSFNHSALNCTVRDLRAAAKDDGVAAATFS---STSSC----EHSADLTLPPGGLLRTDVGICLPWEPLPSDEPLRLVEA 399
            S PPE  ASE L VTVD S LLLRLSGRFSA EASAGDG+ LRVAL+SLLPL+TRLE IEL+FNHSALNCT+RD ++        AA  S   S+SSC    + SADLTL  GGLL  +VG+CLPW  LPS EPLRLVEA
Sbjct:  684 SVPPEGPASERLEVTVDDSLLLLRLSGRFSAAEASAGDGLALRVALMSLLPLDTRLEAIELAFNHSALNCTIRDTQSTGPAGATPAAGNSDPPSSSSCPDQQQPSADLTLRAGGLLTANVGLCLPWSGLPSSEPLRLVEA 823
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BLAST of mRNA_L-elsbetiae_contig6624.15352.1 vs. uniprot
Match: A0A6H5J7Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Z5_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 6.960e-15
Identity = 46/80 (57.50%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:  181 LSFNHSALNCTVRDLRAAAKDDGVAAAT---FSSTSSC----EHSADLTLPPGGLLRTDVGICLPWEPLPSDEPLRLVEA 399
            L+FNHSALNCT+RD R+        AA        SSC    +HSADLTL  GGLL  +VG+CLPW  LPS EPLRLVEA
Sbjct:  231 LAFNHSALNCTIRDTRSTGPAGAPPAAENXXXXXXSSCPDPQQHSADLTLRAGGLLTANVGLCLPWSALPSSEPLRLVEA 310
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6624.15352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX28_ECTSI4.390e-4266.43Foie-gras_1 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5J7Z5_9PHAE6.960e-1557.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6624contigL-elsbetiae_contig6624:6498..8179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue1e-37
Seed eggNOG ortholog2880.D7FX28
KEGG koko:K02575,ko:K20308
KEGG TC2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of protein complex stability
EggNOG OGsKOG4386@1,KOG4386@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko04131
Exons3
Model size402
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6624.15352.1prot_L-elsbetiae_contig6624.15352.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6624 6500..8179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816734.0051098-CDS-L-elsbetiae_contig6624:6499..67181622816734.0051098-CDS-L-elsbetiae_contig6624:6499..6718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6624 6500..6718 -
1691683773.7068775-CDS-L-elsbetiae_contig6624:6499..67181691683773.7068775-CDS-L-elsbetiae_contig6624:6499..6718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6624 6500..6718 -
1622816734.0188775-CDS-L-elsbetiae_contig6624:7177..73271622816734.0188775-CDS-L-elsbetiae_contig6624:7177..7327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6624 7178..7327 -
1691683773.72249-CDS-L-elsbetiae_contig6624:7177..73271691683773.72249-CDS-L-elsbetiae_contig6624:7177..7327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6624 7178..7327 -
1622816734.0355453-CDS-L-elsbetiae_contig6624:8149..81791622816734.0355453-CDS-L-elsbetiae_contig6624:8149..8179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6624 8150..8179 -
1691683773.7332463-CDS-L-elsbetiae_contig6624:8149..81791691683773.7332463-CDS-L-elsbetiae_contig6624:8149..8179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6624 8150..8179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6624.15352.1

>prot_L-elsbetiae_contig6624.15352.1 ID=prot_L-elsbetiae_contig6624.15352.1|Name=mRNA_L-elsbetiae_contig6624.15352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
SEPPEEAASEELRVTVDASRLLLRLSGRFSAEEASAGDGVVLRVALLSLL
PLETRLERIELSFNHSALNCTVRDLRAAAKDDGVAAATFSSTSSCEHSAD
LTLPPGGLLRTDVGICLPWEPLPSDEPLRLVEA
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mRNA from alignment at L-elsbetiae_contig6624:6498..8179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6624.15352.1 ID=mRNA_L-elsbetiae_contig6624.15352.1|Name=mRNA_L-elsbetiae_contig6624.15352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1682bp|location=Sequence derived from alignment at L-elsbetiae_contig6624:6498..8179- (Laminarionema elsbetiae ELsaHSoW15)
AGCGAACCCCCCGAAGAAGCGGCGTCTGAGGTGGGTTTTTGCGGAGCGCC
CGGGTGCGTGGTTGTTCCCTCGCCCCGACGAGGCGTGTTTTTTGGGGCGC
GGGGGGGGGGGGGGGGGTGTGGGGGTTGGGGGTTTGTCTGGGGGGGGGGG
GTTTTTTTTTTTTGGTCGCCACGGGGGGGGGGGGTGGGGGGGGGGGGGGG
NNNNNNNNNNCACCCCGCCCCCCCCCCCCCCCTCCTGTGCTGTGTGACCC
CGGTTGGGTCGTCTAGCTAGTGTAGTGGAGTATGGGGGGGGGGCTTGTGT
GGCTTGTGGCTTTGTCTGGTGGCGGTGCGTTTTGTTTTTTTGGTCGCCAC
GGCGGTGTGGTGTGGTGGTGGCGCGGTGGTGGCGGTGATGGGACCGGGCG
TGTTTTGGCTGTTTAGGGGTGGATCCATCGGTAGCAATCGTCGTCGTCGT
ATATAGTCGGGTCGTGCCGAAGCCGCTCTTTGGTTCCTGTTCTTTAGCAA
CTCCCGATGTAGCAGGCACGCATCTACTGCGATTTATTAATAGCTGCTCT
TACAAAATCGTTGCTCCAAGGCGGCGGTGGAGTCAGCTGGACTCAATCAA
TCGTCTTCAAAACCGCGTGCGTGCCGATTGCTGTATTTTAATTTTATTTT
TTTTCCCTTTTTCTGCCCGTCCGTCGCCAACACGAACCACCTTCCCCCAC
GATACCAATCGAGGCACGACGCGCAGCGACTGTGCCCCGAACAGCCCTCC
CCCCCCCCACATCCCCACATACCACGGGCCTTCTCTTTCCACCGCCACCG
GTCCTCCGTGTTGTGCTTGTCCTCTTGCCGTTGCCGAACGAAAAATACGC
AGGAGCTCCGGGTGACGGTGGACGCCTCGCGGCTCCTGCTCAGGCTGTCG
GGAAGGTTTTCCGCCGAAGAGGCGTCGGCCGGCGACGGGGTGGTCCTCAG
GGTGGCGCTGCTGTCCCTTTTGCCGCTGGAGACTCGCCTAGAGCGCATTG
AGGTAAAAACTAGGAGGGCGGGGTGGGGGGGGGGGGGTTATATCTTGGTC
GAATAAAGAGAGCGTGTTGCAGGGGTTTCTTCTCTCTGCTGCCGTGCTTT
TGTTTTTTTTTTTTCTTTGTTGCGCCGCGTTTTCGCGAGCGCGGTAGTCT
TCTCCGGAGATTACGTGCGGGCTGTCCTCTGTCGGTCGTTTTTCTTGGCA
CACCACTGACACTGCCATCGCGCGGATCGGGGGACACCCACCGAACACCA
ACACGGCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGATTTTCGTC
TTCCTCCCTCTTGGTGATCACGCCTTGCTTTTTCGACCCACCCTCAGCCG
CCTGTGCCCCCTCCCTGAACTCACCATCGCACATAATTCGTTTCCCGTTC
TCTCTCACTCCTCCCCCCCCCCCCCCCCCCCCCCCTCCACTCTGTTTTGT
AACTCTGATAGCTCTCGTTCAACCACTCGGCGCTCAACTGCACCGTCCGA
GACTTGCGGGCCGCGGCCAAGGACGACGGCGTGGCGGCGGCGACTTTCTC
GTCCACCTCCTCCTGCGAGCACTCGGCTGACCTAACGCTGCCGCCGGGGG
GGCTGCTAAGGACGGACGTCGGCATCTGCTTGCCGTGGGAACCGCTGCCT
TCCGACGAGCCGCTGCGGCTGGTCGAGGCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6624:6498..8179-

>mRNA_L-elsbetiae_contig6624.15352.1 ID=mRNA_L-elsbetiae_contig6624.15352.1|Name=mRNA_L-elsbetiae_contig6624.15352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig6624:6498..8179- (Laminarionema elsbetiae ELsaHSoW15)
AGCGAACCCCCCGAAGAAGCGGCGTCTGAGAGCGAACCCCCCGAAGAAGC
GGCGTCTGAGGAGCTCCGGGTGACGGTGGACGCCTCGCGGCTCCTGCTCA
GGCTGTCGGGAAGGTTTTCCGCCGAAGAGGCGTCGGCCGGCGACGGGGTG
GTCCTCAGGGTGGCGCTGCTGTCCCTTTTGCCGCTGGAGACTCGCCTAGA
GCGCATTGAGGAGCTCCGGGTGACGGTGGACGCCTCGCGGCTCCTGCTCA
GGCTGTCGGGAAGGTTTTCCGCCGAAGAGGCGTCGGCCGGCGACGGGGTG
GTCCTCAGGGTGGCGCTGCTGTCCCTTTTGCCGCTGGAGACTCGCCTAGA
GCGCATTGAGCTCTCGTTCAACCACTCGGCGCTCAACTGCACCGTCCGAG
ACTTGCGGGCCGCGGCCAAGGACGACGGCGTGGCGGCGGCGACTTTCTCG
TCCACCTCCTCCTGCGAGCACTCGGCTGACCTAACGCTGCCGCCGGGGGG
GCTGCTAAGGACGGACGTCGGCATCTGCTTGCCGTGGGAACCGCTGCCTT
CCGACGAGCCGCTGCGGCTGGTCGAGGCCCTCTCGTTCAACCACTCGGCG
CTCAACTGCACCGTCCGAGACTTGCGGGCCGCGGCCAAGGACGACGGCGT
GGCGGCGGCGACTTTCTCGTCCACCTCCTCCTGCGAGCACTCGGCTGACC
TAACGCTGCCGCCGGGGGGGCTGCTAAGGACGGACGTCGGCATCTGCTTG
CCGTGGGAACCGCTGCCTTCCGACGAGCCGCTGCGGCTGGTCGAGGCC
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