mRNA_L-elsbetiae_contig6624.15349.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6624.15349.1
Unique NamemRNA_L-elsbetiae_contig6624.15349.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6624.15349.1 vs. uniprot
Match: D7FX28_ECTSI (Foie-gras_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX28_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 3.470e-74
Identity = 138/209 (66.03%), Postives = 152/209 (72.73%), Query Frame = 1 
Query:  121 DGGPGASVKWATLPNGPVLHDETPAAAA-------VIALPGTGDSHTCCFSAKGHADCPAPLGKLRVTWRPRXXXXXXXXXXXXXXXXXXAAVLLPLDQTAAAGSAVTEFPLPVLSARPPALSARLKAPPHARVGEEFSMSWEISNPTAAYSSLRLTAEDGGEFVWSGKRLCLLQVAPMETVSVVYRLVPKVPGHVLLPLVAAVPVREK 726
            D G   +V WATLPNGPVLHD+  A AA       V+ALPGTGD++TCCF+AKG A+ PAPLGKLRVTWRP                   AAV             VTEFPLPVL+ARPPALSARLKAPPHARVG EFSMSWEISN TA YSS++LT EDGG+F+WSGKRLC+LQVAPMETVSVVYRLVP VPGHVLLP VA VP RE+
Sbjct: 1229 DSGAEGTVTWATLPNGPVLHDDDSATAASGGSDGGVVALPGTGDTYTCCFAAKGEAERPAPLGKLRVTWRPDETGEGDGPTTSPTTGGGEAAV-----------GGVTEFPLPVLTARPPALSARLKAPPHARVGVEFSMSWEISNLTAVYSSMQLTTEDGGDFIWSGKRLCMLQVAPMETVSVVYRLVPIVPGHVLLPKVAVVPEREQ 1426
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BLAST of mRNA_L-elsbetiae_contig6624.15349.1 vs. uniprot
Match: A0A6H5J7Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Z5_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 5.990e-74
Identity = 137/212 (64.62%), Postives = 151/212 (71.23%), Query Frame = 1 
Query:  121 DGGPGASVKWATLPNGPVLHDETPAAAA----------VIALPGTGDSHTCCFSAKGHADCPAPLGKLRVTWRPRXXXXXXXXXXXXXXXXXXAAVLLPLDQTAAAGSAVTEFPLPVLSARPPALSARLKAPPHARVGEEFSMSWEISNPTAAYSSLRLTAEDGGEFVWSGKRLCLLQVAPMETVSVVYRLVPKVPGHVLLPLVAAVPVREK 726
            DGG   +V WATLPNGPVLHD+  A             V+ALPGTGD++TCCF+AKG A+ PAPLGKLRVTWRP                   AAV             VTEFPLPVL+ARPPALSARLKAPPHARVG EFSMSWEISN TA YS+++LT EDGG+FVWSGKRLC+LQVAPMETVSVVYRLVP VPGHVLLP VA VP RE+
Sbjct:  713 DGGAEGTVTWATLPNGPVLHDDDAAXXXXXXXXXXXXXVVALPGTGDTYTCCFTAKGEAERPAPLGKLRVTWRPDDTGGGDGPTTSPATGGGEAAV-----------GGVTEFPLPVLTARPPALSARLKAPPHARVGVEFSMSWEISNLTAVYSAMQLTTEDGGDFVWSGKRLCMLQVAPMETVSVVYRLVPIVPGHVLLPKVAVVPEREQ 913
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BLAST of mRNA_L-elsbetiae_contig6624.15349.1 vs. uniprot
Match: A0A7S2V3J5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3J5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.560e-11
Identity = 35/71 (49.30%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:  484 PPHARVGEEFSMSWEISNPTAAYSSLRLTAEDGGEFVWSGKRLCLLQVAPMETVSVVYRLVPKVPGHVLLP 696
            P  A+VGE FSM WE+ N    +  L L    GG F+W+G R C LQVAP E   V Y LVP   GH+ LP
Sbjct:    1 PSQAKVGEAFSMCWEVLNRGRYHDQLNLAGAGGGNFLWAGHRHCTLQVAPGELHKVSYTLVPLATGHLELP 71
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6624.15349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FX28_ECTSI3.470e-7466.03Foie-gras_1 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5J7Z5_9PHAE5.990e-7464.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V3J5_9STRA1.560e-1149.30Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6624contigL-elsbetiae_contig6624:1090..4384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.9
Seed ortholog evalue9.3e-66
Seed eggNOG ortholog2880.D7FX28
KEGG koko:K02575,ko:K20308
KEGG TC2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of protein complex stability
EggNOG OGsKOG4386@1,KOG4386@2759
Ec32 ortholog descriptionDomain of unknown function DUF1683, C-terminal
Ec32 orthologEc-10_004060.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko04131
Exons3
Model size728
Cds size726
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6624.15349.1prot_L-elsbetiae_contig6624.15349.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6624 1090..4384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816733.8478262-CDS-L-elsbetiae_contig6624:1089..11911622816733.8478262-CDS-L-elsbetiae_contig6624:1089..1191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6624 1090..1191 -
1691683773.608927-CDS-L-elsbetiae_contig6624:1089..11911691683773.608927-CDS-L-elsbetiae_contig6624:1089..1191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6624 1090..1191 -
1622816733.8581111-CDS-L-elsbetiae_contig6624:2267..23701622816733.8581111-CDS-L-elsbetiae_contig6624:2267..2370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6624 2268..2370 -
1691683773.620217-CDS-L-elsbetiae_contig6624:2267..23701691683773.620217-CDS-L-elsbetiae_contig6624:2267..2370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6624 2268..2370 -
1622816733.8682284-CDS-L-elsbetiae_contig6624:3863..43841622816733.8682284-CDS-L-elsbetiae_contig6624:3863..4384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6624 3864..4384 -
1691683773.6293437-CDS-L-elsbetiae_contig6624:3863..43841691683773.6293437-CDS-L-elsbetiae_contig6624:3863..4384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6624 3864..4384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6624.15349.1

>prot_L-elsbetiae_contig6624.15349.1 ID=prot_L-elsbetiae_contig6624.15349.1|Name=mRNA_L-elsbetiae_contig6624.15349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=242bp
MEVVPPSAAPPPPASSTTTATLTAAAATAAAASSPAGTASDGGPGASVKW
ATLPNGPVLHDETPAAAAVIALPGTGDSHTCCFSAKGHADCPAPLGKLRV
TWRPRPGPEEAAATGDGSGSGDGAAVLLPLDQTAAAGSAVTEFPLPVLSA
RPPALSARLKAPPHARVGEEFSMSWEISNPTAAYSSLRLTAEDGGEFVWS
GKRLCLLQVAPMETVSVVYRLVPKVPGHVLLPLVAAVPVREK
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mRNA from alignment at L-elsbetiae_contig6624:1090..4384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6624.15349.1 ID=mRNA_L-elsbetiae_contig6624.15349.1|Name=mRNA_L-elsbetiae_contig6624.15349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3295bp|location=Sequence derived from alignment at L-elsbetiae_contig6624:1090..4384- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGTCGTGCCCCCGTCCGCCGCCCCCCCCCCCCCCGCTTCATCCAC
CACAACCGCCACGCTGACCGCCGCCGCCGCCACTGCCGCCGCCGCATCGA
GCCCGGCCGGAACCGCCTCGGATGGAGGCCCCGGCGCCTCGGTAAAGTGG
GCGACCCTCCCGAACGGCCCCGTCCTGCACGACGAAACCCCCGCGGCGGC
GGCGGTGATTGCCCTCCCGGGAACGGGCGACAGCCACACCTGCTGCTTCT
CGGCGAAGGGGCACGCCGACTGCCCGGCCCCTCTCGGAAAGCTCAGGGTC
ACGTGGAGACCGAGACCGGGGCCGGAGGAGGCCGCGGCGACGGGGGACGG
GAGCGGGAGCGGGGACGGCGCGGCGGTGCTTCTTCCCCTCGACCAGACGG
CGGCGGCGGGTTCGGCTGTGACTGAGTTCCCGCTTCCTGTGCTGAGCGCG
CGGCCTCCCGCCTTGTCGGCGAGACTGAAGGCCCCCCCTCACGCGCGAGT
CGGGGAAGAGTTCTCGATGAGGTGAGGAAGGCGTTTTTTTGGGAGGGCGA
CGATACGTATGTATGTACAGCGGTACAATATTTTTATAAAGTGTTTTTTT
TTTTAATTCATTATTACATATTCCCTGCACGGAAAAAACGGCGTATAAAC
TGCCAGCAAGGATAATCGAACTCCAGTCGGGCAAACGAAATAGTAGATAG
TTATCCCCTACACCGCGCGCTTTTCGTTACAACGTAGCGTGAAAACTCTC
TTCTATTACCAAAAAAAGACAGAAATCCCTGCATCCAGGCCCCAAATAGC
AGTGCAGCCCGGCGGGTGCGTACTGGCATTTTCTGTAGCCTGCGCTGAAG
AACAATTCGATCTGGGTTCCTCTCACTTGCCAACCATGTTTTCCAACAGT
TGCACGTAGAGCCAGATTTAATAAACCCATACAAAAAAAAGTCAGTAAGC
ATTTTCCGACTTTTAGGAGACGATATATAGAGTCATTGATAAATTGACGT
TACAAACGCGCCGTGAAGGCGTATATCGCATGCGTACATCGCATGCGTAT
TGTTTTTATTTTTAAAAATAAACAATGAATCAAAGATGGAACCTAACCCA
CACTAGAGCAAGGGCTCGATATGGGTTTCAATCGGCATTCTAATACAGTG
ACGTAATATTTAGCGAAACGAGCAGGAAAACGCCTGACATATCAGAAGAG
TTCAACATCTCCCCTGCAAAGATTTGCTAGGTCGGCCAACAAGTATTCCG
GCGGGTAGATGCCCGCCATGATGCCGTAATGTTGTCAGTACTTCGAAATA
GGAACACATCGCACTGTTGAACTAAATCAAAATGCTGGTTTAATATATGT
GGGTTGTTGCTTTGAGGAGAACATACAATATAATGGTAGGTGATGAGGTA
ATAGCCAGGATTGGGAGGGATGGTATCTAGCGTGTGTCAGAAAATAGTGT
GGGTATTACATCTTCCGTATGACAAATAAAGATGTAAGAGAGGTAGTATG
TACACGGCGCAGGAATGCATTAACTAGATAATTGGCTGAGTGATTTGGGA
TTTGAGGATTACTAAGCAGGGGTGAAGGTAAGATGTCGCCTTGTGTACGA
TGTGTTGTGTACGCGAGATATAACGCACTGACTGCTGTATGTGTATAGTT
CAACAGCTGCTCGGTCCTCCAAAAACAGGAACATTTTTTTAAGATCCAAA
AACTACGTTCGAAAGCTGGTTGAACACACACACACCATATCCGTAGACAT
GGTAAAAGACGGTGGTAGTATCACATCTGCTGTGGATTCTTTTTGTCTCA
GTGTACTGCTGCTGTCTAGTGAAGATGCTACCCTTGGTGAAGCACAGCCG
GTTCCATAAGAAGGAGGGAAGGCCCTAACTTGTCGCCCTTCGATCCCACC
TCGCTTCTCCTGCCATGGTACATTCACTGATGGCAAATCCATGTTTTGTT
CTCCTCGAAAGAACCGCCGCCGCCGCCGCCGCCGCCGCTATTGCCGCGTT
TGTTGTCCCGCCAGCTGGGAGATATCGAACCCGACCGCGGCCTACTCGTC
CTTGCGGCTCACGGCGGAGGACGGCGGCGAGTTCGTCTGGAGCGGGAAGC
GCTTGTGTCTGCTGCAGGTAATTCATTATCCGAGCGCCGCCGGCGGTTTA
ACGCTGGTGGTGCGGACAAACGTGAAGGGGAGTGATTAAGCGCGTGGCGC
TGTATTGGCACAGGACCCACCCGCGTGCGCCCAGATCCTATTGGTTGAAC
CCTCTTAGTATGGGCGCACGTGTGGCTCTCGGTCGCGGGGGTTCGGATTC
AGGCGGACCTTGCATGCGGTTTGCTCTCGTTCTGAGTGGTCGAGAGGGTG
CGGACGAATCCCGCGGTGCACGTGCGCCGAAGAAGAGAAAGGCGTTGCTT
GGCCTCCGCCCCCCGATGCCGCGGTGTTGTCTATTTTGCCGGTAAGAAAC
AACCTGAAACGGCCTCTCGAGACATGACGGAAGACGATCCGCGTGTAGCA
TGCATGTGCTGTTGCCCGGCTGCGGTCCTAGTGTTGTTGCTGGCGTGGCT
GGCTTAAGTCATATGGTGGGGAAGAGCCCAAGAGCCAACATATTTTTACT
GGCTTTTGAACAAACGCCACTAGCAGCAGCAGCAGTGGCCGCGAAGGGAT
AACAGCGGTGTTTGTTTTTCCAAGTATGCACGTCAGCGCATTGTACGTGC
ATTAGTTGGATCTACGTTCCATAGTATTTTTGTTCTTGTGTGGATAGATA
ACAAATGTTGTACAAGTGTCAGCGGATCTTCATACGTCCAATCCGTGAAG
AAGTCGTTCCGTTCCCAGGGGGGGGGGGGCTGCTGTTGTAGGGAAAAGGT
AACCCTCACTCCCCGTCCCAAGTTACCTGCGATGCACAATATCCGTACCT
GTGTACACTTTAAACAATTTTTCAAGATACATACAGATGTCAGCGGTTCT
ACATTTTTACGTAGTGTTGATCAGTGACAGCAACCCTGGCAGTCTCAGCA
ACGAAAAGGCAGAGCCCCCCCCCCCCCCCCGGGACAAGAAAACGGCGGTA
CATACCTCGTTTTTCGCCGCGTGATCACGGTGCATACATAGCTTGGGGTT
CCACTCCTCCACCCACTGGACCCCTTTATCGTCGTTATGGGTTCGTTGGC
ATCGGTTCTGTTGCACCTCTTCTGTATTCTATCCGACCGGCAGGTGGCGC
CGATGGAAACGGTCTCCGTGGTGTACCGCTTGGTGCCGAAGGTACCCGGG
CACGTGCTGCTGCCTTTGGTTGCGGCGGTTCCAGTCAGGGAAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6624:1090..4384-

>mRNA_L-elsbetiae_contig6624.15349.1 ID=mRNA_L-elsbetiae_contig6624.15349.1|Name=mRNA_L-elsbetiae_contig6624.15349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1452bp|location=Sequence derived from alignment at L-elsbetiae_contig6624:1090..4384- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGTCGTGCCCCCGTCCGCCGCCCCCCCCCCCCCCGCTTCATCCAC
CACAACCGCCACGCTGACCGCCGCCGCCGCCACTGCCGCCGCCGCATCGA
GCCCGGCCGGAACCGCCTCGGATGGAGGCCCCGGCGCCTCGGTAAAGTGG
GCGACCCTCCCGAACGGCCCCGTCCTGCACGACGAAACCCCCGCGGCGGC
GGCGGTGATTGCCCTCCCGGGAACGGGCGACAGCCACACCTGCTGCTTCT
CGGCGAAGGGGCACGCCGACTGCCCGGCCCCTCTCGGAAAGCTCAGGGTC
ACGTGGAGACCGAGACCGGGGCCGGAGGAGGCCGCGGCGACGGGGGACGG
GAGCGGGAGCGGGGACGGCGCGGCGGTGCTTCTTCCCCTCGACCAGACGG
CGGCGGCGGGTTCGGCTGTGACTGAGTTCCCGCTTCCTGTGCTGAGCGCG
CGGCCTCCCGCCTTGTCGGCGAGACTGAAGGCCCCCCCTCACGCGCGAGT
CGGGGAAGAGTTCTCGATGAGATGGAGGTCGTGCCCCCGTCCGCCGCCCC
CCCCCCCCCCGCTTCATCCACCACAACCGCCACGCTGACCGCCGCCGCCG
CCACTGCCGCCGCCGCATCGAGCCCGGCCGGAACCGCCTCGGATGGAGGC
CCCGGCGCCTCGGTAAAGTGGGCGACCCTCCCGAACGGCCCCGTCCTGCA
CGACGAAACCCCCGCGGCGGCGGCGGTGATTGCCCTCCCGGGAACGGGCG
ACAGCCACACCTGCTGCTTCTCGGCGAAGGGGCACGCCGACTGCCCGGCC
CCTCTCGGAAAGCTCAGGGTCACGTGGAGACCGAGACCGGGGCCGGAGGA
GGCCGCGGCGACGGGGGACGGGAGCGGGAGCGGGGACGGCGCGGCGGTGC
TTCTTCCCCTCGACCAGACGGCGGCGGCGGGTTCGGCTGTGACTGAGTTC
CCGCTTCCTGTGCTGAGCGCGCGGCCTCCCGCCTTGTCGGCGAGACTGAA
GGCCCCCCCTCACGCGCGAGTCGGGGAAGAGTTCTCGATGAGCTGGGAGA
TATCGAACCCGACCGCGGCCTACTCGTCCTTGCGGCTCACGGCGGAGGAC
GGCGGCGAGTTCGTCTGGAGCGGGAAGCGCTTGTGTCTGCTGCAGCTGGG
AGATATCGAACCCGACCGCGGCCTACTCGTCCTTGCGGCTCACGGCGGAG
GACGGCGGCGAGTTCGTCTGGAGCGGGAAGCGCTTGTGTCTGCTGCAGGT
GGCGCCGATGGAAACGGTCTCCGTGGTGTACCGCTTGGTGCCGAAGGTAC
CCGGGCACGTGCTGCTGCCTTTGGTTGCGGCGGTTCCAGTCAGGGAAAAG
GTGGCGCCGATGGAAACGGTCTCCGTGGTGTACCGCTTGGTGCCGAAGGT
ACCCGGGCACGTGCTGCTGCCTTTGGTTGCGGCGGTTCCAGTCAGGGAAA
AG
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