mRNA_L-elsbetiae_contig6621.15345.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6621.15345.1
Unique NamemRNA_L-elsbetiae_contig6621.15345.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6621.15345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6621contigL-elsbetiae_contig6621:1712..2266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-08_004390.1
Exons1
Model size556
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816733.49342-CDS-L-elsbetiae_contig6621:1711..22661622816733.49342-CDS-L-elsbetiae_contig6621:1711..2266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6621 1712..2266 +
1691683773.337595-CDS-L-elsbetiae_contig6621:1711..22661691683773.337595-CDS-L-elsbetiae_contig6621:1711..2266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6621 1712..2266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6621.15345.1prot_L-elsbetiae_contig6621.15345.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6621 1712..2266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6621.15345.1

>prot_L-elsbetiae_contig6621.15345.1 ID=prot_L-elsbetiae_contig6621.15345.1|Name=mRNA_L-elsbetiae_contig6621.15345.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
IWSLCDPALTGSIRQPGFFAAMRLIAISQQGAPSSPPLPSLSALEATRSA
PLPLPRMGGFPPPGSAGASGRDSGSEGLPSVPPAAAAGPAAGLSAPYAAV
SVTLRSLDDFSAGSLVGGGGLGSAVAGAAAVVGGAAADRARGVEFTSLPL
SAGAAPPPGAESAHRQPNLVGTVSMTPAAGAAKAA
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mRNA from alignment at L-elsbetiae_contig6621:1712..2266+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6621.15345.1 ID=mRNA_L-elsbetiae_contig6621.15345.1|Name=mRNA_L-elsbetiae_contig6621.15345.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=555bp|location=Sequence derived from alignment at L-elsbetiae_contig6621:1712..2266+ (Laminarionema elsbetiae ELsaHSoW15)
ATCTGGTCCCTGTGTGACCCCGCTCTGACCGGGTCCATTCGCCAGCCGGG
GTTCTTCGCCGCGATGCGACTGATAGCCATCTCTCAACAGGGGGCTCCGT
CTTCGCCTCCCCTTCCTTCGCTCTCTGCACTGGAGGCAACGAGATCCGCG
CCGCTGCCTCTGCCACGGATGGGAGGATTTCCACCGCCTGGCTCCGCCGG
TGCTAGCGGCCGTGATAGCGGGAGCGAAGGGTTGCCCTCGGTGCCCCCCG
CCGCCGCGGCCGGCCCCGCTGCCGGTCTTTCGGCACCCTACGCCGCGGTT
TCCGTGACCCTTCGTTCGCTTGATGATTTCTCAGCAGGGTCCCTTGTCGG
CGGAGGAGGGCTAGGCAGTGCCGTTGCCGGTGCTGCAGCGGTGGTGGGAG
GTGCCGCCGCGGACAGGGCTCGGGGCGTTGAATTTACGTCGTTGCCGTTG
TCGGCCGGGGCTGCGCCGCCACCGGGGGCAGAGAGCGCGCACCGGCAGCC
TAACCTTGTTGGGACAGTGTCTATGACACCAGCAGCGGGAGCGGCGAAAG
CAGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6621:1712..2266+

>mRNA_L-elsbetiae_contig6621.15345.1 ID=mRNA_L-elsbetiae_contig6621.15345.1|Name=mRNA_L-elsbetiae_contig6621.15345.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig6621:1712..2266+ (Laminarionema elsbetiae ELsaHSoW15)
ATCTGGTCCCTGTGTGACCCCGCTCTGACCGGGTCCATTCGCCAGCCGGG
GTTCTTCGCCGCGATGCGACTGATAGCCATCTCTCAACAGGGGGCTCCGT
CTTCGCCTCCCCTTCCTTCGCTCTCTGCACTGGAGGCAACGAGATCCGCG
CCGCTGCCTCTGCCACGGATGGGAGGATTTCCACCGCCTGGCTCCGCCGG
TGCTAGCGGCCGTGATAGCGGGAGCGAAGGGTTGCCCTCGGTGCCCCCCG
CCGCCGCGGCCGGCCCCGCTGCCGGTCTTTCGGCACCCTACGCCGCGGTT
TCCGTGACCCTTCGTTCGCTTGATGATTTCTCAGCAGGGTCCCTTGTCGG
CGGAGGAGGGCTAGGCAGTGCCGTTGCCGGTGCTGCAGCGGTGGTGGGAG
GTGCCGCCGCGGACAGGGCTCGGGGCGTTGAATTTACGTCGTTGCCGTTG
TCGGCCGGGGCTGCGCCGCCACCGGGGGCAGAGAGCGCGCACCGGCAGCC
TAACCTTGTTGGGACAGTGTCTATGACACCAGCAGCGGGAGCGGCGAAAG
CAGCAATCTGGTCCCTGTGTGACCCCGCTCTGACCGGGTCCATTCGCCAG
CCGGGGTTCTTCGCCGCGATGCGACTGATAGCCATCTCTCAACAGGGGGC
TCCGTCTTCGCCTCCCCTTCCTTCGCTCTCTGCACTGGAGGCAACGAGAT
CCGCGCCGCTGCCTCTGCCACGGATGGGAGGATTTCCACCGCCTGGCTCC
GCCGGTGCTAGCGGCCGTGATAGCGGGAGCGAAGGGTTGCCCTCGGTGCC
CCCCGCCGCCGCGGCCGGCCCCGCTGCCGGTCTTTCGGCACCCTACGCCG
CGGTTTCCGTGACCCTTCGTTCGCTTGATGATTTCTCAGCAGGGTCCCTT
GTCGGCGGAGGAGGGCTAGGCAGTGCCGTTGCCGGTGCTGCAGCGGTGGT
GGGAGGTGCCGCCGCGGACAGGGCTCGGGGCGTTGAATTTACGTCGTTGC
CGTTGTCGGCCGGGGCTGCGCCGCCACCGGGGGCAGAGAGCGCGCACCGG
CAGCCTAACCTTGTTGGGACAGTGTCTATGACACCAGCAGCGGGAGCGGC
GAAAGCAGCA
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