mRNA_L-elsbetiae_contig662.15342.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig662.15342.1
Unique NamemRNA_L-elsbetiae_contig662.15342.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig662.15342.1 vs. uniprot
Match: D7FZZ9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ9_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.950e-15
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 2 
Query:   26 GPQLQAPALKSCVIVALHLGNNAIGDKGIAALADGLRHARGLQKL 160
            G Q  APALK CVIVALHLGNNA+GDKG+ +LADGLRHARGLQKL
Sbjct:  288 GAQQLAPALKDCVIVALHLGNNALGDKGLCSLADGLRHARGLQKL 332
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig662.15342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZZ9_ECTSI4.950e-1582.22Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig662contigL-elsbetiae_contig662:28829..29336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.8503652-CDS-L-elsbetiae_contig662:28828..290061622816732.8503652-CDS-L-elsbetiae_contig662:28828..29006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig662 28829..29006 +
1691683772.8426743-CDS-L-elsbetiae_contig662:28828..290061691683772.8426743-CDS-L-elsbetiae_contig662:28828..29006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig662 28829..29006 +
1622816732.8633375-CDS-L-elsbetiae_contig662:29260..293341622816732.8633375-CDS-L-elsbetiae_contig662:29260..29334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig662 29261..29334 +
1691683772.8568082-CDS-L-elsbetiae_contig662:29260..293341691683772.8568082-CDS-L-elsbetiae_contig662:29260..29334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig662 29261..29334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig662.15342.1prot_L-elsbetiae_contig662.15342.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig662 28829..29334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig662.15342.1

>prot_L-elsbetiae_contig662.15342.1 ID=prot_L-elsbetiae_contig662.15342.1|Name=mRNA_L-elsbetiae_contig662.15342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
VCLRALLLRPPTAGTRPQELRDRGLAPGEQRHRGQGHRRSSGWPEARPRA
AEAAPQRQRDNRRRVPPAGQLAGPPESPLHPGPL
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mRNA from alignment at L-elsbetiae_contig662:28829..29336+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig662.15342.1 ID=mRNA_L-elsbetiae_contig662.15342.1|Name=mRNA_L-elsbetiae_contig662.15342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=508bp|location=Sequence derived from alignment at L-elsbetiae_contig662:28829..29336+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTGTCTTCGTGCTCTCCTGCTTCGGCCCCCAACTGCAGGCACCCGCCC
TCAAGAGCTGCGTGATCGTGGCCTTGCACCTGGGGAACAACGCCATAGGG
GACAAGGGCATCGCCGCTCTAGCGGATGGCCTGAGGCACGCCCGAGGGCT
GCAGAAGCTGCACCTCAACGACAACGAGGCAAGAAGGCCGGTCGACCAAT
GTGGAACTCCGCACACGTCAACTCTCTTGTTGCTGTCGCCTGCGCCTCCA
GCTTCGTGGGGGCTGATCCAGTATGTGTACCCGCGGTTGGTTCGACTGTT
CTGCACGAACCAGTAGAACAAAGCCTGGCGCGGTTTTGCAGATCTGTCCG
CTCATACAAACGCAGTGATGCCACCGCAGCACGGCAATCGCGCGATTCCC
CCACTCGGTCACCCTCTCCAAACTCCTCGCAGATAACAGACGTAGGGTGC
CACCGGCTGGCCAACTCGCTGGGCCCCCTGAAAGTCCTCTCCACCCTGGA
CCTCTGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig662:28829..29336+

>mRNA_L-elsbetiae_contig662.15342.1 ID=mRNA_L-elsbetiae_contig662.15342.1|Name=mRNA_L-elsbetiae_contig662.15342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig662:28829..29336+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTGTCTTCGTGCTCTCCTGCTTCGGCCCCCAACTGCAGGCACCCGCCC
TCAAGAGCTGCGTGATCGTGGCCTTGCACCTGGGGAACAACGCCATAGGG
GACAAGGGCATCGCCGCTCTAGCGGATGGCCTGAGGCACGCCCGAGGGCT
GCAGAAGCTGCACCTCAACGACAACGAGGTCTGTCTTCGTGCTCTCCTGC
TTCGGCCCCCAACTGCAGGCACCCGCCCTCAAGAGCTGCGTGATCGTGGC
CTTGCACCTGGGGAACAACGCCATAGGGGACAAGGGCATCGCCGCTCTAG
CGGATGGCCTGAGGCACGCCCGAGGGCTGCAGAAGCTGCACCTCAACGAC
AACGAGATAACAGACGTAGGGTGCCACCGGCTGGCCAACTCGCTGGGCCC
CCTGAAAGTCCTCTCCACCCTGGACCTCTGATAACAGACGTAGGGTGCCA
CCGGCTGGCCAACTCGCTGGGCCCCCTGAAAGTCCTCTCCACCCTGGACC
TCTG
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