mRNA_L-elsbetiae_contig6614.15338.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6614.15338.1
Unique NamemRNA_L-elsbetiae_contig6614.15338.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6614.15338.1 vs. uniprot
Match: D7FYK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYK2_ECTSI)

HSP 1 Score: 397 bits (1019), Expect = 1.850e-139
Identity = 193/207 (93.24%), Postives = 200/207 (96.62%), Query Frame = 1 
Query:    1 MLKSALRALVDKYRLTMVCTPNQSVILRDISPEQREGVEAILSSYGVKPIEQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLGDEEIMVRMTGCPNGCARPYMAELAFVGDGPDSYQVWLGGSPGNTRTAYIYTDRMKDATMEASIEPILRAYKATRQNAPGTSFPEAFGDWCHRLEKGGVQSAADKVAKAAA 621
            MLKSALRALVDKYRLTMVCTPNQSVILRDISPEQREGVEAIL+SYGVKPIEQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLGDEE+MVRMTGCPNGCARPYMAELAFVGDGPDSYQVWLGGSPGNTRTAYIYT+RMKD  ME ++EPIL AYKATRQNAPG S+PEAFGDWCHRLEKGGV+SA  KVAKAAA
Sbjct:    1 MLKSALRALVDKYRLTMVCTPNQSVILRDISPEQREGVEAILNSYGVKPIEQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLGDEEVMVRMTGCPNGCARPYMAELAFVGDGPDSYQVWLGGSPGNTRTAYIYTNRMKDPAMEDTVEPILTAYKATRQNAPGKSYPEAFGDWCHRLEKGGVESATAKVAKAAA 207
[Close]
BLAST of mRNA_L-elsbetiae_contig6614.15338.1 vs. uniprot
Match: A0A835Z7S6_9STRA (Assimilatory sulfite reductase (ferredoxin) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S6_9STRA)

HSP 1 Score: 273 bits (698), Expect = 3.740e-85
Identity = 126/201 (62.69%), Postives = 160/201 (79.60%), Query Frame = 1 
Query:    4 LKSALRALVDKYRLTMVCTPNQSVILRDISPEQREGVEAILSSYGVKPIEQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLGDEEIMVRMTGCPNGCARPYMAELAFVGDGPDSYQVWLGGSPGNTRTAYIYTDRMKDATMEASIEPILRAYKATRQNAPGTSFPEAFGDWCHRLEKGGVQSAADKV 606
            +K+ALRA+ D++   M+CTPNQS+ILRD++  QR  +EA+L+++G+ PIE IDPLTRL++ACPALPMCGLAITEAERRMP ++ R+RA+LD  GLGDEEIM+RMTGCPNGCARPYMAELAFVGDGPD+YQVWLGG+P   R  Y     MK+  +EA++ P+L AYKA RQ   G   PE+FG++C RL K GV++A   V
Sbjct:  439 IKTALRAIADRFAFPMICTPNQSLILRDVAEAQRAPLEALLAAHGILPIEAIDPLTRLAIACPALPMCGLAITEAERRMPEFITRVRALLDAGGLGDEEIMMRMTGCPNGCARPYMAELAFVGDGPDTYQVWLGGTPQCDRVGYPLMKGMKEKDLEATLRPLLAAYKAGRQTRAGARGPESFGEYCSRLGKAGVEAAVAAV 639
[Close]
BLAST of mRNA_L-elsbetiae_contig6614.15338.1 vs. uniprot
Match: A0A7S1GPP5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GPP5_CYCTE)

HSP 1 Score: 251 bits (641), Expect = 2.730e-81
Identity = 116/189 (61.38%), Postives = 152/189 (80.42%), Query Frame = 1 
Query:    4 LKSALRALVDKYRLTMVCTPNQSVILRDISPEQREGVEAILSSYGVKPIEQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLGDEEIMVRMTGCPNGCARPYMAELAFVGDGPDSYQVWLGGSPGNTRTAYIYTDRMKDATMEASIEPILRAYKATRQNAPGTSFPEAFGDWCHRL 570
            LK+ALR +VD Y L MV +P QS+I+RDI P+ ++ +E IL+ +G+KPIE++DPL RL+MACPALP+CGLA TEAER+MP Y+ ++R++L+K+ L DEEI++RMTGCPNGCARPYMAELAFVGDGP SYQVWLGGSP  TRTA+ +  +MK+  +EA++EPIL  +   RQN       EAFGD+CHR+
Sbjct:   47 LKTALRVIVDTYNLPMVMSPTQSIIIRDIDPKDKDDIEKILADHGLKPIEEVDPLNRLAMACPALPLCGLAQTEAERKMPDYLAQMRSLLNKMNLSDEEILMRMTGCPNGCARPYMAELAFVGDGPKSYQVWLGGSPVLTRTAFPFKAKMKNTDLEATVEPILAMFIQQRQNF------EAFGDFCHRV 229
[Close]
BLAST of mRNA_L-elsbetiae_contig6614.15338.1 vs. uniprot
Match: A0A6T8GFQ6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8GFQ6_9STRA)

HSP 1 Score: 251 bits (641), Expect = 3.900e-80
Identity = 118/189 (62.43%), Postives = 151/189 (79.89%), Query Frame = 1 
Query:    4 LKSALRALVDKYRLTMVCTPNQSVILRDISPEQREGVEAILSSYGVKPIEQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLGDEEIMVRMTGCPNGCARPYMAELAFVGDGPDSYQVWLGGSPGNTRTAYIYTDRMKDATMEASIEPILRAYKATRQNAPGTSFPEAFGDWCHRL 570
            LKSALRA+ DKY L M+ +P+QS++ RD++PE +EG   IL  +G++ IE IDPL RL++ACPALP+CGLA TEAERRMPSY+ERIR++L+ + +G+EEIM+RMTGCPNGCARPYMAELAFVGDG +SYQ+WLGGSP  TRTA+ Y  RMKD  +EA++EPIL  +   R+        EAFGD+CHR+
Sbjct:  133 LKSALRAIADKYHLAMIMSPSQSIMFRDVNPEDKEGFMQILVEHGIEAIEDIDPLNRLAIACPALPLCGLAQTEAERRMPSYIERIRSVLEMMNIGNEEIMMRMTGCPNGCARPYMAELAFVGDGLNSYQIWLGGSPVLTRTAFPYVARMKDKNLEATMEPILAHFITERKEF------EAFGDFCHRV 315
[Close]
BLAST of mRNA_L-elsbetiae_contig6614.15338.1 vs. uniprot
Match: A0A835ZIU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIU7_9STRA)

HSP 1 Score: 257 bits (656), Expect = 2.950e-79
Identity = 123/197 (62.44%), Postives = 148/197 (75.13%), Query Frame = 1 
Query:    4 LKSALRALVDKYRLTMVCTPNQSVILRDISPEQREGVEAILSSYGVKPIEQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLGDEEIMVRMTGCPNGCARPYMAELAFVGDGPDSYQVWLGGSPGNTRTAYIYTDRMKDATMEASIEPILRAYKATRQNAPGTSFPEAFGDWCHRLEKGGVQSA 594
            +K+ALR +VD +  TM+CTPNQS+ILRD+  +QR  VEA L  +GV PIEQIDPLTRLSMAC ALP CGLAITEAERRMPS + RIRA+LD   LG EEIMVR TGCPNGCARPYMAELAFVGDGPD+YQ+W+GG P   R  +   +R+K    E  + P LRAY+  R   PG   PE+FG++C RL K G+++A
Sbjct:  400 IKTALREIVDTFGFTMICTPNQSLILRDVDAQQRSAVEAALRRHGVLPIEQIDPLTRLSMACVALPTCGLAITEAERRMPSVIARIRALLDAESLGAEEIMVRATGCPNGCARPYMAELAFVGDGPDTYQLWVGGVPSCDRVGFPVVERVKFEGFEDVLRPFLRAYREQRITVPGARGPESFGEYCSRLGKAGLEAA 596
[Close]
BLAST of mRNA_L-elsbetiae_contig6614.15338.1 vs. uniprot
Match: A0A448ZQU8_9STRA (Assimilatory sulfite reductase (ferredoxin) n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQU8_9STRA)

HSP 1 Score: 258 bits (658), Expect = 3.090e-79
Identity = 122/206 (59.22%), Postives = 157/206 (76.21%), Query Frame = 1 
Query:    4 LKSALRALVDKYRLTMVCTPNQSVILRDISPEQREGVEAILSSYGVKPIEQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLGDEEIMVRMTGCPNGCARPYMAELAFVGDGPDSYQVWLGGSPGNTRTAYIYTDRMKDATMEASIEPILRAYKATRQNAPGTSFPEAFGDWCHRLEKGGVQSAADKVAKAAA 621
            LKS +RA+VDKY L M+ +P QS+I +DI PE + G EAIL+ +G+KP+E+IDPL RLSMACPALP+CGLA TEAER MPSY+ERIRA+L K+G+ DEEI++RMTGCPNGCARPYMAE+AFVGDGP SYQ+WLGGSP  TRTA+ +  ++K+  +E  +EPIL  +K  RQ        EAFGD+CHR+    ++  ++     AA
Sbjct:  438 LKSCMRAIVDKYNLPMIMSPTQSIIFKDIKPEDKAGFEAILAEHGIKPLEEIDPLARLSMACPALPLCGLAQTEAERIMPSYIERIRAVLGKLGIDDEEILMRMTGCPNGCARPYMAEMAFVGDGPKSYQIWLGGSPVLTRTAWPFKAKVKNDDLEVIVEPILAMFKEQRQEF------EAFGDFCHRVGADAIEKFSETYEPIAA 637
[Close]
BLAST of mRNA_L-elsbetiae_contig6614.15338.1 vs. uniprot
Match: A0A1Z5JYL9_FISSO (Assimilatory sulfite reductase (ferredoxin) n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JYL9_FISSO)

HSP 1 Score: 257 bits (656), Expect = 4.310e-79
Identity = 122/196 (62.24%), Postives = 153/196 (78.06%), Query Frame = 1 
Query:    4 LKSALRALVDKYRLTMVCTPNQSVILRDISPEQREGVEAILSSYGVKPIEQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLGDEEIMVRMTGCPNGCARPYMAELAFVGDGPDSYQVWLGGSPGNTRTAYIYTDRMKDATMEASIEPILRAYKATRQNAPGTSFPEAFGDWCHRLEKGGVQS 591
            LKSALRA+VDKY L MV +P QS++L+DI P  + G+EAI + +G+KP+EQ+DPL RL+MACPALP+CGLA TEAER MPSY+ERIRA+L K+ L  EEI++RMTGCPNGCARPYMAELAFVGDGP SYQVWLGGSP  TRTAY +  +M    +E +IEPIL+ +K  R+        EAFGD+CHR+    +++
Sbjct:  429 LKSALRAIVDKYNLHMVMSPTQSIVLKDIDPADKAGIEAIFAQHGIKPLEQVDPLNRLAMACPALPLCGLAQTEAERLMPSYLERIRAVLTKLDLDQEEILIRMTGCPNGCARPYMAELAFVGDGPQSYQVWLGGSPVLTRTAYPFLAKMDVNELEKTIEPILKMWKTQREPF------EAFGDFCHRVGSSAIEA 618
[Close]
BLAST of mRNA_L-elsbetiae_contig6614.15338.1 vs. uniprot
Match: A0A7S4RLB8_9STRA (Assimilatory sulfite reductase (ferredoxin) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RLB8_9STRA)

HSP 1 Score: 256 bits (653), Expect = 1.630e-78
Identity = 115/189 (60.85%), Postives = 152/189 (80.42%), Query Frame = 1 
Query:    4 LKSALRALVDKYRLTMVCTPNQSVILRDISPEQREGVEAILSSYGVKPIEQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLGDEEIMVRMTGCPNGCARPYMAELAFVGDGPDSYQVWLGGSPGNTRTAYIYTDRMKDATMEASIEPILRAYKATRQNAPGTSFPEAFGDWCHRL 570
            LK+ALR LVD+Y L+M+ +P QS+I RD+ P+ +EG+E +L  +G+KP+E++DPL+RLSMACPALP+CGLA TEAER MPSY+ER+R++L+K+ +G+EEI++RMTGCPNGCARPYMAE+AFVGDGP SYQ+WLGGSP  TRTAY Y  +M +  +E ++EPI   Y   RQ        EAFGD+CHR+
Sbjct:  434 LKTALRVLVDRYNLSMILSPTQSLIFRDVDPKDKEGIETVLREHGIKPVEEVDPLSRLSMACPALPLCGLAQTEAERIMPSYIERVRSVLEKMNIGEEEILMRMTGCPNGCARPYMAEIAFVGDGPKSYQLWLGGSPVLTRTAYPYMAKMNNDDLEVTLEPIFAMYIQQRQQF------EAFGDFCHRV 616
[Close]
BLAST of mRNA_L-elsbetiae_contig6614.15338.1 vs. uniprot
Match: A0A7R9WY28_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WY28_9STRA)

HSP 1 Score: 251 bits (640), Expect = 1.660e-78
Identity = 119/205 (58.05%), Postives = 154/205 (75.12%), Query Frame = 1 
Query:    4 LKSALRALVDKYRLTMVCTPNQSVILRDISPEQREGVEAILSSYGVKPIEQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLGDEEIMVRMTGCPNGCARPYMAELAFVGDGPDSYQVWLGGSPGNTRTAYIYTDRMKDATMEASIEPILRAYKATRQNAPGTSFPEAFGDWCHRLEKGGVQSAADKVAKAA 618
            LKSALR LVDKY ++M+ +P QS+I RDI P+ +E +EAIL+ +G++PIE +DPL RL+MACPALP+CGLA TEAER +P+Y++RIR ++DK G+ DEEIM+RMTGCPNGCARPYMAE+A VGDGP +YQVWLGGSP  TRTAY Y  +MK   +EA++EP+   Y   R         EAFGD+C+R     +Q  ++  A AA
Sbjct:  254 LKSALRVLVDKYNISMILSPTQSLIFRDIDPKDKEDIEAILAEHGIQPIENVDPLNRLAMACPALPLCGLAQTEAERVLPNYLQRIRNVMDKTGISDEEIMIRMTGCPNGCARPYMAEIALVGDGPKNYQVWLGGSPVLTRTAYPYLAKMKADDLEATLEPVFVMYAKERHEF------EAFGDFCNRAGLEAIQKFSESYAVAA 452
[Close]
BLAST of mRNA_L-elsbetiae_contig6614.15338.1 vs. uniprot
Match: A0A1E7F3M1_9STRA (Assimilatory sulfite reductase (ferredoxin) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3M1_9STRA)

HSP 1 Score: 254 bits (649), Expect = 2.640e-78
Identity = 120/189 (63.49%), Postives = 150/189 (79.37%), Query Frame = 1 
Query:    4 LKSALRALVDKYRLTMVCTPNQSVILRDISPEQREGVEAILSSYGVKPIEQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLGDEEIMVRMTGCPNGCARPYMAELAFVGDGPDSYQVWLGGSPGNTRTAYIYTDRMKDATMEASIEPILRAYKATRQNAPGTSFPEAFGDWCHRL 570
            LKSA+RA+VDKY L M+ +P QS+I +DI PE + G E ILS +G+K +E+IDPL RL+MACPALP+CGLA TEAER MPSY+ER+RA+++KVG+ DEEI++RMTGCPNGCARPYMAELAFVGDGP SYQVWLGGSP  TRTA+ +  RM    +E ++EPIL  ++  RQ        EAFGD+CHR+
Sbjct:  399 LKSAMRAIVDKYNLPMIMSPTQSIIFKDIKPEDKAGFETILSEHGIKKLEEIDPLARLAMACPALPLCGLAQTEAERIMPSYIERMRAVMNKVGVDDEEILIRMTGCPNGCARPYMAELAFVGDGPKSYQVWLGGSPVLTRTAWPFKARMNTNDLEITMEPILTMFRDQRQEF------EAFGDFCHRV 581
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6614.15338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYK2_ECTSI1.850e-13993.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z7S6_9STRA3.740e-8562.69Assimilatory sulfite reductase (ferredoxin) n=1 Ta... [more]
A0A7S1GPP5_CYCTE2.730e-8161.38Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A6T8GFQ6_9STRA3.900e-8062.43Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A835ZIU7_9STRA2.950e-7962.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A448ZQU8_9STRA3.090e-7959.22Assimilatory sulfite reductase (ferredoxin) n=1 Ta... [more]
A0A1Z5JYL9_FISSO4.310e-7962.24Assimilatory sulfite reductase (ferredoxin) n=2 Ta... [more]
A0A7S4RLB8_9STRA1.630e-7860.85Assimilatory sulfite reductase (ferredoxin) n=2 Ta... [more]
A0A7R9WY28_9STRA1.660e-7858.05Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A1E7F3M1_9STRA2.640e-7863.49Assimilatory sulfite reductase (ferredoxin) n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6614contigL-elsbetiae_contig6614:6712..9735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score398.3
Seed ortholog evalue2.2e-108
Seed eggNOG ortholog2880.D7FYK2
Preferred nameSIR1
KEGG rclassRC00065
KEGG koko:K00381,ko:K00392,ko:K02981
KEGG ReactionR00858,R00859,R03600
KEGG Pathwayko00920,ko01100,ko01120,ko03010,map00920,map01100,map01120,map03010
KEGG ModuleM00176,M00177
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0000103,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005507,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006082,GO:0006275,GO:0006323,GO:0006355,GO:0006520,GO:0006790,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009266,GO:0009295,GO:0009337,GO:0009403,GO:0009404,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009892,GO:0009941,GO:0009987,GO:0010319,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016002,GO:0016020,GO:0016043,GO:0016053,GO:0016491,GO:0016667,GO:0016673,GO:0017144,GO:0019219,GO:0019222,GO:0019418,GO:0019419,GO:0019424,GO:0019748,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031967,GO:0031975,GO:0032991,GO:0035770,GO:0036385,GO:0036464,GO:0042644,GO:0042646,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045892,GO:0045934,GO:0046394,GO:0046872,GO:0046914,GO:0048046,GO:0048519,GO:0048523,GO:0050311,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0055114,GO:0060255,GO:0065007,GO:0070813,GO:0070814,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:1900160,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.sulfite reductase (ferredoxin) activity
EggNOG OGsCOG0155@1,KOG0560@2759
EC1.8.1.2,1.8.7.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Ec32 ortholog descriptionSulfite reductase
Ec32 orthologEc-02_004330.1
Exons4
Model size624
Cds size624
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6614.15338.1prot_L-elsbetiae_contig6614.15338.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6614 6712..9735 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.4889798-CDS-L-elsbetiae_contig6614:6711..68411622816732.4889798-CDS-L-elsbetiae_contig6614:6711..6841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6614 6712..6841 -
1691683772.5801952-CDS-L-elsbetiae_contig6614:6711..68411691683772.5801952-CDS-L-elsbetiae_contig6614:6711..6841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6614 6712..6841 -
1622816732.5045097-CDS-L-elsbetiae_contig6614:7498..77141622816732.5045097-CDS-L-elsbetiae_contig6614:7498..7714Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6614 7499..7714 -
1691683772.596197-CDS-L-elsbetiae_contig6614:7498..77141691683772.596197-CDS-L-elsbetiae_contig6614:7498..7714Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6614 7499..7714 -
1622816732.5207117-CDS-L-elsbetiae_contig6614:8512..86341622816732.5207117-CDS-L-elsbetiae_contig6614:8512..8634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6614 8513..8634 -
1691683772.6067495-CDS-L-elsbetiae_contig6614:8512..86341691683772.6067495-CDS-L-elsbetiae_contig6614:8512..8634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6614 8513..8634 -
1622816732.5341067-CDS-L-elsbetiae_contig6614:9579..97351622816732.5341067-CDS-L-elsbetiae_contig6614:9579..9735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6614 9580..9735 -
1691683772.6162927-CDS-L-elsbetiae_contig6614:9579..97351691683772.6162927-CDS-L-elsbetiae_contig6614:9579..9735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6614 9580..9735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6614.15338.1

>prot_L-elsbetiae_contig6614.15338.1 ID=prot_L-elsbetiae_contig6614.15338.1|Name=mRNA_L-elsbetiae_contig6614.15338.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=208bp
MLKSALRALVDKYRLTMVCTPNQSVILRDISPEQREGVEAILSSYGVKPI
EQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLGDEE
IMVRMTGCPNGCARPYMAELAFVGDGPDSYQVWLGGSPGNTRTAYIYTDR
MKDATMEASIEPILRAYKATRQNAPGTSFPEAFGDWCHRLEKGGVQSAAD
KVAKAAA*
back to top

mRNA from alignment at L-elsbetiae_contig6614:6712..9735-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6614.15338.1 ID=mRNA_L-elsbetiae_contig6614.15338.1|Name=mRNA_L-elsbetiae_contig6614.15338.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3024bp|location=Sequence derived from alignment at L-elsbetiae_contig6614:6712..9735- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCAAGAGCGCCCTGCGCGCCCTCGTGGACAAGTACCGCCTCACCAT
GGTGTGCACGCCCAACCAGTCGGTGATCCTGAGAGACATCTCGCCGGAGC
AGAGGGAGGGCGTCGAGGCGATCCTCAGCAGCTACGGCGTCAAGCCGATC
GAGCAGGTTAGCGGGGTGAAAAGGAGGCTGGCGGCTGGGGGTGGGTAAGG
AGTCGCCGGTTGTTTTGTGTGGTGTTGTTGCTGGCGCTGTGTGTTCTCCA
TCGTCTCCGTTATCTCGTTCGTCATTCAGCCTTTTGTCGAGTGGGTTGCC
AGTATAGGTATCGACGGTAGTCTACGCAGGTTTTTGGTCGGCGAAAGATA
TGGGATATAAAGTATGGAATCGGGGAATGTTTGGGGGGTCGGTGGTTAGG
GCTGGGGTTAGGGTCACGGAACCCCTACTACTCTATTTCACATATAAACC
AATATTCCCCGTTTTTTCTCGCGAAGGCAGTCGGTAGTCTACGCAGGTTT
TTGGTCGGCGAAACATATGGGATAAAGTATGGAATCGGGGAATGTTTGGG
GGGTCGGTGGTTGGGATTAGGGTAAGGGTTAGGGTTACGGAACCCCTGCT
ACTCTATTTCACACATAAACCAATATTCCCTGTTTTTTCTCCGAAGGTAG
TCCGATATCGACCAGCCAAGTAGTCCCGCTACTGTGTACTCTCTAGCTGA
TCGTCTCGTCGTCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCTCCCCCTCCCTTCTTTGCTTCCTGCCTCCCCCCCTCCCTTTGCC
NNNNNNNNNNTTTCTTCCGCAGGGCGTGCCAGTTTACCCCCCCCAACACT
CCCCCCTCCTTTTTTCCCTTTACTCGGCTGCCCTCCTCCCCCCCCCCCCC
CCCCCCCCCCCCTGTATGCCCTGTCCCAGTCCTTGCCTGTTTTTGCCATG
CAACCCCTGTCACGCTTGCATGGACTCACCACTCCTGTCTTTTTGTATTT
ATGTACATACCTAAGCGTTTTTATTTATCGGTTCGTTATCGTTGATCTCT
TTTCTTGCTTCCGCCGTTTTTTTTTTTCCTTCTGGGCTGGGACGCAAATA
GATCGACCCCCTGACGAGGCTGTCGATGGCGTGCCCGGCGCTGCCCATGT
GCGGCCTGGCCATCACGGAGGCGGAGCGCCGCATGCCGTCGTACGTCGAG
CGCATCCGCGCCATGCTCGACAAGTGAGTCGATTAATTAGTTTCCCGTAC
GCGGGGTGGGGTGGGTTGGTGGTGGTGCCTCTGGGTTTTCTCGCTCTTTG
TGTCTTCTTTGCTGGACAGGCGACCGCGTTCATCGCCGGCGGCCAGGAAG
CGCCATGGCGTTCGTCCGCGCGAGCGGATTGGGTCGAGATATGCAACGTT
TTGTGTGTGTTGGTCTATAGGTGTGTTCATTCGGCCGGTTTCTCGGGGCA
AGGCTGAAGGGACATATATCGATATGTATATCGGCGCAGACTCGTGTGGT
ATCCGATCCTACCGGTTTCTGAGGCTTTGTTTCATTGCTAGGGGGCCATG
TCCGCACTTTTTACCGCGCCTGAATCAGCCCAAAAATGTAGGTGGCGTTT
GTTTTGTTCAACACGAGACGCCCCTCATATTCGCGGGGTTGTTAATATTT
GTCGTTGTTGTTGTCATGTTGTCTTTGTCATTTGTTATATTTTCGTTTTT
TATGTATTAGTTAAGCCGATATTTGGCAAACTTTCAACTTTTTCGTAGAC
TGGACGTAGACTGCCGACACTTGCTTGCATTTCATCAAACTTGGTGCCAT
TGCGGGATGGGCAAAAGGAACACTCAATACAATGAGCAGTACGAGCGTAA
ATAAGGGCCAGCAGAGAGAGCACAACAGCCGTGTAGTTTTGAGTCAGAGC
TGCGGGTTGGCGGTAAGCGCGAGAGAGGGACGCACTGCCTGCCTGTGTGT
GTGACCCACGCTGCTACTTCATAGCGCTGGCAACAACACGAACCCGCCCC
ATTCCAAACGCGTACTCGCAGGGTTGGACTCGGAGACGAGGAGATCATGG
TGCGGATGACCGGCTGCCCCAACGGGTGCGCACGCCCCTACATGGCGGAG
CTGGCTTTCGTTGGAGACGGACCGGACTCGTACCAGGTGTGGCTCGGAGG
CAGCCCCGGCAACACCCGAACGGCTTACATTTACACGGACCGAATGAAGG
ACGCCACCATGGAGGCCTCCATTGAGCCTATCCTGCGGTGAGAAAAGGGC
GGGAGGAGGAGGAGGAGGAGGAAAAGGGGGGGAAGTTTTGAGGCTTACTG
TAACGCGGTTTGGCGTTGCTCCGTCTTGATCTGTTGTTGGGATGGTTGCG
GTGGTTGCGGACGTCAGCGGTCCACCTTCGTTTTGAGGGTGTGGAAGAGT
CTCTACTCGTCCGCTTACTGTTTTTAGGGTAGGGTCTTTACTTCTTCCGG
CTGTGTAATTATCGGGGTTGTCTTCCTCCCCCCTGAAGCAATGGACGGAG
CCCCCTACCGTGGATCTGCGTCAGTTGAGCGCACGGCCCCCAACGGCCAA
TGGTCGGTTGCCGGCTGCGGCTTTTGCCTTGATTTTTCTTGCACGCTCGT
GATCGGTGAGTTTAAAAGAACCGTGGTTGGTCGTTCGGCTGGTAAGTATG
GCTGACTACAGGCAAAGAAAGGCCGGGGGTTTTCAGGTGAGATGGCCGGT
TGTGTGCATGGCCGAGGCTTTGATCGATCAGGCCTGAATGTCCAGCAACA
CACGCCTGTAGCACCAGCGCTGGCTTTGCACGATTTCGTTTATTGCGCCA
CGGCCGCCGCCGCCGCCGCCGCCGCCTTTTCACGATCACCAACCCCTTCC
CCCCCACGTTGCAAATGGCGTTCCTGCCGTACTTCCATCTCCAGCGCGTA
CAAGGCGACACGGCAGAACGCACCCGGGACCAGCTTCCCCGAGGCGTTCG
GCGACTGGTGCCACAGGTTGGAGAAGGGGGGGGTGCAGTCGGCGGCCGAC
AAAGTGGCCAAGGCGGCGGCATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6614:6712..9735-

>mRNA_L-elsbetiae_contig6614.15338.1 ID=mRNA_L-elsbetiae_contig6614.15338.1|Name=mRNA_L-elsbetiae_contig6614.15338.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1248bp|location=Sequence derived from alignment at L-elsbetiae_contig6614:6712..9735- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCAAGAGCGCCCTGCGCGCCCTCGTGGACAAGTACCGCCTCACCAT
GGTGTGCACGCCCAACCAGTCGGTGATCCTGAGAGACATCTCGCCGGAGC
AGAGGGAGGGCGTCGAGGCGATCCTCAGCAGCTACGGCGTCAAGCCGATC
GAGCAGATGCTCAAGAGCGCCCTGCGCGCCCTCGTGGACAAGTACCGCCT
CACCATGGTGTGCACGCCCAACCAGTCGGTGATCCTGAGAGACATCTCGC
CGGAGCAGAGGGAGGGCGTCGAGGCGATCCTCAGCAGCTACGGCGTCAAG
CCGATCGAGCAGATCGACCCCCTGACGAGGCTGTCGATGGCGTGCCCGGC
GCTGCCCATGTGCGGCCTGGCCATCACGGAGGCGGAGCGCCGCATGCCGT
CGTACGTCGAGCGCATCCGCGCCATGCTCGACAAATCGACCCCCTGACGA
GGCTGTCGATGGCGTGCCCGGCGCTGCCCATGTGCGGCCTGGCCATCACG
GAGGCGGAGCGCCGCATGCCGTCGTACGTCGAGCGCATCCGCGCCATGCT
CGACAAGGTTGGACTCGGAGACGAGGAGATCATGGTGCGGATGACCGGCT
GCCCCAACGGGTGCGCACGCCCCTACATGGCGGAGCTGGCTTTCGTTGGA
GACGGACCGGACTCGTACCAGGTGTGGCTCGGAGGCAGCCCCGGCAACAC
CCGAACGGCTTACATTTACACGGACCGAATGAAGGACGCCACCATGGAGG
CCTCCATTGAGCCTATCCTGCGGGTTGGACTCGGAGACGAGGAGATCATG
GTGCGGATGACCGGCTGCCCCAACGGGTGCGCACGCCCCTACATGGCGGA
GCTGGCTTTCGTTGGAGACGGACCGGACTCGTACCAGGTGTGGCTCGGAG
GCAGCCCCGGCAACACCCGAACGGCTTACATTTACACGGACCGAATGAAG
GACGCCACCATGGAGGCCTCCATTGAGCCTATCCTGCGCGCGTACAAGGC
GACACGGCAGAACGCACCCGGGACCAGCTTCCCCGAGGCGTTCGGCGACT
GGTGCCACAGGTTGGAGAAGGGGGGGGTGCAGTCGGCGGCCGACAAAGTG
GCCAAGGCGGCGGCATGACGCGTACAAGGCGACACGGCAGAACGCACCCG
GGACCAGCTTCCCCGAGGCGTTCGGCGACTGGTGCCACAGGTTGGAGAAG
GGGGGGGTGCAGTCGGCGGCCGACAAAGTGGCCAAGGCGGCGGCATGA
back to top