mRNA_L-elsbetiae_contig660.15321.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig660.15321.1
Unique NamemRNA_L-elsbetiae_contig660.15321.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig660.15321.1 vs. uniprot
Match: D8LI57_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI57_ECTSI)

HSP 1 Score: 495 bits (1275), Expect = 7.280e-156
Identity = 243/262 (92.75%), Postives = 249/262 (95.04%), Query Frame = 1
Query:  157 GAPGADPITSPGLEGVFTDSGTMHGLRVRGSSYLRDRRKIFAGPSFGTLIRADLFRVDGNRHHLFRVDHICAHGRMKDRVAFLQSGDNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAKEAEAAGRLSKEDGKFLRLFSRYIALDLEGGLPVNDIRNRRLKLFPKVLEGPWVVRKAVGKPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESEDELPERLIGSARIVRPDLGRAEPLD 942
            GA G DPITSPGLEGVF DSG MHGLRVRGSSYLRDRRKI AGPSFGTL+RADLFRVDG +HHLFRVDHICAHGRMKDRVAF QSG NPPFLFIVNIQMPGDRAHSVVLCWGMRLKEA EA+ AGRLS ED  FLRLF+RYI+LDLEGGLP+NDIRNRRLKLFPKVLEGPWVVRKAVGKPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESEDELPERLIGSARIVRPDLGRAEPLD
Sbjct: 1600 GAQGGDPITSPGLEGVFIDSGHMHGLRVRGSSYLRDRRKISAGPSFGTLVRADLFRVDGAKHHLFRVDHICAHGRMKDRVAFFQSGPNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAMEADKAGRLSPEDSNFLRLFTRYISLDLEGGLPLNDIRNRRLKLFPKVLEGPWVVRKAVGKPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESEDELPERLIGSARIVRPDLGRAEPLD 1861          
BLAST of mRNA_L-elsbetiae_contig660.15321.1 vs. uniprot
Match: A0A6H5JGP3_9PHAE (EDR2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP3_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.570e-55
Identity = 95/110 (86.36%), Postives = 98/110 (89.09%), Query Frame = 1
Query:  574 RYIALDLEGGLPVNDIRNRRLKLFPKVLEGPWVVRKAVGKPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESEDELPERLIGSAR 903
            RYI+LDLEGGLP+NDIRNRRLKLFPKVLEGPWVVRKAVGKPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQ  S     E  +   R
Sbjct:   11 RYISLDLEGGLPLNDIRNRRLKLFPKVLEGPWVVRKAVGKPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQVRSSAPTRETAVWMER 120          
BLAST of mRNA_L-elsbetiae_contig660.15321.1 vs. uniprot
Match: A0A7S2CMY1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMY1_9STRA)

HSP 1 Score: 166 bits (420), Expect = 4.310e-42
Identity = 103/268 (38.43%), Postives = 151/268 (56.34%), Query Frame = 1
Query:  181 TSPGLEGVFTDSGTMHGLRVRGSSYLRDRRKIFAGPSFGTLIRADLFRVDGNRHHLFRVDHICAHGRMKDRVAFLQSGD--NPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAKEAEAAGRLSKEDGKFLRLFSRY---IALDLE---------GGLPVNDIRNRRLKLFPKVLEGPWVVRKAVG-KPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESEDELPERLIGSARIVRPDLGRAEPL 939
            ++P +   ++D  T H L VRG+ YL D+ K+   P+   L+    +RVD +R    R+DHI + GR K  +    S D   PPFL+IVNIQ+PG    S+V+ + +    A++  +A     +  KFL LF +Y   I +  E         G  P+  +RN+R KL P + EGP++V++AVG KP ++G+KLT RYFR   Y E D+ VGSS +A+    L  GY K L +++   L+G SE ELPE+LIG  R  + D+   E L
Sbjct:  219 SNPSIIDDWSDGCTDHSLSVRGAFYLEDKAKV-KSPATCRLLHFANYRVDTDRFPSERIDHIASRGRAKALIDEWVSLDPQRPPFLYIVNIQLPGKPPLSMVMYFLLPTDLAQQDPSA-----DTQKFLDLFQKYYEDIPITTEPPASDTPDAGVYPLEHLRNQRFKLIPAITEGPFLVKQAVGAKPALLGQKLTQRYFRGEHYVETDVHVGSSAIANQVVGLCRGYCKALTVEIGIVLEGRSEAELPEKLIGVGRFKKIDIEAGEDL 480          
BLAST of mRNA_L-elsbetiae_contig660.15321.1 vs. uniprot
Match: C1MLL2_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MLL2_MICPC)

HSP 1 Score: 162 bits (410), Expect = 3.950e-41
Identity = 96/236 (40.68%), Postives = 134/236 (56.78%), Query Frame = 1
Query:  232 LRVRGSSYLRDRRKIFAGPSFGTLIRADLFRVDGNRHHLFRVDHICAHGRMKDRVAFLQSGDNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAKEAEAAGRLSKEDGKFLRLFSRYIALDLEGGLPVNDIRNRRLKLFPKVLEGPWVVRKAVG-KPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESEDELPERLIGSARIVRPDLGRAEP 936
             RVRGS+YL DR+K+ AG  F  L+  D F VD  R     +D+IC+      + + L++     F+F VNIQ+PG R  S+V  + +R    K +               LFSR++  D       +  RN RLKL P V  GPWVV++AVG KP ++G+ L   Y  RP Y EVDID+GSST+A+N      GY + LV+D+ F ++G+S+ ELPERLIG++RI   +   A P
Sbjct:  228 FRVRGSNYLHDRKKVPAGQPFAELVAVDWF-VDYRR-----IDNICSRPSGTCQHSLLKNDYQESFVFAVNIQVPGPRHFSIVYYYRLRAPLDKSS---------------LFSRFVHGD-------DAFRNSRLKLIPSVALGPWVVQRAVGTKPLIVGRALKVVYHSRPNYLEVDIDIGSSTVANNVVRFVLGYVRTLVVDMCFLIEGKSDGELPERLIGTSRIAHLEPDAAVP 435          
BLAST of mRNA_L-elsbetiae_contig660.15321.1 vs. uniprot
Match: A0A7S2WM21_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WM21_9STRA)

HSP 1 Score: 158 bits (400), Expect = 3.460e-40
Identity = 95/274 (34.67%), Postives = 150/274 (54.74%), Query Frame = 1
Query:  172 DPITSPGLEGVFTDSGTMHGLRVRGSSYLRDRRKIFAGPSFGTLIRADLFRVDGNRHHLFRVDHICAHGRMKDRVAFLQSGDNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAKEAEAAGRLSKEDG-KFLRLFSRYIALDL---------------EGGL-PVNDIRNRRLKLFPKVLEGPWVVRKAVG-KPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESEDELPERLIGSARIVRPDLGRAEPL 939
            D    P LEG + DS   H   VRG  Y+ D+ K+ AG +   L+   L+R + +R +  R+DH+ A G+ +  V  L+  +  PFLFI+NIQ+PG    S+V+ + M       A+   R    D  KF  +   Y   DL               E GL P +  RN+R KL P++++GP++VR AVG KP ++G+KLT RY+R   Y E D+ VGS+ +A++ T ++  Y+K++ +++A  ++G  E ELPE+L+G  +    D+   E +
Sbjct:  116 DRFRQPQLEGTWQDSSNTHDFHVRGPFYMSDKLKVHAGTAVCPLVLYQLYRNEPSRLN-DRIDHVAAKGKCRRIVEALRELNPAPFLFILNIQVPGHPPMSMVMIFAM------PADYDRRDCSSDAVKFRNMLQTYYQ-DLPVHDPSNPQSPTEEGEAGLSPSDHFRNQRFKLIPRIVDGPFLVRNAVGAKPALLGQKLTQRYYRGKNYIETDVHVGSNAVANHITGISRTYSKSVTVEIAITIEGRQEAELPEKLVGVVKFTHTDIEVGEDI 381          
BLAST of mRNA_L-elsbetiae_contig660.15321.1 vs. uniprot
Match: A0A7S0GW50_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GW50_MICPS)

HSP 1 Score: 152 bits (385), Expect = 8.260e-37
Identity = 95/240 (39.58%), Postives = 135/240 (56.25%), Query Frame = 1
Query:  232 LRVRGSSYLRDRRKIFAGPSFGTLIRADLFRVDGNRHHLFRVDHICAH--GRMKDRVAFLQSGDNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAKEAEAAGRLSKEDGKFLRLFSRYIALDLEGGLPVNDIRNRRLKLFPKVLEGPWVVRKAVG-KPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESEDELPERLIGSARI--VRPDLGRAEP 936
             RVR  +YLRDR+K  AG  F  L+  D F VD  R     VD++C+   G  + ++      D   F+F +NIQ+PG R HS+V  +   L E  + E+             +F R++  D E        R+ RLKL P V  GPWVV++AVG KP ++GK L  RY  RP + EVDID+GSS +A+N      GY + LV+D+ F ++G+++ ELPERLIG++R+  + PD   A P
Sbjct:  349 FRVRDVNYLRDRKKRLAGKPFADLVAVDWF-VDYRR-----VDNVCSRPTGTCQKKILSGPQADGR-FVFCINIQVPGARHHSIV--YYFVLNEPLDRES-------------VFGRFVGGDQE-------YRDARLKLIPHVALGPWVVQRAVGTKPLIVGKALKVRYHSRPNFLEVDIDIGSSAVANNVVRFVLGYVRTLVVDMCFLVEGKTDKELPERLIGTSRVAHLEPDTAVAPP 559          
BLAST of mRNA_L-elsbetiae_contig660.15321.1 vs. uniprot
Match: A0A067BR04_SAPPC (EDR2_C domain-containing protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BR04_SAPPC)

HSP 1 Score: 147 bits (371), Expect = 1.120e-36
Identity = 96/253 (37.94%), Postives = 136/253 (53.75%), Query Frame = 1
Query:  187 PGLEGVFTDSGTMHGLRVRGSSYLRDRRKIFAGPSFGTLIRADLFR----VDGNRHHLFRVDHICAHGRMKDRVAFLQSGDNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAKEAEAAGRLSKEDGKFLRLFSRYIALDLEGGLPVNDIRNRRLKLFPKVLEGPWVVRKAVG-KPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESEDELPERLIGSARIVRPDLGRA 930
            P +  +F++  +   L VRG SY  D +K+ AG   GTL+  DL++    + G + H+  +D      R    +A    GD    +FIVN+Q+PG     VV  W +       AEA       D KF  LF+R+ + + E        ++ R KL P +++GPW+++ AV  KP + G KLT RYF    Y EVD+D+GSS +ASN   L  GYA+ LV+DL+  LQG S+ ELPER+ GS R    DL  A
Sbjct:   84 PSMLDLFSEPSSSETL-VRGLSYATDGKKVPAGDCLGTLLHVDLWKATDDMPGRQDHVAELDLR----RPSSLLATANPGDT---IFIVNLQVPGTPFVHVVSYWRL------SAEALA----SDAKFAGLFTRFRSNEPEA----QSFQDARFKLVPTIVDGPWLIKAAVPQKPAITGTKLTQRYFVGSNYVEVDMDIGSSAIASNIVSLCRGYAERLVVDLSLTLQGNSDVELPERIFGSVRFSHLDLTLA 314          
BLAST of mRNA_L-elsbetiae_contig660.15321.1 vs. uniprot
Match: W7U3Y4_9STRA (PX domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3Y4_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.430e-36
Identity = 95/258 (36.82%), Postives = 136/258 (52.71%), Query Frame = 1
Query:  202 VFTDSGTMHGLRVRGSSYLRDRRKIFAGPSFGTLIRADLFRVDGNRHHLFRVDHICAHGRMKDRVAFLQS----GDNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAKEAEAAGRLSKEDGKFLRLFSRYIALDLE-----------GGLPVNDIRNRRLKLFPKVLEGPWVVRKAVG-KPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESED-ELPERLIGSARIVRPDLG 924
             + D G  +  RVRG  YL DR K  AGP  G L+ A +FR+        R DHI + GRM + +  +Q          F F++N Q+PGD   S+V  + +            R   EDG F  LF R++   ++           G   ++D +N+R KL P +++GP +++ AVG KP ++G+KLT RYFR   Y EVD+D+ SS LAS    L  GYAK L +++   LQGE E  ELPE+L+G+  I   D+ 
Sbjct:  565 AYYDPGRGNSFRVRGRRYLHDRLKTPAGPPVGELVIAYVFRISPENPGQ-REDHIASRGRMAEILREMQDMKGRDGKHTFFFLLNFQVPGDPPLSMVTVFAL---------PRDRRPAEDGCFWTLFDRFVDFPMDDIKGEGKSDRGGRYALSDFKNKRFKLIPSIVDGPSMIKWAVGNKPTILGQKLTQRYFRGEDYVEVDVDIASSALASQIVSLCRGYAKYLQVEMGILLQGEDETAELPEKLLGTIGIRNLDIN 812          
BLAST of mRNA_L-elsbetiae_contig660.15321.1 vs. uniprot
Match: A0A835Z1B8_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B8_9STRA)

HSP 1 Score: 154 bits (389), Expect = 2.340e-36
Identity = 101/287 (35.19%), Postives = 150/287 (52.26%), Query Frame = 1
Query:  178 ITSPGLEGVFTDSGTMHGLRVRGSSYLRDRRKIFAGPSFGTLIRADLFRVDGNRHHLFRVDHICAHGRMKDRVAFLQSGDNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAKEAEAAGRLSKEDGKFLRLFSRYIALD------------LEGGLPVNDIRNRRLKLFPKVLEGPWVVRKA---VGKP-------------CVIGKKLTARYFRRPG-----YFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESEDELPERLIGSARIVRPDLGRAEPL 939
            + S  L G F+D    HG ++RG +Y+ D+ K  AG   G L+  DLFR+  +     R+D+I + G  K  +A +        LF+++ Q+PG  A S+V  WG+ L       A+G     D KF  LF+++  L               G +P +D R +R KL P + +GPW+VRK    +G P              ++ +KLT R+F+        Y E+DID+GSST+A N   LA G+AK LV+D+   +QG++E ELPERLIG+ R+   D+   EPL
Sbjct: 1536 LESDALRGTFSDLRANHGFKLRGLTYMDDQIKQPAGEPVGRLLMCDLFRLPDD---CGRLDNIASAGMCKKNIARISRPGEA--LFVLSYQVPGSPALSLVCVWGVPL-------ASG-----DAKFDALFAKFRDLPSAAAAGEGXXXXXXGRVPGDDFRTQRFKLLPSIKDGPWIVRKVCGYMGAPDLWLGDIVVGSGATLLAQKLTCRHFQGTTAAGMPYSELDIDIGSSTVAYNTVSLAIGHAKALVVDMGICIQGDNESELPERLIGTVRLTNLDMSSCEPL 1805          
BLAST of mRNA_L-elsbetiae_contig660.15321.1 vs. uniprot
Match: A0A7R9TR21_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TR21_MICPS)

HSP 1 Score: 147 bits (372), Expect = 3.180e-36
Identity = 96/264 (36.36%), Postives = 135/264 (51.14%), Query Frame = 1
Query:  232 LRVRGSSYLRDRRKIFAGPSFGTLIRADLFRVDGNRHHLFRVDHICAHGRMKDRVAFLQSGDNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAKEAEAAGRLSKEDGKFLRLFSRYIALDLEGGLPVNDIRNRRLKLFPKVLEGPWVVRKAVG-KPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYA----------------------------KNLVLDLAFALQGESEDELPERLIGSARIVRPDLGRAEP 936
             RVRGS+YL DR+K+ AG  F  L+  D F VD  R     +D+IC+      + + L++  +  F+F VNIQ+PG R  S+V  + +R    K +               LFSR++  D       +  RN RLKL P V  GPWVV++AVG KP ++G+ L   Y  RP Y EVDID+GSST+A+N      GY                             + LV+D+ F ++G+S+ ELPERLIG++RI   +   A P
Sbjct:  145 FRVRGSNYLHDRKKVPAGQPFAELVAVDWF-VDYQR-----IDNICSRPSGTCQHSLLKNDYHESFVFAVNIQVPGPRHFSIVYYYRLRAPLDKSS---------------LFSRFVHGD-------DAFRNSRLKLIPSVALGPWVVQRAVGTKPLIVGRALKVVYHSRPNYLEVDIDIGSSTVANNVVRFVLGYCFPTIFISQKKTTSNLSYILICAFLNRYVRTLVVDMCFLIEGKSDGELPERLIGTSRIAHLEPDAAVP 380          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig660.15321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI57_ECTSI7.280e-15692.75CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JGP3_9PHAE1.570e-5586.36EDR2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S2CMY1_9STRA4.310e-4238.43Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
C1MLL2_MICPC3.950e-4140.68Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S2WM21_9STRA3.460e-4034.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0GW50_MICPS8.260e-3739.58Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A067BR04_SAPPC1.120e-3637.94EDR2_C domain-containing protein n=2 Tax=Saprolegn... [more]
W7U3Y4_9STRA1.430e-3636.82PX domain-containing protein n=2 Tax=Monodopsidace... [more]
A0A835Z1B8_9STRA2.340e-3635.19CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
A0A7R9TR21_MICPS3.180e-3636.36Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig660contigL-elsbetiae_contig660:25706..30657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score463.8
Seed ortholog evalue5e-128
Seed eggNOG ortholog2880.D8LI57
Hectar predicted targeting categoryother localisation
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
Ec32 ortholog descriptionCRAL/TRIO, N-terminal domain
Ec32 orthologEc-26_005300.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1464
Cds size729
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig660.15321.1prot_L-elsbetiae_contig660.15321.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig660 26219..29922 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816730.608854-UTR-L-elsbetiae_contig660:25705..262181622816730.608854-UTR-L-elsbetiae_contig660:25705..26218Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig660 25706..26218 -
1691683771.1037605-UTR-L-elsbetiae_contig660:25705..262181691683771.1037605-UTR-L-elsbetiae_contig660:25705..26218Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig660 25706..26218 -
1622816730.7036102-UTR-L-elsbetiae_contig660:29922..299271622816730.7036102-UTR-L-elsbetiae_contig660:29922..29927Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig660 29923..29927 -
1691683771.1969929-UTR-L-elsbetiae_contig660:29922..299271691683771.1969929-UTR-L-elsbetiae_contig660:29922..29927Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig660 29923..29927 -
1622816730.7172775-UTR-L-elsbetiae_contig660:30202..302961622816730.7172775-UTR-L-elsbetiae_contig660:30202..30296Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig660 30203..30296 -
1691683771.2074547-UTR-L-elsbetiae_contig660:30202..302961691683771.2074547-UTR-L-elsbetiae_contig660:30202..30296Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig660 30203..30296 -
1622816730.7273095-UTR-L-elsbetiae_contig660:30534..306571622816730.7273095-UTR-L-elsbetiae_contig660:30534..30657Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig660 30535..30657 -
1691683771.2188618-UTR-L-elsbetiae_contig660:30534..306571691683771.2188618-UTR-L-elsbetiae_contig660:30534..30657Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig660 30535..30657 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816730.6189055-CDS-L-elsbetiae_contig660:26218..263141622816730.6189055-CDS-L-elsbetiae_contig660:26218..26314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig660 26219..26314 -
1691683771.127735-CDS-L-elsbetiae_contig660:26218..263141691683771.127735-CDS-L-elsbetiae_contig660:26218..26314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig660 26219..26314 -
1622816730.6289217-CDS-L-elsbetiae_contig660:26659..267771622816730.6289217-CDS-L-elsbetiae_contig660:26659..26777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig660 26660..26777 -
1691683771.1392379-CDS-L-elsbetiae_contig660:26659..267771691683771.1392379-CDS-L-elsbetiae_contig660:26659..26777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig660 26660..26777 -
1622816730.6389868-CDS-L-elsbetiae_contig660:27611..277731622816730.6389868-CDS-L-elsbetiae_contig660:27611..27773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig660 27612..27773 -
1691683771.1509886-CDS-L-elsbetiae_contig660:27611..277731691683771.1509886-CDS-L-elsbetiae_contig660:27611..27773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig660 27612..27773 -
1622816730.651641-CDS-L-elsbetiae_contig660:28477..286021622816730.651641-CDS-L-elsbetiae_contig660:28477..28602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig660 28478..28602 -
1691683771.1628563-CDS-L-elsbetiae_contig660:28477..286021691683771.1628563-CDS-L-elsbetiae_contig660:28477..28602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig660 28478..28602 -
1622816730.6712675-CDS-L-elsbetiae_contig660:28898..290101622816730.6712675-CDS-L-elsbetiae_contig660:28898..29010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig660 28899..29010 -
1691683771.176679-CDS-L-elsbetiae_contig660:28898..290101691683771.176679-CDS-L-elsbetiae_contig660:28898..29010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig660 28899..29010 -
1622816730.6895547-CDS-L-elsbetiae_contig660:29806..299221622816730.6895547-CDS-L-elsbetiae_contig660:29806..29922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig660 29807..29922 -
1691683771.1858847-CDS-L-elsbetiae_contig660:29806..299221691683771.1858847-CDS-L-elsbetiae_contig660:29806..29922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig660 29807..29922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig660.15321.1

>prot_L-elsbetiae_contig660.15321.1 ID=prot_L-elsbetiae_contig660.15321.1|Name=mRNA_L-elsbetiae_contig660.15321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
MHGLRVRGSSYLRDRRKIFAGPSFGTLIRADLFRVDGNRHHLFRVDHICA
HGRMKDRVAFLQSGDNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAKEAE
AAGRLSKEDGKFLRLFSRYIALDLEGGLPVNDIRNRRLKLFPKVLEGPWV
VRKAVGKPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAK
NLVLDLAFALQGESEDELPERLIGSARIVRPDLGRAEPLDSW*
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mRNA from alignment at L-elsbetiae_contig660:25706..30657-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig660.15321.1 ID=mRNA_L-elsbetiae_contig660.15321.1|Name=mRNA_L-elsbetiae_contig660.15321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4952bp|location=Sequence derived from alignment at L-elsbetiae_contig660:25706..30657- (Laminarionema elsbetiae ELsaHSoW15)
GGCGTGGAGAGGGAAGGGGGCACCGTGGATCGGGCCGGCGCGGGGGGGGC TCCGCCCGCTCGGGGTTCGGGGAGAGGCGCCGCGGCCGGGACAGAGGCGG TGGGCCTTAACGACGCCGCCACGGTAGGAGCGGTTTTGGGTTGGTGCCGG CTTTTCACTTTTGGCGCTCCGTGCTGCATATAGGTTATCTGCTTATGTGC GTATTTCTGTGTGTGCCTTTTTTCGACGCGTTTCCATTAGTCCATCGTCT ACATACATGTGTTGCAGAGATTAGGGTGGTGCTGTCGCTTTGCTTATCGT TGGTTCTTGTGGAATAAATATGCTGCGCGGCCGTTTTTTGTCTCTCTTTA AAACTGTGCAGGGCGCGTCGGTTTTCGCGGTACAAGCACGCAGTGGTGCT CCAGGGGCTGATCCCATCACATCCCCCGGGCTGGAGGGAGTTTTCACCGA CTCAGGTGCTTGTTTTGTTGGCGGCCGGGCGTGGTTTACTTGCTCGCATC AGCAGTGCCCGCGGTTACGCTACTACTACGCGGCGGGTTTTACTGCGTGT GTGCTGGTATGTTTGTTGTTTTGTAACGTTGCGTGAACTCGCGTCCAGCT CCTGGGGCACGTTTCCGGCCTAGATTTCCGGCTGCAATTTAGTCGTTCAT TGATCCCCCCCACCCACCCCCCTCCAAGTATGATACATAGGTGCCTCTAA CCTCAAGCTTTCCTGTGGCGATCGTTACAGGCACAATGCACGGTCTTCGT GTGCGAGGGTCGAGCTACCTCAGAGATCGCCGTAAGATCTTCGCCGGCCC GTCCTTTGGCACTCTTATCCGAGCGGACCTGTTTAGGGTGGACGGGAACC GGTGAGCGCACCAACACCAAGCCAAGGGCCCAGGAGCTACAGAAACGCGA AAACGACTAAATAGTTGATGCGCAAAAGCCAAGCCGCTAAGTACTCTAAT AGGATGGTTTTCGACCTTAGTAGTTTGCACTGCTGTCCTGTCGCGGCCGC GGCGGCAAATACCGTGTGTAGGTGACACAAGACATCGCACACCCTGGGCA TATTTTCAAAGCTCGATCACTCCCCAGCAAGAAGAGGTGCCGGTGCCAAA AAGGGGGGTGGCGCTGGAAGGATCTAGTCGAGGGTTGTTCGAAAATGTGT CGTTTGGCGCTGGTTCTCTCTTCGTTGCGGAGTAATGGAGCTCTGAAATT CGGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTAGTAGCGCGACAG GAGCCGCAACATTATCTTCGCCGTATGGAATGTAACCAGCCAATCGTTTT CAGTTTTCAATTTTCGATCTGCCTTGGGCACTTCGCTCTATATACCCTAT CCATCCGCCGCTGTGTAGCGTGAGTGTCAACGTGACAGACAGCAGTGCGT ACATTTATTACGTGAATTGAGTCATTCATTCTCCCGTTCGCTCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTTTTTTTCCCCTTTTCCTTC TCCCTCCTCCCTCTCCTCCCCCCCCGGCGGACGGTGNNNNNNNNNNCGGG AAAAAAACCAGCGCGTGACTTTTTTTTTTGAATTGGGCCATTTTTTTTCC CCTTCCCCCCCCCCCCCCCCCCCCCCAATTCTAAACTTTTTTTTCAGGCA TCATTTGTTCCGCGTCGACCATATCTGTGCCCACGGGCGGATGAAGGACA GGGTGGCATTCCTTCAGTCGGGGGACAACCCTCCGTTCCTGTTCATAGTC AACATTCAGGTTGGTGGGGTTGTCGCGATTTTGCTGTTGGCGGGGATGTA GCTATATTGCACCGGACTTCCTTGCCCCCGGGTTCCTTTCTTGAGGGCCT CCGGCCCACGCGCGCGTGTGTGTGTTGGTTCTTCCTTCTTGCAAAGTGAT GGCGAAAGCTGGCTCGCTTTTCCAGGCCGCGCTTTGTTTTTGAACCGCTT GTTTTCGCTGTCCGCGCATCGCGTGGCATCGCGCGCTGCTGCTGTTGTTG TTGTTGTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTGCTGCTGCTGCTT CCCAGATGCCGGGTGACAGGGCCCACAGCGTGGTGTTGTGCTGGGGAATG CGGCTGAAGGAGGCCAAGGAGGCCGAGGCGGCTGGAAGGCTGTCCAAAGA GGACGGGAAATTTCTCAGACTTTTCTCCAGGTGGGGGAGGTAGTCGCAGG AAAAGGACGACGACGGCGGAGAAGCGAAAAACAATGAACATCGATTTTGC TCGGCATGTGTATCTTATGTAGCGGGGCGCTCGGCTGGCTGCCGTATCGG CTCCGTGGTACTGTGGGGGCACACTTCTGGTGTGTGAAGTGTACATCCAT ACGGAGTACGTATGTACGTATTGCGCGAGAGCGGGAGGGGAGATGGTGGG GGGCTGTAAGTTGTATGTTCGCGCGGGAGGGAGACAGGGGCTTCTCTCCG TTGTGCTGTGCGCGGAAGATTCGGCGACCCTCTAGGGTTGGTGAGGCTGT CTGCACCGCCGTGCCCGACGAGATACCCCCCACATGGTTCTCGCGAGACC AACTAGTACCCCCCCCCCCTCCTTCCGCACGTCACCCCCAAGGGTCCAGC ACATATGTATATATATGGCCTCACTTGAACCGGCAGAGACCAGCTCCACC TAGGCCGAGTTAAATCGGAACGAATGGTTTATCTTTCGCCTTAGACACTG TTCGACGTGGTGCAACCACGAGAGAGACAGGCAGGGTGCGTGTGTGTGAG AGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAACAAGCACCCGGTGG TTTGAAACTTAATCCAACCATGTGCTTTTTTTTTCTTTTCTTTTTTTCAC GCCGGCGGCGGGCCCTTCCTCCTGTATCTCAAAGGTACATCGCCCTCGAC CTGGAGGGCGGTTTACCGGTGAACGACATAAGGAACCGCCGGCTGAAGCT GTTCCCCAAGGTGCTGGAAGGGCCGTGGGTGGTGCGAAAGGCCGTCGGCA AGCCGTGCGTCATCGGCAAGAAGCTCACCGCCAGATACTTTCGGAGGTGT GTGTAAAGCGATAGCGCGAGCTCGTGGGAACTTCGAAGTATTGTCTTGTA TATTTGTACAAGACGGAGTATTGCCTTACACCCCAAGACCAAGTATTGTC TTACACCCAAGAGAGTGAGTGGCAAACAAAGTGGCGTGGTGTTTCGTGTG TTGGGCGACAGATGTGTTTGTTGGAGCGATCGGTGTCAAAACGACGGCAC GTGCGTATTGGGTGCGCGTGCGTGGCCCGCCTTTTTTGCAGCTCGAGGAA AAGCGTGGTATCACATGTACGTACTATAGAAGCGGAAATTAAACCATTAG ACCAGTCAGTACTGACTGGTCTAATGGTTTAATTTCCGCTTCCTGACTGG TCTATGTAATGGTTTAATTTCTGCTTCTATAGTATCGCCGTGTCATACGT AGCAACGGGAGCTTCGATCGGGATTTGCCGGCGAGCCTTTCTCGGAAACA CGCGAAGGTTTTGTGTCCACGTCTTGCAGCAGCGCAGAGTAAAATAGCGA GGTCCGCTTGGAAACCAGCGGGGCTAAGCTCGTGGCTGCCGTTGAGCAGC CACGCCGCTGAGAGAGAGGCAAGCTTGTGGGTACATAACACTCATGGGCT TGCTCGTGGCTGAATATCGTTCAAAAACAGCCACCAGGACTTTGAGAGAG GCAAAAGCTTGTGGGTAGGGGTAGACTCATGGGCGGCATGGTCTGACACG CCTCTCCCTCCCCTTTCCTTGCCTGCCTCACTACTCGCGACGTGTGCATC ATGCCGCCCGCCTTGTCTCTTCGGCCCCTGGCTCTCTCTCTCTCTCTCTC TCTCTCTCGCCACTCGCCCGCCCGCCCAAGACCTGGGTACTTCGAGGTGG ACATCGACGTGGGGTCGAGCACTCTGGCCAGCAACGCGACTCACCTAGCC GGCGGCTACGCGAAGAACCTCGTGCTTGACCTGGCGTTCGCCTTGCAGGT GCGTTTGTTTCCACGCAAAAGTATGTACCATATCTTACGCACAACTTGTA GAATACATTCCTGTTTTTTTTGTTTTTTTGTGGAGACCGTGCAGGAGAAG AAGCCTCGACGAGCTGGTTTGGCAGCTTTCGGTGGACTTTTTTTGTCACG TAATGTTTTACAAACAGCAGTAGTATTTTTTGTTTTTTGGGTTATTCGGC GGTCAAGCTCATGCTCGCTCTACGCAGCGAAACGCAGCTGTAGTGTTTTC TTGGGCCCCAAGGACTAGCTGCTACTGTGAGAGAGACCGCCTACAAAGCA AGATCGCGCCCGCTTCGCCGCTCGCCTGTCCCATGCAATGCAGGGAGAGT CCGAAGACGAGTTGCCGGAGAGGTTGATCGGAAGCGCGCGCATTGTGCGG CCTGACCTGGGGCGAGCAGAACCTCTCGACAGCTGGTAGACTCGGTGCTT GCCGATGTTTTGATTGTATCCTACCCGCATGTCCCCGTCTGTTGTTTGTA GTGGTCCCTCCGCACAAAGTTCGTTACAGTCGGACTGAGGTGCCCCTGAC TGGGGCACTCCGAGGGATACTTCTTGTCCCAGGAGGTAAACAAGTTTTAT GGGAGTATCTATGTAAAAAATGTGCCTGAACTGCTACTGTCTGTGGGTGT GGGATAACATAGTTTGACTTGGCTTCCTCGCTTTTGATAAGACGAGAACT CTGCTGTTTTTTGAAGTGCGTAAGTTGCCCTTGGAGAATTTCATAGGCCA GTTCGTTTACGCTGAAATAGGGGAGCGTCTGCGGCGGGAGCGCAGCCTCT CAACCGGCAGAACCGCACCTGTCTGTGATTTGCGCTTCGCCTCTCGCAAT GTAAAAGTGGGTATTTTTGTATGTTTGGTTGGAAGCCGGGAGGGTGTTAA GGAAGATTCCTTCATTGGTTGGACATTCGGACAACTTCGACAAAATTAGC AA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig660:25706..30657-

>mRNA_L-elsbetiae_contig660.15321.1 ID=mRNA_L-elsbetiae_contig660.15321.1|Name=mRNA_L-elsbetiae_contig660.15321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig660:25706..30657- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGGTCTTCGTGTGCGAGGGTCGAGCTACCTCAGAGATCGCCGTAA
GATCTTCGCCGGCCCGTCCTTTGGCACTCTTATCCGAGCGGACCTGTTTA
GGGTGGACGGGAACCGATGCACGGTCTTCGTGTGCGAGGGTCGAGCTACC
TCAGAGATCGCCGTAAGATCTTCGCCGGCCCGTCCTTTGGCACTCTTATC
CGAGCGGACCTGTTTAGGGTGGACGGGAACCGGCATCATTTGTTCCGCGT
CGACCATATCTGTGCCCACGGGCGGATGAAGGACAGGGTGGCATTCCTTC
AGTCGGGGGACAACCCTCCGTTCCTGTTCATAGTCAACATTCAGGCATCA
TTTGTTCCGCGTCGACCATATCTGTGCCCACGGGCGGATGAAGGACAGGG
TGGCATTCCTTCAGTCGGGGGACAACCCTCCGTTCCTGTTCATAGTCAAC
ATTCAGATGCCGGGTGACAGGGCCCACAGCGTGGTGTTGTGCTGGGGAAT
GCGGCTGAAGGAGGCCAAGGAGGCCGAGGCGGCTGGAAGGCTGTCCAAAG
AGGACGGGAAATTTCTCAGACTTTTCTCCAGATGCCGGGTGACAGGGCCC
ACAGCGTGGTGTTGTGCTGGGGAATGCGGCTGAAGGAGGCCAAGGAGGCC
GAGGCGGCTGGAAGGCTGTCCAAAGAGGACGGGAAATTTCTCAGACTTTT
CTCCAGGTACATCGCCCTCGACCTGGAGGGCGGTTTACCGGTGAACGACA
TAAGGAACCGCCGGCTGAAGCTGTTCCCCAAGGTGCTGGAAGGGCCGTGG
GTGGTGCGAAAGGCCGTCGGCAAGCCGTGCGTCATCGGCAAGAAGCTCAC
CGCCAGATACTTTCGGAGGTACATCGCCCTCGACCTGGAGGGCGGTTTAC
CGGTGAACGACATAAGGAACCGCCGGCTGAAGCTGTTCCCCAAGGTGCTG
GAAGGGCCGTGGGTGGTGCGAAAGGCCGTCGGCAAGCCGTGCGTCATCGG
CAAGAAGCTCACCGCCAGATACTTTCGGAGACCTGGGTACTTCGAGGTGG
ACATCGACGTGGGGTCGAGCACTCTGGCCAGCAACGCGACTCACCTAGCC
GGCGGCTACGCGAAGAACCTCGTGCTTGACCTGGCGTTCGCCTTGCAGAC
CTGGGTACTTCGAGGTGGACATCGACGTGGGGTCGAGCACTCTGGCCAGC
AACGCGACTCACCTAGCCGGCGGCTACGCGAAGAACCTCGTGCTTGACCT
GGCGTTCGCCTTGCAGGGAGAGTCCGAAGACGAGTTGCCGGAGAGGTTGA
TCGGAAGCGCGCGCATTGTGCGGCCTGACCTGGGGCGAGCAGAACCTCTC
GACAGCTGGTAGGGAGAGTCCGAAGACGAGTTGCCGGAGAGGTTGATCGG
AAGCGCGCGCATTGTGCGGCCTGACCTGGGGCGAGCAGAACCTCTCGACA
GCTGGTAG
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