mRNA_L-elsbetiae_contig660.15319.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig660.15319.1
Unique NamemRNA_L-elsbetiae_contig660.15319.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig660.15319.1 vs. uniprot
Match: D7FMU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMU8_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 3.900e-33
Identity = 66/92 (71.74%), Postives = 78/92 (84.78%), Query Frame = 3 
Query:   78 EPNHGVESDALRPRQFFDGPLLSVKEYRDQPTGEVRFAVFQGDRRMSVAQIMFSLK---RGEDDHAYGHVKSVRVHRDFRGMGLGPLLFKEV 344
            E +   + + + PRQ FDGPLLSVKEYRD+PTG+VR AVFQG RRMSVAQI+FSLK   RGE++HAYGHVKSV+V +DFRG+GLGPLLFKEV
Sbjct:   90 EDSDSDDDETMPPRQLFDGPLLSVKEYRDRPTGDVRLAVFQGGRRMSVAQILFSLKQEGRGENNHAYGHVKSVKVDQDFRGIGLGPLLFKEV 181
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BLAST of mRNA_L-elsbetiae_contig660.15319.1 vs. uniprot
Match: A0A6H5KQC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC1_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 8.810e-32
Identity = 63/84 (75.00%), Postives = 72/84 (85.71%), Query Frame = 3 
Query:  102 DALRPRQFFDGPLLSVKEYRDQPTGEVRFAVFQGDRRMSVAQIMFSLK---RGEDDHAYGHVKSVRVHRDFRGMGLGPLLFKEV 344
            + L PRQ FDGPLLSVKEYRD+PTG+VR AVFQG RR+SVAQI+FSLK   RGE +H YGHVKSV+V +DFRG+GLGPLLFKE 
Sbjct:   97 ETLSPRQLFDGPLLSVKEYRDRPTGDVRLAVFQGGRRVSVAQILFSLKQEWRGESNHTYGHVKSVKVDQDFRGIGLGPLLFKEA 180
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig660.15319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMU8_ECTSI3.900e-3371.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQC1_9PHAE8.810e-3275.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig660contigL-elsbetiae_contig660:303..4199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1878
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig660.15319.1prot_L-elsbetiae_contig660.15319.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig660 1825..4155 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816730.2958198-UTR-L-elsbetiae_contig660:302..18241622816730.2958198-UTR-L-elsbetiae_contig660:302..1824Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig660 303..1824 -
1691683770.8711393-UTR-L-elsbetiae_contig660:302..18241691683770.8711393-UTR-L-elsbetiae_contig660:302..1824Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig660 303..1824 -
1622816730.3329594-UTR-L-elsbetiae_contig660:4155..41991622816730.3329594-UTR-L-elsbetiae_contig660:4155..4199Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig660 4156..4199 -
1691683770.9025712-UTR-L-elsbetiae_contig660:4155..41991691683770.9025712-UTR-L-elsbetiae_contig660:4155..4199Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig660 4156..4199 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816730.308927-CDS-L-elsbetiae_contig660:1824..19961622816730.308927-CDS-L-elsbetiae_contig660:1824..1996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig660 1825..1996 -
1691683770.8817537-CDS-L-elsbetiae_contig660:1824..19961691683770.8817537-CDS-L-elsbetiae_contig660:1824..1996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig660 1825..1996 -
1622816730.3209682-CDS-L-elsbetiae_contig660:4015..41551622816730.3209682-CDS-L-elsbetiae_contig660:4015..4155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig660 4016..4155 -
1691683770.894659-CDS-L-elsbetiae_contig660:4015..41551691683770.894659-CDS-L-elsbetiae_contig660:4015..4155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig660 4016..4155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig660.15319.1

>prot_L-elsbetiae_contig660.15319.1 ID=prot_L-elsbetiae_contig660.15319.1|Name=mRNA_L-elsbetiae_contig660.15319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MSSNGPTSPDVEPNHGVESDALRPRQFFDGPLLSVKEYRDQPTGEVRFAV
FQGDRRMSVAQIMFSLKRGEDDHAYGHVKSVRVHRDFRGMGLGPLLFKEV
FGM*
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mRNA from alignment at L-elsbetiae_contig660:303..4199-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig660.15319.1 ID=mRNA_L-elsbetiae_contig660.15319.1|Name=mRNA_L-elsbetiae_contig660.15319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3897bp|location=Sequence derived from alignment at L-elsbetiae_contig660:303..4199- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGCTGTCCTTGGAATTTTAGCAGCAGACGGGTGTCGCCGATGTCC
TCGAACGGCCCGACGTCGCCCGATGTTGAACCGAACCATGGCGTCGAGAG
CGACGCCTTGCGGCCCCGCCAGTTCTTCGACGGGCCTCTGCTCTCGGTGA
AAGAGTACCGAGACCAGCCAACGGGAGAAGTCAGGTACTAGGCGTGAAAT
GCTGTGCTCCAGGTTTGAGTTCCTTGTCCATTTGGCCCAACATGTGTCCG
TCCGAGAGGCGACGCACACCGTTTTGTGTCCGAGTGACGAGGGTCGGCTG
CCTCCTACGTGCCTGTGCACTTATTTGACACGGTGAAGCCAATCGTTGTC
CAACTTTGTGTTTTTTGTGCTTGAATATCTCATAGGACGACCTCTTCTCC
CCCCCCCCCTTCTGTCCCCGCCCCAAACGCTCTTTGTATCTATACGAGTC
GCCGATGTTGTGCGTTCACGAGTTCGGGTCCGGACTTGTTTGTGAGACAC
GATCCCCCCCCTCCCTAGGCAGCCCCTCTTTCTACCCGCAGAGTATCAGC
GGATTACAGGTAATAAGAAAAAAATGGATAGAAGTCTACATGCGTGTGTT
ACCAAAGGTACAGGTAGCCTTCACGTACATAAAAACACCCCTGGTGCCTG
AATTTTCAGGGGCAACGGCGGGGAACGTGCTGCTTGCTCTTACGTACAAA
TGTAAAAGTCTCCCTTTCAGACGTTGCTCAAGGATGCACACTCCAGAGGG
TGAAGCAAGAGACCAGACCAATCGTCCGATACCTGCATGCTGTTCTGCCC
GACTTGGAAGCCTTTTCGACGATTTCAAATATAGTTGAACACCTGGGGAA
AGAAACAAAAAACGCCGAAAAAATGTTGCGCCGGCTTCCGCGTGTGTGTA
TGGTATGTGTTTTGTTTGTATGTATTCGCCGGAACAATGAACAAAAACAG
CAAGAGAGACCAGCTAGATTACTTGTTGACTGCTTGACCTGCTGTTGACT
GCTGTTCGGGTTGCATAACTCTCTTGTTTGAAGTTTCTGAGGGAAGTGTC
AGCGCGACAACAGCTGCCACACTAAAAGACCAGAACCCGCGTACGTCGTG
CACCTCGGGATAGAGGCGAGAACCACCGACCGTGCGTGTCACGAACGTTA
CAGAAAAGTTGTCCTGCCTTCAGCTGTCTCGAGGTTGTCGAGATAGGCAA
AGAGTTATCGAGTGAGGGGCTGTGCATGCGTGCCATCTCAACTTTACAGG
GAGGGCTGTTTTTTGCCGTGGCCGGCACATCGTTGAAGAAAAAGACGCTG
CAAGTTTGCAGGAAAGAGCTCACTGAGTTTGTCAACAGCAGCTGTTCAAG
CTGTTCAAGCGGAAGGGGGCAGAAAACTCAACAGCCGGGCTGCTCATAAC
GACCACAGCTCCCGTAATGGTATCTAGATGTATGCATGTACACAAGTCAA
AGATGAAAGCGCGATAACCACCGCCAACTCCATGCTGAGGGGCGGCATCA
GTAAGGGGAAATCATGGAGAAGTTACCTGTGTGTTTGCATGCTGAGATCT
GCTGCTGAGGAGGACTTACCGAGGGCCGCAGCAGTACTCGACGGAATGGG
CACCAATCTTGGGAACGGCGGGTCACCCAAGGCAGCTATATGTAGTGGCA
TGAGCTACTGCTGTAGAGCCGCAGTTGAGGAGGTCGGGGTCTGTGACGGC
GAGCGCAGCAGTGGGGGAATATGTTTGGTGTCGGCCCAGATTCCGAGTTC
TTGAGCGAATGCTGCGTTCTTCTGAACATGCCCACACACGCGTCACTTCT
CTCTATGGTGTCCTCTGCTGATATCGCCCTAAGGTGTGGAGAAACTCCTT
GCTTGTACCCTCACCTTTTTGGGGGAGTTTAGTCGGGTAAATCCCTACCT
GTCTGCAGCGTTCCCCGAAGCCGACGGATGCATCAACGAAGTTGGACGAT
CCCAAGGATTATGTCCACACACACAGGAGTTGTGCACCAGGCCGCAAAAA
CGTTGCAATTTGAGAGTTTTCGAGTCCTCAGGGCGATCGCCGAAGTTGGT
GTGTGTGGCGCAGATCGGCCTTCTCCTCCCCGCAATATGTTTGTTCCAAT
GGGCCCAACCACCCACCCCCTGCAAATCCTATCCTTTCTCCATTTCACCC
ACCCTTCCCCCATACACACCCAAACTCCAACAAAAACAAAATGCTTCGTC
CAGGTTTGCTGTTTTTCAGGGCGATCGTAGGATGTCTGTCGCGCAGATAA
TGTTCTCCCTGAAGAGGGGGGAGGACGATCACGCCTACGGCCACGTGAAG
TCAGTCAGGGTGCACCGCGACTTTCGCGGGATGGGCCTGGGGCCGCTGCT
GTTCAAGGAGGTATTTGGAATGTGACAGGCATGACTATTGAATGACAACG
ACTACCAATTTAATGACAACGTCGTTTTGTTGTCGGACGGTGTCGCTTTT
TGCTGTTTGCCTGAAAAACAGCAGGTAGGCTCTTTTGGTTCTGTTTCGCG
CTGATTTTTTTTTTCTTCTAAATCCCGGATTTTGTCGAACAATAGTACGT
CTATCTAAAGCGTTTGGTTCTTCTTTTCTTCTGAAGGCTTCGAAACCATT
CTGATTGTTGTGCAATTGTTTTTTTATTTGTTTTTTTTGTTTTCTGTGGC
GCAAAGATGTTCTTGCTGCTGTTGCTGTGCTTGGTCTTGTTTTCCGACAG
TAACGGCCGCTGTTGTGCGGGGGCACCGGTACATTAATTTGGAACGACTG
GGTGGGGCGGAAGCAAAAAGTGTCAACGGTAGTACAATGGGTGTTTCAGT
GACGAAATGCATAAAGTTTGTGTATGCTATGAACACTAAAAGACCTATCG
CTTACAATCGGGAATAATTTTCGCTTGCCGGTGGCCAGAGAAGAGGCCGC
CACAAAGCAGGTAAGAAAAGGGCGTGGGGTACATAAGACGGGCAATGGAG
CTTCTGTAAACGCGTCAAGAACCCCTACCGGAATGTTGTCGGTGCCGCTA
ATACGCGCAGGACCGGCTTTCCACCTCGTAAGGCATGCGTGCCCATTGGC
CGAACAACTCAAGGCAAGCGGCAACCGAGCACGTTAGATCTCACCCCTCC
CCAGGTGTCCTCTTTTCGTCTTTACCCGTACCGGCATTTAATACGTCCCG
ATTGGTGACCTACCTAGGCAGCCTAATCCCTTCCGCCGGAGCCTTGTTTT
TTTTGCCCCCGGTTTCTAAATCCAGCCAGTTTTTCGAGTGCTGAACTCGC
CAGCTCTCAGCCCTTCCAGCCATTTTGTGCTGTTGTTCTTGTATAGCAGA
GTATTTTCCCTGCACATAGTACTTGAACGATCTGCGTTTGTGTCTCGATG
AGAAGGTTTGCCCACGCGGCCAGATCTAGGCACACAGCAAGCTTGGGGCG
TAACATCGCCGGACTACTCTCGGATCAAGCCTTCCGCGCGTGCGCGTTCC
CCGGAGCGCGGACGGAACGGTCACGTTGGTGGGGGTCCCGTATTTATAGC
GTACATGCACACATATTTTTCTCGGCATCGTGCAACGCCCGCACGCGAGC
GTGTGGAACCGGAGGGAGGGCGGAGGGAGTGTCGTCTACATGCAGCGAAC
AGATGGAATGCAGCGCGTGGTTTTTGTGGTTGGTTGGCTGAGCCAAGCGC
TCATGGAATCGAGTAGAGCCGGGTCGAGTCACAACAGTAGTTCAATAGTA
GCCGATTCTGCGAGTCACATGCCTGAGCGGAGAAAGCGAATAAAAAACAG
CAAGCGTGGGCTGCTGGGGCTAGCTCGCCGCACCGACGCGCGCCACGGGC
GTCGCGTGCCTCTATACGTACATATGTAGGGTTAGGGTAAGGGTTAGGGT
TAGCCCCGCCCGGGCGACTAAAAACTGAAACCCGGCTAGCTTCGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig660:303..4199-

>mRNA_L-elsbetiae_contig660.15319.1 ID=mRNA_L-elsbetiae_contig660.15319.1|Name=mRNA_L-elsbetiae_contig660.15319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig660:303..4199- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCTCGAACGGCCCGACGTCGCCCGATGTTGAACCGAACCATGGCGT
CGAGAGCGACGCCTTGCGGCCCCGCCAGTTCTTCGACGGGCCTCTGCTCT
CGGTGAAAGAGTACCGAGACCAGCCAACGGGAGAAGTCAGATGTCCTCGA
ACGGCCCGACGTCGCCCGATGTTGAACCGAACCATGGCGTCGAGAGCGAC
GCCTTGCGGCCCCGCCAGTTCTTCGACGGGCCTCTGCTCTCGGTGAAAGA
GTACCGAGACCAGCCAACGGGAGAAGTCAGGTTTGCTGTTTTTCAGGGCG
ATCGTAGGATGTCTGTCGCGCAGATAATGTTCTCCCTGAAGAGGGGGGAG
GACGATCACGCCTACGGCCACGTGAAGTCAGTCAGGGTGCACCGCGACTT
TCGCGGGATGGGCCTGGGGCCGCTGCTGTTCAAGGAGGTATTTGGAATGT
GAGTTTGCTGTTTTTCAGGGCGATCGTAGGATGTCTGTCGCGCAGATAAT
GTTCTCCCTGAAGAGGGGGGAGGACGATCACGCCTACGGCCACGTGAAGT
CAGTCAGGGTGCACCGCGACTTTCGCGGGATGGGCCTGGGGCCGCTGCTG
TTCAAGGAGGTATTTGGAATGTGA
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