mRNA_L-elsbetiae_contig6594.15301.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6594.15301.1
Unique NamemRNA_L-elsbetiae_contig6594.15301.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6594.15301.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 9.200e-30
Identity = 73/107 (68.22%), Postives = 80/107 (74.77%), Query Frame = 1
Query:    1 APVEDDGDTQ--TGGLTLDAIDLRIEPGQLVGVVGPVGSSKSSLLMAVLREIAPENLVGMAAATAAAVDDAGAASADESSGEREAERNVSVQGSLAYASQEPWIQSG 315
            A VE+D + +   GGLTLDAIDLRIEPGQLVGVVGPVGSSKSSLLMAVLREIAPE+  G+  A+AA         A    GER +E  VSV GSLAYASQEPWIQSG
Sbjct:  563 AQVEEDNEAEDNAGGLTLDAIDLRIEPGQLVGVVGPVGSSKSSLLMAVLREIAPESAAGVGGASAAE------GGASHGHGERTSELGVSVLGSLAYASQEPWIQSG 663          
BLAST of mRNA_L-elsbetiae_contig6594.15301.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 9.230e-30
Identity = 73/107 (68.22%), Postives = 80/107 (74.77%), Query Frame = 1
Query:    1 APVEDDGDTQT--GGLTLDAIDLRIEPGQLVGVVGPVGSSKSSLLMAVLREIAPENLVGMAAATAAAVDDAGAASADESSGEREAERNVSVQGSLAYASQEPWIQSG 315
            A VE+D + +   GGLTLDAIDLRIEPGQLVGVVGPVGSSKSSLLMAVLREIAPE+  G+  A+AA         A    GER +E  VSV GSLAYASQEPWIQSG
Sbjct:  378 AQVEEDNEAEANAGGLTLDAIDLRIEPGQLVGVVGPVGSSKSSLLMAVLREIAPESAAGVGGASAAE------GGAGHGRGERNSELGVSVLGSLAYASQEPWIQSG 478          
BLAST of mRNA_L-elsbetiae_contig6594.15301.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 4.060e-26
Identity = 71/106 (66.98%), Postives = 74/106 (69.81%), Query Frame = 1
Query:    1 APVEDDG--DTQTGGLTLDAIDLRIEPGQLVGVVGPVGSSKSSLLMAVLREIAPENLVGMAAATAAAVDDAGAASADESSGEREAERNVSVQGSLAYASQEPWIQS 312
            AP E D   +T  GGLTLDAIDLRIEPGQLVGVVGPVGSSKSSLLMA+LREI PE   G   A  AAVD      A    GER  +  VSV GSLAY SQEPWIQS
Sbjct:  394 APGEGDNGAETNAGGLTLDAIDLRIEPGQLVGVVGPVGSSKSSLLMAMLREITPERTSG--GAGTAAVD----GGAGHGHGERNCQPLVSVSGSLAYTSQEPWIQS 493          
BLAST of mRNA_L-elsbetiae_contig6594.15301.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.080e-18
Identity = 59/108 (54.63%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    1 APVEDDGDTQT--GGLTLDAIDLRIEPGQLVGVVGPVGSSKSSLLMAVLREIAPENLVGMAAATAAAVDDAGAASADESSGEREAERNVSVQGSLAYA-SQEPWIQSG 315
            APVE+D + +T  GGLTLDAIDLRIEPGQLVGV+GPVGSSKSSLLMA+LREI PE   G  A TAA                        V G   +   +EPWIQSG
Sbjct:  444 APVEEDNEAETNAGGLTLDAIDLRIEPGQLVGVIGPVGSSKSSLLMAMLREITPERTSG-GAGTAA------------------------VHGGAGHGHGEEPWIQSG 526          
BLAST of mRNA_L-elsbetiae_contig6594.15301.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.010e-15
Identity = 52/99 (52.53%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   16 DGDTQTGGLTLDAIDLRIEPGQLVGVVGPVGSSKSSLLMAVLREIAPENLVGMAAATAAAVDDAGAASADESSGEREAERNVSVQGSLAYASQEPWIQS 312
            + +T+  GLTLDAIDLRIEPGQLVGV+GPVGSSKSSLLMA+LREI PE   G           AG A+ D  +G    E              EPWIQS
Sbjct:  372 EAETKAEGLTLDAIDLRIEPGQLVGVIGPVGSSKSSLLMAILREITPERTSG----------GAGTAAIDGGAGHGHGE--------------EPWIQS 446          
BLAST of mRNA_L-elsbetiae_contig6594.15301.1 vs. uniprot
Match: W5JPP8_ANODA (Canalicular multispecific organic anion transporter 1 n=6 Tax=Nyssorhynchus TaxID=44543 RepID=W5JPP8_ANODA)

HSP 1 Score: 64.7 bits (156), Expect = 6.570e-10
Identity = 37/92 (40.22%), Postives = 49/92 (53.26%), Query Frame = 1
Query:   40 LTLDAIDLRIEPGQLVGVVGPVGSSKSSLLMAVLREIAPENLVGMAAATAAAVDDAGAASADESSGEREAERNVSVQGSLAYASQEPWIQSG 315
            LTLD +DLR++PG LV V+GPVG+ KSSL+ A+L E+  E                                N+SV G ++YASQEPW+ SG
Sbjct:  481 LTLDGVDLRVQPGTLVAVIGPVGAGKSSLIHAILGELPLET------------------------------GNISVNGRVSYASQEPWLFSG 542          
BLAST of mRNA_L-elsbetiae_contig6594.15301.1 vs. uniprot
Match: T1DRB9_ANOAQ (Putative wound healing (Fragment) n=1 Tax=Anopheles aquasalis TaxID=42839 RepID=T1DRB9_ANOAQ)

HSP 1 Score: 61.2 bits (147), Expect = 7.730e-9
Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 1
Query:   40 LTLDAIDLRIEPGQLVGVVGPVGSSKSSLLMAVLREIAPENLVGMAAATAAAVDDAGAASADESSGEREAERNVSVQGSLAYASQEPWIQSG 315
            LTLD +DL ++PG LV V+GPVG+ KSSL+ A+L E+  E+                               N+ V G ++YASQEPW+ SG
Sbjct:  180 LTLDGVDLHVQPGTLVAVIGPVGAGKSSLIHAILGELPLES------------------------------GNIRVNGRVSYASQEPWLFSG 241          
BLAST of mRNA_L-elsbetiae_contig6594.15301.1 vs. uniprot
Match: UPI0018CE441A (probable multidrug resistance-associated protein lethal(2)03659 n=2 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CE441A)

HSP 1 Score: 61.2 bits (147), Expect = 1.080e-8
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   43 TLDAIDLRIEPGQLVGVVGPVGSSKSSLLMAVLREIAPENLVGMAAATAAAVDDAGAASADESSGEREAERNVSVQGSLAYASQEPWIQSG 315
            TLD +DLR++PG LV ++GPVG+ KSSL+ ++L E+ PE+                               ++ V G+ +YASQEPW+ +G
Sbjct:  461 TLDNVDLRVQPGTLVAIIGPVGAGKSSLIQSILGELRPES------------------------------GSIKVNGTFSYASQEPWLFTG 521          
BLAST of mRNA_L-elsbetiae_contig6594.15301.1 vs. uniprot
Match: A0A2H4TES8_BACDO (ATP-binding cassette transporter C subfamily member 6 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A2H4TES8_BACDO)

HSP 1 Score: 60.8 bits (146), Expect = 1.460e-8
Identity = 32/98 (32.65%), Postives = 51/98 (52.04%), Query Frame = 1
Query:   22 DTQTGGLTLDAIDLRIEPGQLVGVVGPVGSSKSSLLMAVLREIAPENLVGMAAATAAAVDDAGAASADESSGEREAERNVSVQGSLAYASQEPWIQSG 315
            D+ +   TLD ++LR++PG L+ ++GPVGS KSSL+ ++L E+ PE+                                + V G+ +YASQEPW+ +G
Sbjct:  170 DSNSSEYTLDDVNLRVQPGTLIAIIGPVGSGKSSLVQSILGELRPES------------------------------GTIKVNGTFSYASQEPWLFTG 237          
BLAST of mRNA_L-elsbetiae_contig6594.15301.1 vs. uniprot
Match: A0A182TNF1_9DIPT (Uncharacterized protein n=2 Tax=gambiae species complex TaxID=44542 RepID=A0A182TNF1_9DIPT)

HSP 1 Score: 60.8 bits (146), Expect = 1.460e-8
Identity = 35/98 (35.71%), Postives = 51/98 (52.04%), Query Frame = 1
Query:   22 DTQTGGLTLDAIDLRIEPGQLVGVVGPVGSSKSSLLMAVLREIAPENLVGMAAATAAAVDDAGAASADESSGEREAERNVSVQGSLAYASQEPWIQSG 315
            D +   LTLD +DL ++PG LV V+GPVG+ KSSL+ A+L E+  E+                               ++ V G+++YASQEPW+ SG
Sbjct:  153 DAKATELTLDGVDLHVQPGTLVAVIGPVGAGKSSLIHAILGELPLES------------------------------GSIKVNGNVSYASQEPWLFSG 220          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6594.15301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSW6_ECTSI9.200e-3068.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDN6_9PHAE9.230e-3068.22ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LSW3_ECTSI4.060e-2666.98Multidrug resistance-associated protein-like prote... [more]
D8LSW4_ECTSI1.080e-1854.63Multidrug resistance-associated protein-like prote... [more]
A0A6H5JDL0_9PHAE1.010e-1552.53ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
W5JPP8_ANODA6.570e-1040.22Canalicular multispecific organic anion transporte... [more]
T1DRB9_ANOAQ7.730e-938.04Putative wound healing (Fragment) n=1 Tax=Anophele... [more]
UPI0018CE441A1.080e-835.16probable multidrug resistance-associated protein l... [more]
A0A2H4TES8_BACDO1.460e-832.65ATP-binding cassette transporter C subfamily membe... [more]
A0A182TNF1_9DIPT1.460e-835.71Uncharacterized protein n=2 Tax=gambiae species co... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6594contigL-elsbetiae_contig6594:3006..4227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue2e-25
Seed eggNOG ortholog2880.D8LSW6
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons3
Model size317
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6594.15301.1prot_L-elsbetiae_contig6594.15301.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6594 3008..4227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816728.6418574-CDS-L-elsbetiae_contig6594:3007..30821622816728.6418574-CDS-L-elsbetiae_contig6594:3007..3082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6594 3008..3082 -
1691683769.9356885-CDS-L-elsbetiae_contig6594:3007..30821691683769.9356885-CDS-L-elsbetiae_contig6594:3007..3082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6594 3008..3082 -
1622816728.653792-CDS-L-elsbetiae_contig6594:3651..38541622816728.653792-CDS-L-elsbetiae_contig6594:3651..3854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6594 3652..3854 -
1691683769.951587-CDS-L-elsbetiae_contig6594:3651..38541691683769.951587-CDS-L-elsbetiae_contig6594:3651..3854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6594 3652..3854 -
1622816728.6680698-CDS-L-elsbetiae_contig6594:4190..42271622816728.6680698-CDS-L-elsbetiae_contig6594:4190..4227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6594 4191..4227 -
1691683769.9622717-CDS-L-elsbetiae_contig6594:4190..42271691683769.9622717-CDS-L-elsbetiae_contig6594:4190..4227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6594 4191..4227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6594.15301.1

>prot_L-elsbetiae_contig6594.15301.1 ID=prot_L-elsbetiae_contig6594.15301.1|Name=mRNA_L-elsbetiae_contig6594.15301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
APVEDDGDTQTGGLTLDAIDLRIEPGQLVGVVGPVGSSKSSLLMAVLREI
APENLVGMAAATAAAVDDAGAASADESSGEREAERNVSVQGSLAYASQEP
WIQSG
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mRNA from alignment at L-elsbetiae_contig6594:3006..4227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6594.15301.1 ID=mRNA_L-elsbetiae_contig6594.15301.1|Name=mRNA_L-elsbetiae_contig6594.15301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1222bp|location=Sequence derived from alignment at L-elsbetiae_contig6594:3006..4227- (Laminarionema elsbetiae ELsaHSoW15)
GCACCGGTAGAAGATGACGGGGATACACAGACGGGAGGTACGAACCTGCG GCCTTTGTGATGCTCCGTCCTCGTATCGCATCGCGTTCGCGGAGCCCTCG CGCCCACGGCTGATCGTGTTCGTGTCGTCTGATTGTTCTGTATATACTAC GGTATCAGCCGGTCGGGCGTGACACTGGACTCCACTGGAACCCTTGCCAC TTACCGCGGTTACAACTTCGTCGTCCGCCTCCCGTCAGTCAGCACTACAC TGCACCACCACAAAGCAACCAACTTGGCATAATGCTTTTGATGCGCACAA ACCTTGAATCAATGTGTCTTGGCTTGTGTATGTTGGCTTTCAATTCGGTC GCACCTCAAACAAAAACAACCAGGTCTGACCCTGGACGCGATCGACCTGA GGATCGAGCCGGGTCAGCTGGTGGGGGTCGTCGGCCCCGTCGGCTCCTCC AAGAGCTCGCTGCTCATGGCTGTGCTCAGGGAGATCGCGCCGGAGAATCT GGTCGGCATGGCCGCGGCCACGGCCGCGGCGGTGGATGATGCGGGGGCGG CAAGCGCAGACGAGAGCTCTGGAGAGGTGCGTATGTACTGCAGCCGTGCA CCCACGTTTTCTGGGAGATGGCGTTGGGACAGGCTAGAGGTGGAAGTGAA CAGGCTGGTTCACCGGTTCACCCGGTTCACCCGGTTCATCCATGTGTTGT GTTCTACTAAATGCGTGCGACGTCCGCTTCGGAGGAGGTGCTCTTAGGAC AGGATGGAGGCGACAGTTTAGCAGGGCGGTTCATCAGGTTCATCAGTGTG TTGGCCTGCGGGGGGGGGCCTGTCGTCTGTAGAGCCAGAACGTGATGAGT GTCGTGTCCGAGCAACGCAGCCTATGTTTTGTGTGACGTGTTGCCATCTT TCTTTTTTCAAGCGTTCTCGGCTGGCTTCGTTTTGGTTCTCTTCCGAAAA GGCGTTTGGCTACGTATTGGACACCTGGATCGATGCGCAAGTCAGATATC CATATTGTATCGGTATCGTCGTTTTCGCCAACCTTTCTCTTTTTTTTCCT CTCCCTTTTTCTCTTTCCCCCTCTTTTTTTCTCGGCCTCTTTTGCGCTTT GTTTTCTTGTGGCGTTTGCTGACCCTGTGTCTCTCTCCCCTGCAGCGAGA GGCGGAGCGTAACGTGTCGGTCCAGGGAAGCCTGGCCTACGCCTCTCAGG AACCATGGATACAGTCGGGAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6594:3006..4227-

>mRNA_L-elsbetiae_contig6594.15301.1 ID=mRNA_L-elsbetiae_contig6594.15301.1|Name=mRNA_L-elsbetiae_contig6594.15301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig6594:3006..4227- (Laminarionema elsbetiae ELsaHSoW15)
GCACCGGTAGAAGATGACGGGGATACACAGACGGGAGGCACCGGTAGAAG
ATGACGGGGATACACAGACGGGAGGTCTGACCCTGGACGCGATCGACCTG
AGGATCGAGCCGGGTCAGCTGGTGGGGGTCGTCGGCCCCGTCGGCTCCTC
CAAGAGCTCGCTGCTCATGGCTGTGCTCAGGGAGATCGCGCCGGAGAATC
TGGTCGGCATGGCCGCGGCCACGGCCGCGGCGGTGGATGATGCGGGGGCG
GCAAGCGCAGACGAGAGCTCTGGAGAGGTCTGACCCTGGACGCGATCGAC
CTGAGGATCGAGCCGGGTCAGCTGGTGGGGGTCGTCGGCCCCGTCGGCTC
CTCCAAGAGCTCGCTGCTCATGGCTGTGCTCAGGGAGATCGCGCCGGAGA
ATCTGGTCGGCATGGCCGCGGCCACGGCCGCGGCGGTGGATGATGCGGGG
GCGGCAAGCGCAGACGAGAGCTCTGGAGAGCGAGAGGCGGAGCGTAACGT
GTCGGTCCAGGGAAGCCTGGCCTACGCCTCTCAGGAACCATGGATACAGT
CGGGACGAGAGGCGGAGCGTAACGTGTCGGTCCAGGGAAGCCTGGCCTAC
GCCTCTCAGGAACCATGGATACAGTCGGGA
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