mRNA_L-elsbetiae_contig6584.15288.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6584.15288.1
Unique NamemRNA_L-elsbetiae_contig6584.15288.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6584.15288.1 vs. uniprot
Match: D8LCW5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW5_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 2.960e-22
Identity = 56/101 (55.45%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    1 MQENVFLSDFFSCMGFLPLATQSYIRATMVNLMATPTLLQQPGAVSDHGAAAGYLDTSATEDVCGDTSGA----VEPSACIFWCAVALGALAKGSPVESVS 291
            MQEN FLSDFF C GFLPLAT S+IR TMV +M  P   QQP    D      Y +  A       TS      ++PSAC FWCAVALGALAKGSP+ESV+
Sbjct:    1 MQENAFLSDFFGCNGFLPLATPSHIRETMVKIMLPPASSQQPVLGDDCDEGGHYFEAVARGGDLSKTSAGNRLPMDPSACTFWCAVALGALAKGSPIESVT 101          
BLAST of mRNA_L-elsbetiae_contig6584.15288.1 vs. uniprot
Match: D8LU29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU29_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.960e-22
Identity = 56/99 (56.57%), Postives = 65/99 (65.66%), Query Frame = 1
Query:    1 MQENVFLSDFFSCMGFLPLATQSYIRATMVNLMATPTLLQQPGAVSDHGAAAGYLDTSATEDVCGDTSG---AVEPSACIFWCAVALGALAKGSPVESV 288
            MQEN  LSDFF C+GF+PL T+S+IR  MV +M + T   QPGA  D   A G+  +  TED  G T G   +  PSAC FWCAV LGAL KGSPVESV
Sbjct:   39 MQENACLSDFFGCIGFMPLTTRSHIRGAMVRMMTSSTPHHQPGAPHDS-PAQGHFGSIFTED--GITPGNQLSTGPSACTFWCAVGLGALVKGSPVESV 134          
BLAST of mRNA_L-elsbetiae_contig6584.15288.1 vs. uniprot
Match: D8LU22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU22_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 6.020e-22
Identity = 57/101 (56.44%), Postives = 66/101 (65.35%), Query Frame = 1
Query:    1 MQENVFLSDFFSCMGFLPLATQSYIRATMVNLMATPTLLQQPGAVSDHGAAAGYLDTSATEDVCGDTSG---AVEPSACIFWCAVALGALAKGSPVESVSR 294
            MQENVFLSDFF C+GFLPL T+S+IR TM+ +MA      QPGA  D     G      TED  G T+G   +  PSAC FWCAV +GAL KGSPVESV+ 
Sbjct:    1 MQENVFLSDFFGCVGFLPLTTRSHIRGTMMRMMAHSAAQYQPGARHDS-PDQGQFGAIFTED--GITTGNQLSTGPSACTFWCAVGVGALVKGSPVESVAN 98          
BLAST of mRNA_L-elsbetiae_contig6584.15288.1 vs. uniprot
Match: A0A6H5K8E7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E7_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.900e-20
Identity = 48/98 (48.98%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 MQENVFLSDFFSCMGFLPLATQSYIRATMVNLMATPTLLQQPGAVSDHGAAAGYLDTSATEDVCGDTSGAVEPSACIFWCAVALGALAKGSPVESVSR 294
            MQEN FLSDFF C+GF+P  ++S+IR  MV +MA  T   QPGA  +    + + DT   + +         PS C FWCAV +GALAKGSPVESV+ 
Sbjct:  112 MQENAFLSDFFGCVGFMPFTSRSHIRGAMVRMMARSTAQHQPGARHNSPEQSQFGDTFTEDGITPGNQLLTGPSCCTFWCAVGMGALAKGSPVESVAN 209          
BLAST of mRNA_L-elsbetiae_contig6584.15288.1 vs. uniprot
Match: D8LU13_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU13_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.910e-20
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 MQENVFLSDFFSCMGFLPLATQSYIRATMVNLMATPTLLQQPGAVSDHGAAAGYLDTSATEDVCGDTSG---AVEPSACIFWCAVALGALAKGSPVESVSR 294
            MQE+ FLSDFF C+GFLPL T+S IR  MV +MATP  LQ+P         A +   +  ED+   + G    + P +C FWCA+ALGALAKGSP ESV++
Sbjct:  119 MQESAFLSDFFGCVGFLPLTTRSTIREAMVQIMATPATLQRPAVGGGCDEEALFDAIARGEDLINASEGHQHPMNPRSCTFWCAIALGALAKGSPFESVAK 219          
BLAST of mRNA_L-elsbetiae_contig6584.15288.1 vs. uniprot
Match: D8LU09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU09_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.430e-20
Identity = 48/98 (48.98%), Postives = 60/98 (61.22%), Query Frame = 1
Query:    1 MQENVFLSDFFSCMGFLPLATQSYIRATMVNLMATPTLLQQPGAVSDHGAAAGYLDTSATEDVCGDTSGAVEPSACIFWCAVALGALAKGSPVESVSR 294
            MQEN FLSDFF C+GF+PL + S+IR TMV +MA+P  LQQ       G     +               ++PS C FWCA+ALGALAKG PVESV++
Sbjct:   20 MQENAFLSDFFGCVGFVPLTSHSHIRETMVKIMASPAPLQQSAIGGAFGGVGSMVRARCWNKASEKPQLPMDPSTCTFWCAIALGALAKGCPVESVAK 117          
BLAST of mRNA_L-elsbetiae_contig6584.15288.1 vs. uniprot
Match: D8LU10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU10_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 6.190e-20
Identity = 50/101 (49.50%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 MQENVFLSDFFSCMGFLPLATQSYIRATMVNLMATPTLLQQPG--AVSDHGAAAGYLDTSATEDVCGDTSGA-VEPSACIFWCAVALGALAKGSPVESVSR 294
            M+E+VFLSDFF C+GFLPL TQS+IR TMV +M  P  LQQP    + D       ++  A      D +   + P +C FWCA+ALGA+AKG+PVESV +
Sbjct:    1 MEESVFLSDFFGCVGFLPLTTQSHIRETMVEMMTAPAPLQQPAIAGIWDEETRFSEIERRANCRKASDVNQLPMNPQSCTFWCAIALGAVAKGNPVESVEK 101          
BLAST of mRNA_L-elsbetiae_contig6584.15288.1 vs. uniprot
Match: D8LCV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV1_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 6.630e-20
Identity = 53/101 (52.48%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 MQENVFLSDFFSCMGFLPLATQSYIRATMVNLMATPTLLQQPGAVSDHGAAAGYLDTSATEDVCGDTSGA----VEPSACIFWCAVALGALAKGSPVESVS 291
            MQEN FLSDFF C+GFLPL T S+IR TMV +M      QQ     D      Y +  A       TS      ++PSAC FWCAVALGALAKGSP+ESV+
Sbjct:   24 MQENAFLSDFFGCVGFLPLTTPSHIRETMVTIMLPRASSQQSVFGDDCDEGGHYFEAVAPGGDLSKTSARNQFPMDPSACTFWCAVALGALAKGSPIESVT 124          
BLAST of mRNA_L-elsbetiae_contig6584.15288.1 vs. uniprot
Match: D8LU05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU05_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.100e-19
Identity = 52/101 (51.49%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 MQENVFLSDFFSCMGFLPLATQSYIRATMVNLMATPTLLQQPGAVSDHGAAAGYLDTSATEDVCGDTSGA----VEPSACIFWCAVALGALAKGSPVESVS 291
            M+EN FLSDFF C+GFLPL T S+IR TMV +M  P+ LQQ    +D  +    +DT+A        S      ++PS C FWCA+ALGALAKGSP+ES S
Sbjct:    1 MEENAFLSDFFGCVGFLPLTTTSHIRETMVKIMTPPSSLQQSAVGADERS----VDTNAPGANLIKASERNQLPMDPSTCTFWCAIALGALAKGSPIESTS 97          
BLAST of mRNA_L-elsbetiae_contig6584.15288.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.670e-19
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 MQENVFLSDFFSCMGFLPLATQSYIRATMVNLMATPTLLQQP---GAVSDHGAAAGYLDTSATEDVCGDTSGAVEPSACIFWCAVALGALAKGSPVESVSR 294
            MQEN FLSDFF C+GF+PL + S+IR TMV +MA+P  LQQ    GA S+ G     +      +        ++ S C FWCA+ALGALAKGSPVESV++
Sbjct:  124 MQENAFLSDFFGCVGFVPLTSHSHIRETMVRIMASPAPLQQSAIGGACSEVGT---MVRAPCWNEASERNQLPMDASTCTFWCAIALGALAKGSPVESVAK 221          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6584.15288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCW5_ECTSI2.960e-2255.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU29_ECTSI3.960e-2256.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU22_ECTSI6.020e-2256.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8E7_9PHAE1.900e-2048.98Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU13_ECTSI1.910e-2050.50Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU09_ECTSI2.430e-2048.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU10_ECTSI6.190e-2049.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCV1_ECTSI6.630e-2052.48Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D8LU05_ECTSI1.100e-1951.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYW4_9PHAE1.670e-1950.50Zn(2)-C6 fungal-type domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6584contigL-elsbetiae_contig6584:3197..3837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_000650.1
Exons2
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.2983413-CDS-L-elsbetiae_contig6584:3196..32641622816727.2983413-CDS-L-elsbetiae_contig6584:3196..3264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6584 3197..3264 +
1691683768.9770274-CDS-L-elsbetiae_contig6584:3196..32641691683768.9770274-CDS-L-elsbetiae_contig6584:3196..3264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6584 3197..3264 +
1622816727.3110037-CDS-L-elsbetiae_contig6584:3611..38371622816727.3110037-CDS-L-elsbetiae_contig6584:3611..3837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6584 3612..3837 +
1691683768.987881-CDS-L-elsbetiae_contig6584:3611..38371691683768.987881-CDS-L-elsbetiae_contig6584:3611..3837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6584 3612..3837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6584.15288.1prot_L-elsbetiae_contig6584.15288.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6584 3197..3837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6584.15288.1

>prot_L-elsbetiae_contig6584.15288.1 ID=prot_L-elsbetiae_contig6584.15288.1|Name=mRNA_L-elsbetiae_contig6584.15288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MQENVFLSDFFSCMGFLPLATQSYIRATMVNLMATPTLLQQPGAVSDHGA
AAGYLDTSATEDVCGDTSGAVEPSACIFWCAVALGALAKGSPVESVSR
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mRNA from alignment at L-elsbetiae_contig6584:3197..3837+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6584.15288.1 ID=mRNA_L-elsbetiae_contig6584.15288.1|Name=mRNA_L-elsbetiae_contig6584.15288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=641bp|location=Sequence derived from alignment at L-elsbetiae_contig6584:3197..3837+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAGAGAATGTCTTCCTCAGCGACTTTTTCAGCTGTATGGGCTTCCT GCCTCTCGCCACGCAAAGGTACCCCCCGCAGGCAGGATCACCTGTAACAT TATTGTTATTATCATTATTATTTAATATGTGCCTGTAGATACACATTTTT TGAACCTGCGCGCGGACGCCGGGCACAGGTTATTATTTGCGAAGAACACC GCTATCTTGTGTATACGGTACACACCCATGAACGCAAATCACACAGCGCG TGAGTACGCAAAGCCATCAAGTATGCTACGGTCAAATTCGCACGGTGCCG CGAAGAGTGGTTTCGCCACTCGTTTCTCGTTTACTCACGCACGGCCCGGC CCGCCTGTGCCACGCTTACCTGCCAAACCAATCTCTGCTGCTGCTGCTGC TGCTGCTGCTGTCAGCTACATTCGGGCAACGATGGTGAACCTTATGGCCA CCCCTACTCTCTTACAGCAGCCAGGCGCTGTGTCGGACCACGGTGCCGCA GCAGGGTATCTGGACACAAGCGCCACAGAAGATGTATGTGGCGATACCTC GGGAGCCGTGGAGCCCTCTGCTTGCATTTTTTGGTGCGCCGTTGCGCTAG GAGCCCTCGCAAAGGGCTCTCCCGTCGAGTCGGTGAGCAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6584:3197..3837+

>mRNA_L-elsbetiae_contig6584.15288.1 ID=mRNA_L-elsbetiae_contig6584.15288.1|Name=mRNA_L-elsbetiae_contig6584.15288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig6584:3197..3837+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAGAGAATGTCTTCCTCAGCGACTTTTTCAGCTGTATGGGCTTCCT
GCCTCTCGCCACGCAAAGATGCAAGAGAATGTCTTCCTCAGCGACTTTTT
CAGCTGTATGGGCTTCCTGCCTCTCGCCACGCAAAGCTACATTCGGGCAA
CGATGGTGAACCTTATGGCCACCCCTACTCTCTTACAGCAGCCAGGCGCT
GTGTCGGACCACGGTGCCGCAGCAGGGTATCTGGACACAAGCGCCACAGA
AGATGTATGTGGCGATACCTCGGGAGCCGTGGAGCCCTCTGCTTGCATTT
TTTGGTGCGCCGTTGCGCTAGGAGCCCTCGCAAAGGGCTCTCCCGTCGAG
TCGGTGAGCAGACTACATTCGGGCAACGATGGTGAACCTTATGGCCACCC
CTACTCTCTTACAGCAGCCAGGCGCTGTGTCGGACCACGGTGCCGCAGCA
GGGTATCTGGACACAAGCGCCACAGAAGATGTATGTGGCGATACCTCGGG
AGCCGTGGAGCCCTCTGCTTGCATTTTTTGGTGCGCCGTTGCGCTAGGAG
CCCTCGCAAAGGGCTCTCCCGTCGAGTCGGTGAGCAGA
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