mRNA_L-elsbetiae_contig6570.15275.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6570.15275.1
Unique NamemRNA_L-elsbetiae_contig6570.15275.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6570.15275.1 vs. uniprot
Match: D7FWA1_ECTSI (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWA1_ECTSI)

HSP 1 Score: 313 bits (803), Expect = 5.610e-97
Identity = 151/181 (83.43%), Postives = 163/181 (90.06%), Query Frame = 1 
Query:  121 PTHFSETIRTGLTTAGRMVFKLYTDDVPLTAENFRCLCTGEKGEGRTTGRVLHYKGVPFHRIISGFMCQGGDFEKRNGTGGESIYGGKFKDEPAGLKLKHTKKHLLSMANAGKNSNGSQFFITLAPASHLDGLHVVFGELESGAETLVKMSQVDTDKKDAPISLQRIVVQDCGELLPPRAS 663
            PT     +  G   AGRMVF+LYT+ VPLTAENFRCLCTGEKGEGRTTGR+LHYKGVPFHR+I GFMCQGGDFE+RNGTGGESIYGGKFKDEPAGLKLKH KKHLLSMANAGKNSNGSQFFIT  PASHLDGLHVVFGELESGA+TL KMS+V+TDKKDAPISLQR+V++DCGELLP R S
Sbjct:    6 PTRCFFDMAIGGEPAGRMVFELYTEKVPLTAENFRCLCTGEKGEGRTTGRMLHYKGVPFHRVIPGFMCQGGDFERRNGTGGESIYGGKFKDEPAGLKLKHNKKHLLSMANAGKNSNGSQFFITTDPASHLDGLHVVFGELESGADTLTKMSEVETDKKDAPISLQRVVIEDCGELLPSRGS 186
[Close]
BLAST of mRNA_L-elsbetiae_contig6570.15275.1 vs. uniprot
Match: A0A6H5L3B6_9PHAE (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3B6_9PHAE)

HSP 1 Score: 318 bits (814), Expect = 6.100e-97
Identity = 153/181 (84.53%), Postives = 165/181 (91.16%), Query Frame = 1 
Query:  121 PTHFSETIRTGLTTAGRMVFKLYTDDVPLTAENFRCLCTGEKGEGRTTGRVLHYKGVPFHRIISGFMCQGGDFEKRNGTGGESIYGGKFKDEPAGLKLKHTKKHLLSMANAGKNSNGSQFFITLAPASHLDGLHVVFGELESGAETLVKMSQVDTDKKDAPISLQRIVVQDCGELLPPRAS 663
            PT     I  G   AGRMVFKLYT+ VPLTAENFRCLCTGEKGEGRTTGR+LHYKGVPFHR+I GFMCQGGDFE+RNGTGGESIYGGKFKDEPAGLKLKH KKHLLSMANAGKNSNGSQFFIT  PASHLDGLHVVFGELESGA+TLVKMS+V+TDKKDAPISLQR++++DCGELLP R+S
Sbjct:   30 PTRCFFDISIGGEPAGRMVFKLYTETVPLTAENFRCLCTGEKGEGRTTGRMLHYKGVPFHRVIPGFMCQGGDFERRNGTGGESIYGGKFKDEPAGLKLKHNKKHLLSMANAGKNSNGSQFFITTHPASHLDGLHVVFGELESGADTLVKMSEVETDKKDAPISLQRVIIEDCGELLPSRSS 210
[Close]
BLAST of mRNA_L-elsbetiae_contig6570.15275.1 vs. uniprot
Match: A0A6V1RCR2_HETAK (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RCR2_HETAK)

HSP 1 Score: 221 bits (562), Expect = 1.580e-64
Identity = 109/174 (62.64%), Postives = 131/174 (75.29%), Query Frame = 1 
Query:  124 THFSETIRTGLTTAGRMVFKLYTDDVPLTAENFRCLCTGEKGEGRTTGRVLHYKGVPFHRIISGFMCQGGDFEKRNGTGGESIYGGKFKDEPAGLKLKHTKKHLLSMANAGKNSNGSQFFITLAPASHLDGLHVVFGELESGAETLVKMSQVDTDKKDAPISLQRIVVQDCGEL 645
            T F  TI  G   AGR+VF+LY D VP TAENFR LCTGEKG G TT + LHYKGVPFHRII GFM QGGDF   NGTGGESIYGGKFKDE     +KH +  LLSMANAGK+SNG+QFF+T  P  HLDG HVVFGE+ +G + + +M +V+ D+K+ P++ QR+++ DCGEL
Sbjct:   16 TFFDITI--GGVKAGRIVFELYNDLVPKTAENFRALCTGEKGIGPTTRKPLHYKGVPFHRIIGGFMAQGGDFSNNNGTGGESIYGGKFKDEA--FTVKHGRPGLLSMANAGKDSNGAQFFVTFVPTPHLDGKHVVFGEVVAGMDIVRRMEEVECDRKNCPVAAQRVLIADCGEL 185
[Close]
BLAST of mRNA_L-elsbetiae_contig6570.15275.1 vs. uniprot
Match: A0A8K1CG83_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG83_PYTOL)

HSP 1 Score: 219 bits (558), Expect = 2.830e-63
Identity = 106/168 (63.10%), Postives = 128/168 (76.19%), Query Frame = 1 
Query:  142 IRTGLTTAGRMVFKLYTDDVPLTAENFRCLCTGEKGEGRTTGRVLHYKGVPFHRIISGFMCQGGDFEKRNGTGGESIYGGKFKDEPAGLKLKHTKKHLLSMANAGKNSNGSQFFITLAPASHLDGLHVVFGELESGAETLVKMSQVDTDKKDAPISLQRIVVQDCGEL 645
            I  G  +AGR+VF+LY D VPLT +NFR LCTGE G G+TTG+ LHYKGVPFHRII GFM QGGDF  R+GTGGESIYG +FKDE    + +HTK  LLSMANAG N+NGSQFFIT  P  HLDG HVVFGE+E G + + KM  V+T  KD P+++Q + ++DCGE+
Sbjct:   11 ISIGGASAGRIVFRLY-DGVPLTTDNFRALCTGEAGVGKTTGKPLHYKGVPFHRIIKGFMLQGGDFSNRDGTGGESIYGSRFKDES--FRYRHTKPGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGEVEKGMDVVRKMESVETGVKDRPVAMQTVRIEDCGEV 175
[Close]
BLAST of mRNA_L-elsbetiae_contig6570.15275.1 vs. uniprot
Match: G4ZG38_PHYSP (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZG38_PHYSP)

HSP 1 Score: 208 bits (529), Expect = 7.270e-61
Identity = 100/168 (59.52%), Postives = 126/168 (75.00%), Query Frame = 1 
Query:  142 IRTGLTTAGRMVFKLYTDDVPLTAENFRCLCTGEKGEGRTTGRVLHYKGVPFHRIISGFMCQGGDFEKRNGTGGESIYGGKFKDEPAGLKLKHTKKHLLSMANAGKNSNGSQFFITLAPASHLDGLHVVFGELESGAETLVKMSQVDTDKKDAPISLQRIVVQDCGEL 645
            +  G + AGR+VF+LY   +P T ENFR LCTGE+G GR+TG+ LHYK VPFHR+I GFM QGGDF +RNGTGGESIYG KF DE    + +H+K  LLSMANAG+N+NGSQFFIT  P  HLDG HVVFGE+ESG + + ++  V+T   D P  +Q +V++DCGE+
Sbjct:    8 VSIGGSRAGRIVFRLYPG-LPKTTENFRSLCTGERGLGRSTGKPLHYKKVPFHRVIKGFMLQGGDFSRRNGTGGESIYGDKFADES--FRYRHSKAGLLSMANAGRNTNGSQFFITTVPTPHLDGKHVVFGEVESGMDVVRRVENVETVANDKPAPMQAVVIEDCGEI 172
[Close]
BLAST of mRNA_L-elsbetiae_contig6570.15275.1 vs. uniprot
Match: A0A2P4Y6R2_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6R2_9STRA)

HSP 1 Score: 211 bits (537), Expect = 9.070e-61
Identity = 108/168 (64.29%), Postives = 124/168 (73.81%), Query Frame = 1 
Query:  142 IRTGLTTAGRMVFKLYTDDVPLTAENFRCLCTGEKGEGRTTGRVLHYKGVPFHRIISGFMCQGGDFEKRNGTGGESIYGGKFKDEPAGLKLKHTKKHLLSMANAGKNSNGSQFFITLAPASHLDGLHVVFGELESGAETLVKMSQVDTDKKDAPISLQRIVVQDCGEL 645
            I  G + AGR+VF+LY   +P TAENFR LCTGE+G GRTTG+ LHYK VPFHRII GFM QGGDF  RNGTGGESIYG KF DE    K +HTK  LLSMANAGKN+NGSQFFIT     HLDG HVVFGE+ SG + + KM  V+T   D P  +Q +V+Q+CGEL
Sbjct:    9 ISIGGSHAGRIVFQLYPG-LPKTAENFRSLCTGERGLGRTTGQPLHYKKVPFHRIIKGFMLQGGDFSNRNGTGGESIYGAKFADES--FKYRHTKAGLLSMANAGKNTNGSQFFITTVATPHLDGKHVVFGEVVSGMDVVRKMENVETVANDKPAPMQAVVIQNCGEL 173
[Close]
BLAST of mRNA_L-elsbetiae_contig6570.15275.1 vs. uniprot
Match: A0A2D4BWY8_PYTIN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWY8_PYTIN)

HSP 1 Score: 208 bits (530), Expect = 1.330e-60
Identity = 101/167 (60.48%), Postives = 127/167 (76.05%), Query Frame = 1 
Query:  142 IRTGLTTAGRMVFKLYTDDVPLTAENFRCLCTGEKGEGRTTGRVLHYKGVPFHRIISGFMCQGGDFEKRNGTGGESIYGGKFKDEPAGLKLKHTKKHLLSMANAGKNSNGSQFFITLAPASHLDGLHVVFGELESGAETLVKMSQVDTDKKDAPISLQRIVVQDCGE 642
            I  G  +AGR+VFKLY DDVP T+ENFR LCTGE G G+TTG+ LH+KG  FHR+I GFM QGGDF  R+GTGGESIYG +F DE    + +HT+  LLSMANAG+N+NGSQFFIT  P  HLDG HVVFGE+ESG + + K+  V+T  +D P+++Q + ++DCGE
Sbjct:    7 ISIGGESAGRIVFKLY-DDVPKTSENFRGLCTGEYGIGKTTGKPLHFKGSVFHRVIKGFMLQGGDFSNRDGTGGESIYGSRFADES--FRHRHTRAGLLSMANAGRNTNGSQFFITTVPTPHLDGKHVVFGEVESGMDVVRKIENVETGPRDRPVAMQTVSIEDCGE 170
[Close]
BLAST of mRNA_L-elsbetiae_contig6570.15275.1 vs. uniprot
Match: H3G611_PHYRM (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G611_PHYRM)

HSP 1 Score: 206 bits (523), Expect = 5.210e-60
Identity = 100/168 (59.52%), Postives = 123/168 (73.21%), Query Frame = 1 
Query:  142 IRTGLTTAGRMVFKLYTDDVPLTAENFRCLCTGEKGEGRTTGRVLHYKGVPFHRIISGFMCQGGDFEKRNGTGGESIYGGKFKDEPAGLKLKHTKKHLLSMANAGKNSNGSQFFITLAPASHLDGLHVVFGELESGAETLVKMSQVDTDKKDAPISLQRIVVQDCGEL 645
            +  G + AGR+ F+L+   +P T ENFR LCTGE+G GRTTG+ LHYK VPFHR+I GFM QGGD    +GTGGESIYGGKF+DE    + +H K  LLSMANAGKN+NGSQFFIT  P  HLDG HVVFGE+  G + + KM  V+T  KD P ++Q +V++DCGEL
Sbjct:    6 VSIGGSRAGRVEFQLFPG-LPKTTENFRSLCTGERGLGRTTGKALHYKTVPFHRVIKGFMLQGGDLSNHDGTGGESIYGGKFEDES--FRYRHAKAGLLSMANAGKNTNGSQFFITTVPTPHLDGKHVVFGEVVRGIDVMKKMESVETVAKDKPAAMQSVVIEDCGEL 170
[Close]
BLAST of mRNA_L-elsbetiae_contig6570.15275.1 vs. uniprot
Match: A0A8J5J6B2_9STRA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J6B2_9STRA)

HSP 1 Score: 207 bits (527), Expect = 4.730e-59
Identity = 102/168 (60.71%), Postives = 125/168 (74.40%), Query Frame = 1 
Query:  142 IRTGLTTAGRMVFKLYTDDVPLTAENFRCLCTGEKGEGRTTGRVLHYKGVPFHRIISGFMCQGGDFEKRNGTGGESIYGGKFKDEPAGLKLKHTKKHLLSMANAGKNSNGSQFFITLAPASHLDGLHVVFGELESGAETLVKMSQVDTDKKDAPISLQRIVVQDCGEL 645
            +  G ++AGR+V +LY D VP T ENFR LCTGE+G GRTTG+ LHY+ VPFHRII GFM QGGDF  R+GTGGESIYG KF DE  G + +HTK  LLSMANAGKN+NGSQFFIT  P  HLDG HVVFGE+  G + + KM  V+T   + P  +Q +V+++CGE+
Sbjct:   11 VSIGGSSAGRIVIRLYPD-VPKTTENFRSLCTGERGLGRTTGKPLHYRKVPFHRIIKGFMLQGGDFSNRDGTGGESIYGSKFADE--GFRYRHTKAGLLSMANAGKNTNGSQFFITTVPTPHLDGKHVVFGEVIRGMDVVRKMENVETVVNNKPAPMQAVVIEECGEV 175
[Close]
BLAST of mRNA_L-elsbetiae_contig6570.15275.1 vs. uniprot
Match: A0A4P9WK01_9FUNG (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WK01_9FUNG)

HSP 1 Score: 202 bits (514), Expect = 6.950e-59
Identity = 98/159 (61.64%), Postives = 119/159 (74.84%), Query Frame = 1 
Query:  169 RMVFKLYTDDVPLTAENFRCLCTGEKGEGRTTGRVLHYKGVPFHRIISGFMCQGGDFEKRNGTGGESIYGGKFKDEPAGLKLKHTKKHLLSMANAGKNSNGSQFFITLAPASHLDGLHVVFGELESGAETLVKMSQVDTDKKDAPISLQRIVVQDCGEL 645
            R+VF+L+ D+VP TAENFR LCTGE+G   T+  VLHYK  PFHR+++GFM QGGDF   +GTGGESIYGG F+DE  G K KHT++HLLSMAN G N+NGSQFFIT  P  HLDG HVVFG +  GA+ + K+  + TDKKD P    R+VV +CGEL
Sbjct:    1 RIVFELFADEVPRTAENFRALCTGERGRSSTSSNVLHYKNSPFHRVVAGFMIQGGDFTNGDGTGGESIYGGMFEDE-GGFKRKHTREHLLSMANRGVNTNGSQFFITACPTPHLDGKHVVFGRVIGGADVVRKIEALPTDKKDRPHD--RVVVTNCGEL 156
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6570.15275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWA1_ECTSI5.610e-9783.43PPIase cyclophilin-type domain-containing protein ... [more]
A0A6H5L3B6_9PHAE6.100e-9784.53PPIase cyclophilin-type domain-containing protein ... [more]
A0A6V1RCR2_HETAK1.580e-6462.64Peptidyl-prolyl cis-trans isomerase n=2 Tax=Hetero... [more]
A0A8K1CG83_PYTOL2.830e-6363.10Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
G4ZG38_PHYSP7.270e-6159.52Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A2P4Y6R2_9STRA9.070e-6164.29Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytop... [more]
A0A2D4BWY8_PYTIN1.330e-6060.48Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pythiu... [more]
H3G611_PHYRM5.210e-6059.52Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytop... [more]
A0A8J5J6B2_9STRA4.730e-5960.71PPIase cyclophilin-type domain-containing protein ... [more]
A0A4P9WK01_9FUNG6.950e-5961.64Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6570contigL-elsbetiae_contig6570:4849..10883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.8
Seed ortholog evalue1e-83
Seed eggNOG ortholog2880.D7FWA1
Preferred namePPIG
KEGG koko:K01802,ko:K05864,ko:K09566,ko:K12740
KEGG Pathwayko04217,ko04218,map04217,map04218
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006139,GO:0006396,GO:0006397,GO:0006457,GO:0006464,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016018,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0030198,GO:0031974,GO:0031981,GO:0033218,GO:0034399,GO:0034641,GO:0036211,GO:0042277,GO:0043062,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140096,GO:1901360,GO:1901564
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0546@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko03110
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-01_003910.1
Exons5
Model size1707
Cds size1674
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6570.15275.1prot_L-elsbetiae_contig6570.15275.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6570 4849..10850 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.7482045-CDS-L-elsbetiae_contig6570:4848..60781622816725.7482045-CDS-L-elsbetiae_contig6570:4848..6078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6570 4849..6078 -
1691683767.8070257-CDS-L-elsbetiae_contig6570:4848..60781691683767.8070257-CDS-L-elsbetiae_contig6570:4848..6078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6570 4849..6078 -
1622816725.7590494-CDS-L-elsbetiae_contig6570:7926..80901622816725.7590494-CDS-L-elsbetiae_contig6570:7926..8090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6570 7927..8090 -
1691683767.8182611-CDS-L-elsbetiae_contig6570:7926..80901691683767.8182611-CDS-L-elsbetiae_contig6570:7926..8090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6570 7927..8090 -
1622816725.7691836-CDS-L-elsbetiae_contig6570:8872..88991622816725.7691836-CDS-L-elsbetiae_contig6570:8872..8899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6570 8873..8899 -
1691683767.828884-CDS-L-elsbetiae_contig6570:8872..88991691683767.828884-CDS-L-elsbetiae_contig6570:8872..8899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6570 8873..8899 -
1622816725.779234-CDS-L-elsbetiae_contig6570:10050..101731622816725.779234-CDS-L-elsbetiae_contig6570:10050..10173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6570 10051..10173 -
1691683767.841668-CDS-L-elsbetiae_contig6570:10050..101731691683767.841668-CDS-L-elsbetiae_contig6570:10050..10173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6570 10051..10173 -
1622816725.7916236-CDS-L-elsbetiae_contig6570:10720..108501622816725.7916236-CDS-L-elsbetiae_contig6570:10720..10850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6570 10721..10850 -
1691683767.8520966-CDS-L-elsbetiae_contig6570:10720..108501691683767.8520966-CDS-L-elsbetiae_contig6570:10720..10850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6570 10721..10850 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.8065603-UTR-L-elsbetiae_contig6570:10850..108831622816725.8065603-UTR-L-elsbetiae_contig6570:10850..10883Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6570 10851..10883 -
1691683767.8628323-UTR-L-elsbetiae_contig6570:10850..108831691683767.8628323-UTR-L-elsbetiae_contig6570:10850..10883Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6570 10851..10883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6570.15275.1

>prot_L-elsbetiae_contig6570.15275.1 ID=prot_L-elsbetiae_contig6570.15275.1|Name=mRNA_L-elsbetiae_contig6570.15275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=558bp
MRFRAVAPFPIGILCPPKGFLREPGIKPFPTHFSETIRTGLTTAGRMVFK
LYTDDVPLTAENFRCLCTGEKGEGRTTGRVLHYKGVPFHRIISGFMCQGG
DFEKRNGTGGESIYGGKFKDEPAGLKLKHTKKHLLSMANAGKNSNGSQFF
ITLAPASHLDGLHVVFGELESGAETLVKMSQVDTDKKDAPISLQRIVVQD
CGELLPPRASKHHHHRHHRHKSHDDVGGGGGGGGGGGGGRENGGGAGRKK
GDTPEKDKKALKRERKKEKKAEKKRNKKSKKKGKHHHRRHRRGGSSDDES
GDEGESSGDDSSDDESDAGGGDRKRRKRESKHKRKAATKKGRKKETKHTK
KGRKAAESSGSSSGSGSDAEDAPRGAGGRGKGGDGHANGNGVAAGRSAEN
GARSEPANGSRRHAAPETRRPASPRGVSPSPPRKGAGRHARSRSRSRSSA
QGKRAADNNSNDQPDDGRTRFKGRGARVYRSPSPRRGGGGGGGGGGGGDR
DRDGRYNRPRDGGGRDGGRDGGRDGGRGGGGARDSDRRDRDADNRGGGRY
GRYDNNDR
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mRNA from alignment at L-elsbetiae_contig6570:4849..10883-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6570.15275.1 ID=mRNA_L-elsbetiae_contig6570.15275.1|Name=mRNA_L-elsbetiae_contig6570.15275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6035bp|location=Sequence derived from alignment at L-elsbetiae_contig6570:4849..10883- (Laminarionema elsbetiae ELsaHSoW15)
CCGTGAGCAGGAGGGCGAGCAATCGGTGGTGCCATGCGTTTTCGGGCCGT
TGCACCATTTCCCATCGGCATTTTGTGCCCCCCGAAGGGGTTTCTCCGCG
AACCAGGCATAAAACCATTTCCTACCCACTTTTCGGAGACCATAAGAACT
GGTCTAACTACAGGTAGGTGCTGTTTCTACGGGCGCTGGCCTCGCGGAGC
CCCTCCGTGTCTGTTTTGATGCAGCCCTTAACCTATAGGTCGTTTCGCCT
GGGATGGGGCGTGTAAGTTCCTAGGGCTGGCGAACTTGTGCAAATATATG
CCTCGACAGGGCGGGCTTTTTTGGTAATGAGGGGGGTATTGTTTTTTTTG
CGTGTTTTCGTCTGCGAGGCCCCCCGCACAACAGTTTGTGGACGCCCTAA
ATCATTCGTACTCCGCCACTGGAGCTTCGATTGGCTTTGTTTTTTCGTGC
TCCACCCTCGAGACACACCAGAGCTATAGGACTAAGCTTGGTTCGTCACA
AAAGCTTGGCTCAGCGGCGGGCACTTCCCAAGAAACAGCTCACTTCTGCG
CCTCCTTGAGAAAACGATCTCACATACACATGTATATCACTGTTGTCTAT
GAATGCAGACGCCCCGCCAGGCAGTCGTTGTTGTAATTATCTCTCTCCTT
CCTCCACCCCACCCTCCCCCCTACATACGCCAATCGCATCTGCGGTACAC
ACGGACGAAGCCGGGCGCATGGTGTTCAAGCTCTACACGGACGACGTGCC
GTTGACGGCGGAGAACTTTCGATGCCTGTGCACCGGCGAGAAGGGGGAGG
GCAGGACTACAGGCCGCGTTCTGCACTACAAGGGTTAGTGTGTCTTTATC
TAGAAATATCTGTGTACGCACGTGGGCTGAAAATGGGATACAAGGCATCT
GCAGCTCTCATGTACGAGCAGCTGAAGTTATCAGCCAGATCCGATGAACG
CTATGTAGAGAGAGACGGTTCTTGCATGTGTAGTCTAAGGTTAAACGAGC
GCTACGAGCCAGATGCGATGAGCGCTAGAGAGTGAATGGGGTCCTCTTCT
TGCTCTGTAGGCAGTGCTGAGACACGGGCGTGAGCTTGTGAGCGTTCAAT
CCCGGTGAGGTCTGATGTCTAGAAGCGCTTTTCTGTAGTTTTGTTAAAAC
CGTTTGGGGGGGGGGGGGGGGGGAGGGGAGAGAGAAGAGTCGCCGGGACA
TGATTCCCGGTTTGACCGTGAGTTTCAGGTCTGATCTCGCTGAGGGGCCG
AAGCTTCGTCTTGATCGCGCGACCCAGCAACACCGGCGCGAACATTGGAG
GGGTTGATGTCCCTGGCGTGCGGGGCTGAGCTGAAACGCCTCGATCCCAA
CCCTGGCCTCGCTCGAGGAGGGGTGATTCAAACCGGAACTCCCAACCGGC
GCGTGCAGACCTTGCTTGTGTACACTCGCCGGTTGCGTTGAAGTTGGCGT
ACGTAGAGTGAGCCGTGCTCTTGCATTCCCGATGAGCACCACAGGGTGTT
TTTGTGCTACTTATCTTATACCTACCCGGAACAGCGGTAATAGTGTCTGC
TCTTGACTCATATATATACTGCAAGGTTTTTTGTCGTGGTTGCAGAGGAC
GACTGCTGTGTCCATAAGCCGGTGTTTGTCTCCAATCCTCCGGGGGGGGG
GGGTCCTCCCTCCTTCCCCCCTTCCATCTGCGGTCCTCCCTCTTTTTTCC
CGTCCCTGTGGGGTCGATTTGGCCCACCACCGCCTCTCTGTATTTTGTGT
TTCTTCTGCTGTATGCTTTTTGTCTGACCTTCTTTCCTCGTGTTCTCGTC
GCTCTCTCTGGCGCGCTCTGCCTGTCTCTCTACCGCTGCTTGCTTGCTCG
CTCTCCCCTTTTCAACCGCTTCGCTGTGCGTCTTTTTCTCCCCCCCCCCC
CTCTCTCTCTCTCTCTCTGTGCACGCACATCCCTTGCGTGGTGCTGTCTC
TCCTGGATCCGCGGTGTCTCCTTTGCTTCACCAGGGGTCCCCTTCCACCG
TATTATATCAGGTGTGTGTCTTTTTGGAACCCTTGTTTTTGTTCCCTGTG
TTTTTGTTTTGTCGACACGCGCGGTAGGTTGTTGTTGTCGGCGCTGCTGG
AATATACCTGTATGTGCTCCTTACTGTGTGTAGCAGTGTGGGGAGATGTG
CGTGCGGGTGCTGCTGCGCATGGCTTTTGCGGGTTAATATCTTGTTTTGG
CGAATGGGATGAAAAACAAAATCGTCGAATATGAAGCCTTGTTTTTAATT
GTTGCGGAACCGCCATGGGGATACGGGGGCGATAAGTACTGGTGACGGGT
TCATCTGTCGGTTAAGGTGTCGTGCTATAATATAAGTTTTAAATATCCTA
GGTAATATATTACCTCCGAAAGAGTCGTGTTGTGACAAGTTGTGTGCTGA
TTGGGCCTTCCCTGAGCTTCGAACATGACACGACTCACACGATTCGGTTT
ATTGCGGGAAGCTCCGCGGTAACGCATCGGTCGATTATCGGCACAAAAAT
ACCCGTTAGTCCTTCCCTCCCTTCCCACCCACCCCCGCTGTGTGTCGTTC
CTCGCTGAATAACCTGCTCGCAACCGGCCAGTGTTCACCTCCTCCTATGT
GACCCCGGTTGGTTCTAGTTGTACAGACAAACGCACTGCAAAGTGTAGTA
CCTCTTAGTACACCGCAAGGTGTAGTACATGTCTCCACTTGGGGGGACTG
TCGCCAAAATAAATGGGAAGGACACACACACACACAAACCGGCTCGTTTG
CTCCCCCTCCCCCCCCCTCTCTCTCTCTGTTGCGCCGGTCCAGGCTTCAT
GTGCCAGGGGGGCGACTTTGAGAAGCGGAACGGGACGGGCGGCGAGAGCA
TCTACGGGGGAAAGTTCAAGGACGAGCCCGCTGGCCTCAAGCTCAAGCAC
ACCAAGAAGCACCTGCTGTCGATGGCGAATGCCGGCAAGAACAGCAACGG
CAGCCAGGTGACTTTTTTCGAAAGGGGGGCAATGTACACCTCTATAAGAA
CGAGCATATATCCATCTGTGGGCGGCGTCGCGGACTTAAAGAGTCAAATC
CTTCCCGCTTCCGTTTGTACGCGTAATGAATCCAGCCATTTCCGAAGCCT
ACAGCCAAGCTATTTATGTATGTAGGGCACGTTTTTTTTTTTGCGCCGTC
TTTTTATTTTAAGGAGAAAAATTGAAAAATGTAAGCCGCACACCCCACCC
CGTAAGTTTCGTGTTGTGGCGTTTGCTGTGCATGGTGCTACGGGCCCACG
CGACTGCTCGGGGTTCACAGACGTCACGACATCGTACGCATGTATGTCAC
ACAGGTACCTCCTCCACGAAGAAGCTTCGTTTGTGCGGGGCGTTGCGTTG
ATATGAAAGTGCCGACAGAGGAAATCAGAGACACACGCACCCACAGACAC
TCGGGCAGCACCATCCTGTTAGTGGAGCTACTACTGTACTTTTCATGGCA
ACAGAAGCAGCGGCCCGTTATAATGTTCAATGCTCGGCACGCACAGAGTC
AAGAAATCCCGTGGACGTCGAACAATATTATTGCCCATGCACGCAGGCAG
GGCAGGCAGGCACTTTGCTTCCAGAATATTCGTTTTTTTTATGTACATAC
ATATAGGAAGTACTGTGTCCGTACTGCAGGCAGGCACGCAGACATTCATT
GTCCCACGTTCTCCTCACCCAAGCACATGCATGCAGGCCATGAGGCGTGT
AGCCATTAGCTGTCCGCGTGAGGAAGCACATACTTGTACCTCAAAAATCT
ACTCACCAGTGAATGCTGTTCACCTTACGAAGGATGTTCTCCTACGGGGC
ATAATACAGCGTAGCCCATCCCCCCCCCCCCGATATAGGGGTGCAGGCGA
AGCCCCCCTTGTACTATACACTACAAAAGTGGAGAGGAGAACTCGCCCAG
CACAGAAAGAAGAGCACAAGCAGATTTCGGCCCGCTCACAAGAAGCTGAG
ATGTAGGCCAAGGCTGGGTTTCTGACGCGAGGCCAAATATTCTCGCCGTC
TCTTTACCAAGGATTGGGCAGAGATGCGCAGGGGAGATGGTGAATTCTTC
CGACATTTTCGGTGCTTTTCTACTCGGTCGGCCCAATATTACGTCACTAA
AAAGAAGAAAAAGCCCCAGTGTTCACCTCCTCCTGTGTGACCCCGGTTGG
TTCTAGTTGTACAGACAAACGCACTGCAAAGTGTAGTACCTCTAAGTACA
CCGCAAGGTGTAGTACACGTCTCCACTTGGGGGGACTGTCGCCAAAATAA
ATGGGAAGGACACACACACACATATGGAATACCGATTGAATCTCTTACGG
AGTCCCGTCTCAAGATGTGTTGATTTCCATTTTTGATGAACTACTGTTTC
TCTTTCGGAAGGATTTAGTGCGGTACTACTCGCCACTCGCCGCGGCGCCC
CCGCACGCTCCTATTTTTTTCTTAAAAACCTCGGCTTGCCTTTCCTACAA
AATGTTCTTCTTTTAAGAGCGGGCCGGACCGGTACTGCTGTAGTACATAC
CCCAGCCTGATCTGCCGGAGAGAAAAGTTTGCGGCAATAGGCTCGATCGT
GGACGAGACAAACAGAAGTCATCGAGTGTCGAGTATTTCAGCCGCCCTTT
TTTTCCCCGCTTCACGATGACGGGGTTAATACTTCCGCCCCCCTCTCGCG
TTCTTTTTCCTCGGTGTTGCTTTTTACGTTGCTCCACTTGGCGATTTTTC
CGGGTTTCCGCGACCTGACTCCCGTGTTTTTGTTCGCGTGCTTGCTCCGT
CTCTACTGCTACCTTGGTCTTGGGGGCCACTTGCATCAACAACAACCCCT
TTCAGTTCTTCATCACTCTTGCCCCGGCGAGCCACCTGGACGGGCTCCAC
GTGGTGTTCGGGGAGCTCGAGTCTGGTGCGGAGACCCTCGTCAAGATGTC
CCAGGTGGACACCGACAAAAAGGACGCCCCGATCTCCCTGCAGAGGATAG
TGGTGCAAGATTGCGGAGAGCTGCTGCCTCCCCGCGCCTCCAAGCACCAC
CACCACCGCCACCACCGCCACAAAAGCCACGACGACGTCGGAGGAGGAGG
GGGCGGCGGCGGCGGCGGCGGCGGCGGCAGGGAGAACGGCGGCGGGGCCG
GGAGGAAGAAGGGCGACACGCCGGAGAAGGACAAGAAAGCGCTGAAGCGG
GAGAGGAAGAAGGAGAAGAAGGCCGAGAAGAAGCGCAACAAGAAGAGCAA
GAAGAAGGGGAAGCACCACCACCGCCGCCACCGTCGCGGGGGGTCGTCCG
ACGACGAGTCCGGCGACGAAGGAGAATCTTCCGGTGACGACTCCAGCGAC
GACGAGTCGGACGCGGGGGGCGGGGACCGCAAGCGGCGCAAGCGCGAGAG
CAAGCACAAGCGCAAGGCGGCCACCAAGAAGGGCCGCAAGAAAGAAACCA
AGCACACGAAAAAGGGGAGGAAGGCTGCCGAGAGCAGCGGGAGCAGCAGC
GGCAGCGGCAGCGACGCCGAGGACGCGCCCCGCGGCGCTGGCGGCCGCGG
CAAGGGGGGCGACGGACACGCGAACGGGAACGGCGTGGCCGCCGGCAGGA
GCGCAGAGAACGGCGCCCGATCCGAGCCGGCGAACGGCAGCCGCCGACAT
GCAGCACCGGAGACGAGGCGGCCCGCGTCCCCTCGTGGGGTGTCTCCCTC
GCCGCCCAGGAAGGGAGCGGGGCGCCACGCAAGGAGCCGCAGCCGCAGCA
GAAGCAGCGCGCAGGGCAAGAGGGCTGCGGACAACAACAGCAACGACCAG
CCGGACGACGGCCGCACCCGCTTCAAGGGCCGGGGTGCGCGAGTTTACCG
CTCGCCGTCGCCTCGCCGCGGCGGCGGCGGCGGCGGCGGTGGCGGTGGCG
GCGGCGACAGAGACAGGGATGGCCGGTACAATCGTCCCCGGGACGGCGGT
GGCCGTGATGGCGGCCGTGATGGCGGCCGTGATGGTGGTCGCGGTGGTGG
TGGAGCGAGGGACAGTGACCGGCGCGACCGCGACGCCGACAACAGGGGAG
GGGGGCGGTACGGCCGGTACGACAACAACGACCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6570:4849..10883-

>mRNA_L-elsbetiae_contig6570.15275.1 ID=mRNA_L-elsbetiae_contig6570.15275.1|Name=mRNA_L-elsbetiae_contig6570.15275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3348bp|location=Sequence derived from alignment at L-elsbetiae_contig6570:4849..10883- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTTTTCGGGCCGTTGCACCATTTCCCATCGGCATTTTGTGCCCCCC
GAAGGGGTTTCTCCGCGAACCAGGCATAAAACCATTTCCTACCCACTTTT
CGGAGACCATAAGAACTGGTCTAACTACAGATGCGTTTTCGGGCCGTTGC
ACCATTTCCCATCGGCATTTTGTGCCCCCCGAAGGGGTTTCTCCGCGAAC
CAGGCATAAAACCATTTCCTACCCACTTTTCGGAGACCATAAGAACTGGT
CTAACTACAGCCGGGCGCATGGTGTTCAAGCTCTACACGGACGACGTGCC
GTTGACGGCGGAGAACTTTCGATGCCTGTGCACCGGCGAGAAGGGGGAGG
GCAGGACTACAGGCCGCGTTCTGCACTACAAGGCCGGGCGCATGGTGTTC
AAGCTCTACACGGACGACGTGCCGTTGACGGCGGAGAACTTTCGATGCCT
GTGCACCGGCGAGAAGGGGGAGGGCAGGACTACAGGCCGCGTTCTGCACT
ACAAGGGGGTCCCCTTCCACCGTATTATATCAGGGGTCCCCTTCCACCGT
ATTATATCAGGCTTCATGTGCCAGGGGGGCGACTTTGAGAAGCGGAACGG
GACGGGCGGCGAGAGCATCTACGGGGGAAAGTTCAAGGACGAGCCCGCTG
GCCTCAAGCTCAAGCACACCAAGAAGCACCTGCTGTCGATGGCGAATGCC
GGCAAGAACAGCAACGGCAGCCAGGCTTCATGTGCCAGGGGGGCGACTTT
GAGAAGCGGAACGGGACGGGCGGCGAGAGCATCTACGGGGGAAAGTTCAA
GGACGAGCCCGCTGGCCTCAAGCTCAAGCACACCAAGAAGCACCTGCTGT
CGATGGCGAATGCCGGCAAGAACAGCAACGGCAGCCAGTTCTTCATCACT
CTTGCCCCGGCGAGCCACCTGGACGGGCTCCACGTGGTGTTCGGGGAGCT
CGAGTCTGGTGCGGAGACCCTCGTCAAGATGTCCCAGGTGGACACCGACA
AAAAGGACGCCCCGATCTCCCTGCAGAGGATAGTGGTGCAAGATTGCGGA
GAGCTGCTGCCTCCCCGCGCCTCCAAGCACCACCACCACCGCCACCACCG
CCACAAAAGCCACGACGACGTCGGAGGAGGAGGGGGCGGCGGCGGCGGCG
GCGGCGGCGGCAGGGAGAACGGCGGCGGGGCCGGGAGGAAGAAGGGCGAC
ACGCCGGAGAAGGACAAGAAAGCGCTGAAGCGGGAGAGGAAGAAGGAGAA
GAAGGCCGAGAAGAAGCGCAACAAGAAGAGCAAGAAGAAGGGGAAGCACC
ACCACCGCCGCCACCGTCGCGGGGGGTCGTCCGACGACGAGTCCGGCGAC
GAAGGAGAATCTTCCGGTGACGACTCCAGCGACGACGAGTCGGACGCGGG
GGGCGGGGACCGCAAGCGGCGCAAGCGCGAGAGCAAGCACAAGCGCAAGG
CGGCCACCAAGAAGGGCCGCAAGAAAGAAACCAAGCACACGAAAAAGGGG
AGGAAGGCTGCCGAGAGCAGCGGGAGCAGCAGCGGCAGCGGCAGCGACGC
CGAGGACGCGCCCCGCGGCGCTGGCGGCCGCGGCAAGGGGGGCGACGGAC
ACGCGAACGGGAACGGCGTGGCCGCCGGCAGGAGCGCAGAGAACGGCGCC
CGATCCGAGCCGGCGAACGGCAGCCGCCGACATGCAGCACCGGAGACGAG
GCGGCCCGCGTCCCCTCGTGGGGTGTCTCCCTCGCCGCCCAGGAAGGGAG
CGGGGCGCCACGCAAGGAGCCGCAGCCGCAGCAGAAGCAGCGCGCAGGGC
AAGAGGGCTGCGGACAACAACAGCAACGACCAGCCGGACGACGGCCGCAC
CCGCTTCAAGGGCCGGGGTGCGCGAGTTTACCGCTCGCCGTCGCCTCGCC
GCGGCGGCGGCGGCGGCGGCGGTGGCGGTGGCGGCGGCGACAGAGACAGG
GATGGCCGGTACAATCGTCCCCGGGACGGCGGTGGCCGTGATGGCGGCCG
TGATGGCGGCCGTGATGGTGGTCGCGGTGGTGGTGGAGCGAGGGACAGTG
ACCGGCGCGACCGCGACGCCGACAACAGGGGAGGGGGGCGGTACGGCCGG
TACGACAACAACGACCGCTTCTTCATCACTCTTGCCCCGGCGAGCCACCT
GGACGGGCTCCACGTGGTGTTCGGGGAGCTCGAGTCTGGTGCGGAGACCC
TCGTCAAGATGTCCCAGGTGGACACCGACAAAAAGGACGCCCCGATCTCC
CTGCAGAGGATAGTGGTGCAAGATTGCGGAGAGCTGCTGCCTCCCCGCGC
CTCCAAGCACCACCACCACCGCCACCACCGCCACAAAAGCCACGACGACG
TCGGAGGAGGAGGGGGCGGCGGCGGCGGCGGCGGCGGCGGCAGGGAGAAC
GGCGGCGGGGCCGGGAGGAAGAAGGGCGACACGCCGGAGAAGGACAAGAA
AGCGCTGAAGCGGGAGAGGAAGAAGGAGAAGAAGGCCGAGAAGAAGCGCA
ACAAGAAGAGCAAGAAGAAGGGGAAGCACCACCACCGCCGCCACCGTCGC
GGGGGGTCGTCCGACGACGAGTCCGGCGACGAAGGAGAATCTTCCGGTGA
CGACTCCAGCGACGACGAGTCGGACGCGGGGGGCGGGGACCGCAAGCGGC
GCAAGCGCGAGAGCAAGCACAAGCGCAAGGCGGCCACCAAGAAGGGCCGC
AAGAAAGAAACCAAGCACACGAAAAAGGGGAGGAAGGCTGCCGAGAGCAG
CGGGAGCAGCAGCGGCAGCGGCAGCGACGCCGAGGACGCGCCCCGCGGCG
CTGGCGGCCGCGGCAAGGGGGGCGACGGACACGCGAACGGGAACGGCGTG
GCCGCCGGCAGGAGCGCAGAGAACGGCGCCCGATCCGAGCCGGCGAACGG
CAGCCGCCGACATGCAGCACCGGAGACGAGGCGGCCCGCGTCCCCTCGTG
GGGTGTCTCCCTCGCCGCCCAGGAAGGGAGCGGGGCGCCACGCAAGGAGC
CGCAGCCGCAGCAGAAGCAGCGCGCAGGGCAAGAGGGCTGCGGACAACAA
CAGCAACGACCAGCCGGACGACGGCCGCACCCGCTTCAAGGGCCGGGGTG
CGCGAGTTTACCGCTCGCCGTCGCCTCGCCGCGGCGGCGGCGGCGGCGGC
GGTGGCGGTGGCGGCGGCGACAGAGACAGGGATGGCCGGTACAATCGTCC
CCGGGACGGCGGTGGCCGTGATGGCGGCCGTGATGGCGGCCGTGATGGTG
GTCGCGGTGGTGGTGGAGCGAGGGACAGTGACCGGCGCGACCGCGACGCC
GACAACAGGGGAGGGGGGCGGTACGGCCGGTACGACAACAACGACCGC
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