mRNA_L-elsbetiae_contig6569.15270.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6569.15270.1
Unique NamemRNA_L-elsbetiae_contig6569.15270.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6569.15270.1 vs. uniprot
Match: D7FLU4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLU4_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 4.550e-68
Identity = 116/153 (75.82%), Postives = 128/153 (83.66%), Query Frame = 2 
Query:  380 VDPVTNRRSLPRDYGGPMLAPAAWGGEELVVVDAKASLRRLYDAIEGRGMVAIKRNSNGKGRSRVMIRSRIKEKTVGWAHVLPPFTRKFVSVAELMGAQRSSRVVTVRFKNREPV-------------MFETDRLTDALILEQGFVSLAKLQK 799
            V+P T+R+SLPR YGGPMLAP A GGEELVVVD KASLRRLY AIEGRGMVAIKRN NGKGRSRVM+RS+IKE ++GWAHVLPPFTRKFV+V +L GAQRSSR+VTV F+NREPV             MFETD+LTDALILEQGFVSLA LQK
Sbjct:   22 VNPATSRQSLPRGYGGPMLAPGAGGGEELVVVDPKASLRRLYAAIEGRGMVAIKRNPNGKGRSRVMVRSKIKENSIGWAHVLPPFTRKFVNVKDLAGAQRSSRMVTVNFRNREPVSFLLPAFANVIQVMFETDKLTDALILEQGFVSLATLQK 174
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BLAST of mRNA_L-elsbetiae_contig6569.15270.1 vs. uniprot
Match: A0A6H5KY09_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY09_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.240e-10
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:   59 LSSVRPGHRSSQVYDPDAALSVAALLAKEMEEERLLALRGTGGGADG 199
            L+SVRPGHR S++YDPDAALSVAALLAKEMEEER+LAL G  G ADG
Sbjct:  375 LASVRPGHRESEIYDPDAALSVAALLAKEMEEERMLALGG--GDADG 419
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6569.15270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLU4_ECTSI4.550e-6875.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KY09_9PHAE3.240e-1080.85Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6569contigL-elsbetiae_contig6569:2527..4220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1086
Cds size1005
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6569.15270.1prot_L-elsbetiae_contig6569.15270.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6569 2527..4141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.1101623-CDS-L-elsbetiae_contig6569:2526..32471622816725.1101623-CDS-L-elsbetiae_contig6569:2526..3247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6569 2527..3247 +
1691683767.341299-CDS-L-elsbetiae_contig6569:2526..32471691683767.341299-CDS-L-elsbetiae_contig6569:2526..3247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6569 2527..3247 +
1622816725.1257348-CDS-L-elsbetiae_contig6569:3857..41411622816725.1257348-CDS-L-elsbetiae_contig6569:3857..4141Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6569 3858..4141 +
1691683767.3523512-CDS-L-elsbetiae_contig6569:3857..41411691683767.3523512-CDS-L-elsbetiae_contig6569:3857..4141Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6569 3858..4141 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.136808-UTR-L-elsbetiae_contig6569:4141..42201622816725.136808-UTR-L-elsbetiae_contig6569:4141..4220Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6569 4142..4220 +
1691683767.3680675-UTR-L-elsbetiae_contig6569:4141..42201691683767.3680675-UTR-L-elsbetiae_contig6569:4141..4220Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6569 4142..4220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6569.15270.1

>prot_L-elsbetiae_contig6569.15270.1 ID=prot_L-elsbetiae_contig6569.15270.1|Name=mRNA_L-elsbetiae_contig6569.15270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=335bp
GSAAGPTAAAAAAGTRGPDPLQRSPGAPLQPGLRPGRGPLGGGAAGQGDG
GGAPAGAAGHGRRRRRRGVGVRPARLQAQGRPSRGGPQAAAQAERVDELG
GELEACGGQGDGDGDGGGGGGEGAGRGGPGYQQAVAAEGLRGADAGAGRL
GRGGAGGGGRQGVPEEALRRDRGERDGGDQAQLERKGQVPRHDKVEDQGE
DRRLGARLAALHEEVRQRCGAHGGPAVVARGDGQVQEPRAGDVRDGPADG
RSYPRARLRVAGQAPESRVHSLLNEPSNHRAIEPSSHRAVSQEQQGEGSQ
VVPRAKGRSSYTWRSERINQSSREVSFPILSYMT*
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mRNA from alignment at L-elsbetiae_contig6569:2527..4220+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6569.15270.1 ID=mRNA_L-elsbetiae_contig6569.15270.1|Name=mRNA_L-elsbetiae_contig6569.15270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1694bp|location=Sequence derived from alignment at L-elsbetiae_contig6569:2527..4220+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTCCGCCGCCGGGCCCACCGCTGCCGCCGCCGCCGCCGGAACAAGAGG
GCCTGACCCTCTCCAGCGTTCGCCCGGGGCACCGCTCCAGCCAGGTCTAC
GACCCGGACGCGGCCCTCTCGGTGGCGGCGCTGCTGGCCAAGGAGATGGA
GGAGGAGCGCCTGCTGGCGCTGCGGGGCACGGGCGGCGGCGCCGACGGCG
GGGTGTGGGCGTCCGCCCGGCACGCCTCCAGGCCCAAGGCCGGCCTTCGC
GTGGCGGCCCCCAAGCCGCTGCTCAAGCGGAGCGCGTCGATGAACTCGGT
GGTGAGCTCGAGGCTTGCGGAGGACAAGGCGACGGGGATGGGGACGGCGG
CGGCGGCGGCGGCGAAGGCGCCGGTCGCGGTGGACCCGGTTACCAACAGG
CGGTCGCTGCCGAGGGACTACGGGGGGCCGATGCTGGCGCCGGCCGCCTG
GGGCGGGGAGGAGCTGGTGGTGGTGGACGCCAAGGCGTCCCTGAGGAGGC
TCTACGACGCGATCGAGGGGAGAGGGATGGTGGCGATCAAGCGCAACTCG
AACGGAAAGGGCAGGTCCCGCGTCATGATAAGGTCGAGGATCAAGGAGAA
GACCGTCGGCTGGGCGCACGTCTTGCCGCCCTTCACGAGGAAGTTCGTCA
GCGTTGCGGAGCTCATGGGGGCCCAGCGGTCGTCGCGCGTGGTGACGGTC
AGGTTCAAGAACCGCGAGCCGGTACGCGGGTTTAAAATGCTTTTTGACGA
TACATACATACAGCAGTGTCTGGGTCGAGCTGAGGAGGCAGAGAGTAGTG
GAAGGAGGGCAAAAGTTTTTTTTTCGCTGAGGAGCCCCATCGTCGTGCTT
TCTTGTTTCCGTCTCTGGGCAGGGCGCGCGAGCTCTGTTGCCGTCCTAAG
ATTGATGTGGTTTCGATGCGCATTCGCAGATACCACACACATATGTACCA
TAATAGCTATTTATGTATGGGCGATGATGGGAGCCGCTGCGCGGGCTATA
TGTTATGTCTCCAAATGTATTTACTCATTCGTGCGTACACACATATGTGT
GACGGGACCCCGGTTGGGTCGTCTAGATAGTCGTAGTGGAGGGGGGGGGG
GGCAGTGGGGCAGACGACGAATAAGCCAATACTGGGAGGGGAAACAAAAA
ATTGTACTACTGTTTTGGTGCTTGCGTTCCACATGGTCGTTCATGCCATA
CATACATATGGGGCCACCCTATGCTCTGCGCTCCGCCACTTTTGTGTACC
TCACTTACCCCCATCCCTTCTGCTCCTTGCCCTGGCCTTGACCGCGTGTT
GCCGACCGACTGGTGTTCCTCATCCATCCAGGTGATGTTCGAGACGGACC
GGCTGACGGACGCTCTTATCCTCGAGCAAGGCTTCGTGTCGCTGGCCAAG
CTCCAGAAAGCCGAGTCCACTCGCTGTTGAACGAACCATCGAACCATCGA
GCCATCGAGCCATCGAGTCATCGAGCGGTGTCACAAGAGCAGCAAGGGGA
AGGGAGCCAGGTTGTGCCCCGAGCAAAGGGTCGGAGCAGCTACACTTGGC
GATCTGAGAGAATCAATCAATCATCCCGGGAGGTTTCCTTTCCTATCCTA
TCCTACATGACTTGATAGGAAAGGAGATCGGAAAGATGCTTGCTCTCTTT
GGCTGACAGGCCCGTGGCTCGGGGGCGGCTCTGCGATCTAGAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6569:2527..4220+

>mRNA_L-elsbetiae_contig6569.15270.1 ID=mRNA_L-elsbetiae_contig6569.15270.1|Name=mRNA_L-elsbetiae_contig6569.15270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2010bp|location=Sequence derived from alignment at L-elsbetiae_contig6569:2527..4220+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTCCGCCGCCGGGCCCACCGCTGCCGCCGCCGCCGCCGGAACAAGAGG
GCCTGACCCTCTCCAGCGTTCGCCCGGGGCACCGCTCCAGCCAGGTCTAC
GACCCGGACGCGGCCCTCTCGGTGGCGGCGCTGCTGGCCAAGGAGATGGA
GGAGGAGCGCCTGCTGGCGCTGCGGGGCACGGGCGGCGGCGCCGACGGCG
GGGTGTGGGCGTCCGCCCGGCACGCCTCCAGGCCCAAGGCCGGCCTTCGC
GTGGCGGCCCCCAAGCCGCTGCTCAAGCGGAGCGCGTCGATGAACTCGGT
GGTGAGCTCGAGGCTTGCGGAGGACAAGGCGACGGGGATGGGGACGGCGG
CGGCGGCGGCGGCGAAGGCGCCGGTCGCGGTGGACCCGGTTACCAACAGG
CGGTCGCTGCCGAGGGACTACGGGGGGCCGATGCTGGCGCCGGCCGCCTG
GGGCGGGGAGGAGCTGGTGGTGGTGGACGCCAAGGCGTCCCTGAGGAGGC
TCTACGACGCGATCGAGGGGAGAGGGATGGTGGCGATCAAGCGCAACTCG
AACGGAAAGGGCAGGTCCCGCGTCATGATAAGGTCGAGGATCAAGGAGAA
GACCGTCGGCTGGGCGCACGTCTTGCCGCCCTTCACGAGGAAGTTCGTCA
GCGTTGCGGAGCTCATGGGGGCCCAGCGGTCGTCGCGCGTGGTGACGGTC
AGGTTCAAGAACCGCGAGCCGGGGTCCGCCGCCGGGCCCACCGCTGCCGC
CGCCGCCGCCGGAACAAGAGGGCCTGACCCTCTCCAGCGTTCGCCCGGGG
CACCGCTCCAGCCAGGTCTACGACCCGGACGCGGCCCTCTCGGTGGCGGC
GCTGCTGGCCAAGGAGATGGAGGAGGAGCGCCTGCTGGCGCTGCGGGGCA
CGGGCGGCGGCGCCGACGGCGGGGTGTGGGCGTCCGCCCGGCACGCCTCC
AGGCCCAAGGCCGGCCTTCGCGTGGCGGCCCCCAAGCCGCTGCTCAAGCG
GAGCGCGTCGATGAACTCGGTGGTGAGCTCGAGGCTTGCGGAGGACAAGG
CGACGGGGATGGGGACGGCGGCGGCGGCGGCGGCGAAGGCGCCGGTCGCG
GTGGACCCGGTTACCAACAGGCGGTCGCTGCCGAGGGACTACGGGGGGCC
GATGCTGGCGCCGGCCGCCTGGGGCGGGGAGGAGCTGGTGGTGGTGGACG
CCAAGGCGTCCCTGAGGAGGCTCTACGACGCGATCGAGGGGAGAGGGATG
GTGGCGATCAAGCGCAACTCGAACGGAAAGGGCAGGTCCCGCGTCATGAT
AAGGTCGAGGATCAAGGAGAAGACCGTCGGCTGGGCGCACGTCTTGCCGC
CCTTCACGAGGAAGTTCGTCAGCGTTGCGGAGCTCATGGGGGCCCAGCGG
TCGTCGCGCGTGGTGACGGTCAGGTTCAAGAACCGCGAGCCGGTGATGTT
CGAGACGGACCGGCTGACGGACGCTCTTATCCTCGAGCAAGGCTTCGTGT
CGCTGGCCAAGCTCCAGAAAGCCGAGTCCACTCGCTGTTGAACGAACCAT
CGAACCATCGAGCCATCGAGCCATCGAGTCATCGAGCGGTGTCACAAGAG
CAGCAAGGGGAAGGGAGCCAGGTTGTGCCCCGAGCAAAGGGTCGGAGCAG
CTACACTTGGCGATCTGAGAGAATCAATCAATCATCCCGGGAGGTTTCCT
TTCCTATCCTATCCTACATGACTTGAGTGATGTTCGAGACGGACCGGCTG
ACGGACGCTCTTATCCTCGAGCAAGGCTTCGTGTCGCTGGCCAAGCTCCA
GAAAGCCGAGTCCACTCGCTGTTGAACGAACCATCGAACCATCGAGCCAT
CGAGCCATCGAGTCATCGAGCGGTGTCACAAGAGCAGCAAGGGGAAGGGA
GCCAGGTTGTGCCCCGAGCAAAGGGTCGGAGCAGCTACACTTGGCGATCT
GAGAGAATCAATCAATCATCCCGGGAGGTTTCCTTTCCTATCCTATCCTA
CATGACTTGA
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