mRNA_L-elsbetiae_contig6562.15264.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6562.15264.1
Unique NamemRNA_L-elsbetiae_contig6562.15264.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6562.15264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6562contigL-elsbetiae_contig6562:5801..9371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size364
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6562.15264.1prot_L-elsbetiae_contig6562.15264.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6562 5802..9371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816724.5407453-CDS-L-elsbetiae_contig6562:5801..59171622816724.5407453-CDS-L-elsbetiae_contig6562:5801..5917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6562 5802..5917 -
1691683766.9209638-CDS-L-elsbetiae_contig6562:5801..59171691683766.9209638-CDS-L-elsbetiae_contig6562:5801..5917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6562 5802..5917 -
1622816724.551428-CDS-L-elsbetiae_contig6562:7485..76621622816724.551428-CDS-L-elsbetiae_contig6562:7485..7662Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6562 7486..7662 -
1691683766.9324281-CDS-L-elsbetiae_contig6562:7485..76621691683766.9324281-CDS-L-elsbetiae_contig6562:7485..7662Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6562 7486..7662 -
1622816724.5639017-CDS-L-elsbetiae_contig6562:9301..93711622816724.5639017-CDS-L-elsbetiae_contig6562:9301..9371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6562 9302..9371 -
1691683766.941878-CDS-L-elsbetiae_contig6562:9301..93711691683766.941878-CDS-L-elsbetiae_contig6562:9301..9371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6562 9302..9371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6562.15264.1

>prot_L-elsbetiae_contig6562.15264.1 ID=prot_L-elsbetiae_contig6562.15264.1|Name=mRNA_L-elsbetiae_contig6562.15264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
ACWWWCLWAQAKSERQQREEATKARVRARGGRGERGGRGRGGKCTIAIIV
AGEFQPPPEQEGESPAPAAAAGERARETILGRCKVGQNEKRSRVDRWHQR
GRRGGRRDRGARRRRSSGRQR
back to top

mRNA from alignment at L-elsbetiae_contig6562:5801..9371-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6562.15264.1 ID=mRNA_L-elsbetiae_contig6562.15264.1|Name=mRNA_L-elsbetiae_contig6562.15264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3571bp|location=Sequence derived from alignment at L-elsbetiae_contig6562:5801..9371- (Laminarionema elsbetiae ELsaHSoW15)
GCGTGTTGGTGGTGGTGTTTGTGGGCCCAAGCCAAGAGCGAACGGCAGCA
GCGCGAGGAGGCGACAAAAGGTATGTATGTATGTACAAGAGCTTCGGTCG
CGGGAGCCTACCGCCCCCCCCCCCCGTCCTTCGGTTTCTGAAACTAGTTA
ATAGGGAGGGTTCGGTAATGTGTGGTTACCCAGGTTACCAAGGGTAATAT
TGGTGCGAGGAATAGGAACTGAGCGTGTAGTACACATACATACATACGTA
TGACTTTCTTTGTGACATCGAGGCGGAAAGTCGTCGCGTAATTGGTCGCG
AACTTGGTTTTGAAGCCGTCGTCCTCTTGCATGTATGAAATCGATCGTAG
AAAGCAGTCTCCCGAAGGAAGACTTGGTTGGGCTGACGTGACCCATGTAG
AAAAAATCTAGCAACTCACGACTCGTGGTCACACAAGTGCCGGAGCCATC
AAGATATCCTACTTTGTGAAGTTTGCGGTTGAGCTTGTAGAGAATTTCTA
GGCCTGGGTCTGCAGGTGGCAGGTTTGACGTTCGGTCGAAGAGTTCAAAC
ATTTGCATCAGTTTTCCAGTTTTCCAGAGTAAAAGTTAAAGTTCACCTGA
TGGCCTGCAGTTAGTTGTTACTTGAGGCATGTATGTATGCAGTTTCATTT
TCGAAAAGGTGCATGTTTGCATGTATTTGCTGAGGGTTTCCATAGTAACG
TCAGCTTTGAAGCGTAGCTCAGCGTTATTACTCACCTGGCCTGGACGCGT
CTAAAACGCGCTCATTGCTACTTGGAAGGTGTTGTTGTGCAGTGTGTGTG
TGCTTGAATTTCAAGTCCTACTCCTGGAACTCTGATGGAAGTTGCACCAA
ACTTCTCGAACTTTGATATTGTAGAAGTTCGGAGAAGTTCCTAGAGGTTG
CGGTTCAACTTGCGTTTCGGGTGGCAAAGTGGAGAATTTCCAATGCGAAG
TTCTGCAGTTGATTTTTCATGTCTGCAGGTCTATACTGATGAGGGTCAGT
TTTCAGCCGTAGTTCATGACCCGGACGCGTCTAAACTCGATCCCGCGGCA
ACGGGTCTGTGCTGGAAATACTTTTCTCGCTGACGCCGTGCAAGGGGAAG
TCGGGCTGTCCTGGCGCGTGGTCGCTGAGAGAGGCAACGCTCAACATACT
GATTTGAAAGAAAGGAAATTTTCCCCGCTTCGCTGAGAGTGAACGCTGAG
CTGAGTTGTGAGCGACCAGGATGTTAAGAGTCAGATTTTGTGAAACGGGT
CAAACGTCTGCGACAGACTGTAGGAAGTTTAACCCCCTTATAAGGGTGAC
CTCCACAATTTCGTGACATCAATTACCTCTGTGTATGCCTTGGTAAAATT
TCTTTGTATCGGTTTTTAGGCTGTTGTTGGCTTTATGTATCTACTACGGC
TGATGCTGACGTGCGCAAGCTCGTGGGGTGGCAAGTGTGTGTGTGTGTGT
GTGTGCGAGGCAGGGTAGAGAGCTTTGGGTCTGCCTGCGTGCTGAAGAAC
GGAACAGACACGCAATCGGAGGTTTCTACCCCCTCCTTAAGCAGATCATT
CCAGGGGGGATACTGTTGTATTCAGACGTTTAGACTAACCCCCCACTCTC
GCACATCTGCTGATTCTTGTCCTCAAATTTTGTACTCAGGCGGTGTAGAC
TAACCCCCCACTCGCACATTCGTTGATTCTTGTCCGCGAATGCCCTCCCA
TCCGCTCAGCACGCGTTCGAGCAAGAGGAGGAAGAGGAGAGCGAGGAGGA
CGAGGACGGGGAGGGAAGTGCACGATCGCCATCATTGTTGCCGGCGAATT
CCAGCCGCCACCGGAACAAGAGGGTGAGAGCCCGGCCCCAGCAGCAGCAG
CAGGGGAGAGGGCGAGGGAGACTATCCTCGGGCGCTGTGAGTATATATGC
TGAATGCATGCAGCTTCCGGCGGCGGGTTGTAGCATTGCGCTGCTGCTGC
TGCTGCTGCTGCTGCGCTGCGCTGCGCTGTACTGCGTTGTGGTGACGTCG
GGTGGGCCTACTGCTGTGCTAGCTGTCTCTATCTCTGCTCCTGCCGCTGC
TTATCGTGATTGGAGCTCACACTCCACCGCTACTGATTGGTCGCGCGGGT
AGTTTATTCCGGACCTGGTGGGATACTACACCATGTTTGTAGAGTCCTCG
GTGTGCGTTGTGGGAAAGAGCGAACGGGGAATCGTGCAAGGGCCTAGGTA
AATGCCGTTGTTGTTTTGTTGGTTCTGGCAGCGTTCGCTCCTTTGCTGCG
GGGGCGGGGGAGCTCCTGTTTTATGCCTTTTGATGGGCGTGGGCGGTGTT
TGTGCGTGGCATGGTGTTGCCCGCAGGCCGTCGGCTCTGCCTGACTTTCA
ACACCAGCCAGGCTGGTGACCCCACCCCCCCTTCGCCCGCCCTTTTTTGC
TCAAGCCCCCGATCCAACGTTAAAAACTGCAGTGGCCGATGTTGACCGTG
TGGTTGAGTTGCGCCGTTCCTGACGACGCGTTCATTGGACTGGCGACGCT
TGCTATTATCAATATTTTTATGTAATGGTTATACTTGTATAAACATGCGT
CATATTTTCACTGGATGGTATCCATTCTCGTACGCACTACTGTTTTAGGC
CAAATGTTATGGGAGCAGATTGGAATCCAGGATTCCAATCCGCTGGGGGC
ACGCAGACGAACTTTTTTTTTACTGAGAATCGCTCTTTTTTGCTCAGGGC
TCGCCTCCCAGACATCCGTTTGCAGCCTAACCAACAGGGGTGTGTGCTCC
AATGGTGTGACTGTCTCGGAGCCAAGTTTGGGGAGCAACGGTGAGGTGTG
GGCCTCACACGCTTTGAAACCCAAGAATTCCAAACTGGAATTTCGCGTTG
GAATCCGGGCGATTTTCCCAACAGGGAATACTCCGCGATTCCAATTTGGA
ATCCTTTGGTTTCAAAGCGGGTGAGGCCCACACCTCACCGTTGCTCCCCA
AACTTGGCTCCGAGACAGTCACGCCGTTGGAGTACACATCCCTGTTGGTT
AGGCTGCAAACGGGTGTCTGGGAGGCGAGCCCTGAGCAAAAAAGAGCGAT
TCTAACTTAATCTGCGTGCCCCCAGCGGATTGGAATCCTGGATTCCAATC
TGCTCCCATAACAATTGGCCTTACCAAGTTCGTCGCGAGCATCAAGTTTA
GCGGTGGCTGCGATCATAATCACGGTCGTTGATGGGATGGCTTCCATGAC
TGCTCCGGAAGTGGTACCTACGGATTACCGTGTCTTTATTTTTTTCCCGC
AAGCCCGGTGCTATTGCACTTTAAGAGTCACTGACCCCCCCCCCCGTGTC
TTATTTTTTTTTCCCGCAAGCCCGGTGCTATGTGCACTTTAAGAGTTACT
GATCCCCCCCCCCCCACCACCACCCCTCTCCGCGCGCGCGCTTGCCTTTT
TCGCCCCCTCTCGCGCCGGCCGCCGGCTTCTGCTCTATCGAACGAACGAC
ACAGGCAAAGTCGGCCAAAACGAGAAAAGGTCACGCGTTGATCGATGGCA
TCAGCGAGGGAGACGAGGAGGACGAAGGGATAGGGGGGCCCGACGGCGGA
GGAGCAGCGGAAGACAGCGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6562:5801..9371-

>mRNA_L-elsbetiae_contig6562.15264.1 ID=mRNA_L-elsbetiae_contig6562.15264.1|Name=mRNA_L-elsbetiae_contig6562.15264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig6562:5801..9371- (Laminarionema elsbetiae ELsaHSoW15)
GCGTGTTGGTGGTGGTGTTTGTGGGCCCAAGCCAAGAGCGAACGGCAGCA
GCGCGAGGAGGCGACAAAAGGCGTGTTGGTGGTGGTGTTTGTGGGCCCAA
GCCAAGAGCGAACGGCAGCAGCGCGAGGAGGCGACAAAAGCACGCGTTCG
AGCAAGAGGAGGAAGAGGAGAGCGAGGAGGACGAGGACGGGGAGGGAAGT
GCACGATCGCCATCATTGTTGCCGGCGAATTCCAGCCGCCACCGGAACAA
GAGGGTGAGAGCCCGGCCCCAGCAGCAGCAGCAGGGGAGAGGGCGAGGGA
GACTATCCTCGGGCGCTCACGCGTTCGAGCAAGAGGAGGAAGAGGAGAGC
GAGGAGGACGAGGACGGGGAGGGAAGTGCACGATCGCCATCATTGTTGCC
GGCGAATTCCAGCCGCCACCGGAACAAGAGGGTGAGAGCCCGGCCCCAGC
AGCAGCAGCAGGGGAGAGGGCGAGGGAGACTATCCTCGGGCGCTGCAAAG
TCGGCCAAAACGAGAAAAGGTCACGCGTTGATCGATGGCATCAGCGAGGG
AGACGAGGAGGACGAAGGGATAGGGGGGCCCGACGGCGGAGGAGCAGCGG
AAGACAGCGGGCAAAGTCGGCCAAAACGAGAAAAGGTCACGCGTTGATCG
ATGGCATCAGCGAGGGAGACGAGGAGGACGAAGGGATAGGGGGGCCCGAC
GGCGGAGGAGCAGCGGAAGACAGCGG
back to top