mRNA_L-elsbetiae_contig6561.15262.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6561.15262.1
Unique NamemRNA_L-elsbetiae_contig6561.15262.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6561.15262.1 vs. uniprot
Match: D8LT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT55_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 3.780e-20
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 2 
Query:    2 RRGRWIIEEEDFARACIDAFSSGSLSQVAEGTTLRAFLSERLQCQPM 142
            RRGRWI+EEEDFARACI+AFSSG L++V +GTTLRAFL+ RL CQPM
Sbjct:    9 RRGRWIVEEEDFARACINAFSSGMLAEVEDGTTLRAFLASRLHCQPM 55
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BLAST of mRNA_L-elsbetiae_contig6561.15262.1 vs. uniprot
Match: A0A6H5JS48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS48_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.900e-16
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    2 RRGRWIIEEEDFARACIDAFSSGSLSQVAEGTTLRAFLSERLQCQPM 142
            RRGRWI+EEE+FARACI+AFS G L+ V +GTTLRAFL+ RL CQPM
Sbjct:    9 RRGRWIVEEEEFARACINAFSCGMLADVEDGTTLRAFLASRLHCQPM 55
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BLAST of mRNA_L-elsbetiae_contig6561.15262.1 vs. uniprot
Match: A0A7S2FDS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FDS7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.140e-10
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 2 
Query:    2 RRGRWIIEEEDFARACIDAFSSGSLSQVAEGTTLRAFLSERLQCQPM 142
            RRG+W  EEE + R  ID FSSG L+ VA GTTLR++LSE+L C PM
Sbjct:   55 RRGKWTTEEESYVRKIIDDFSSGMLA-VAAGTTLRSYLSEKLNCDPM 100
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BLAST of mRNA_L-elsbetiae_contig6561.15262.1 vs. uniprot
Match: B8C0B1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0B1_THAPS)

HSP 1 Score: 57.4 bits (137), Expect = 2.330e-8
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 2 
Query:    2 RRGRWIIEEEDFARACIDAFSSGSLSQVAEGTTLRAFLSERLQCQPM 142
            R+GRWI EEED+A+  I  F +G    V  GTTLRA+LS+RL C PM
Sbjct:   79 RKGRWISEEEDYAKFLIYEFENGLSKGVEHGTTLRAYLSKRLVCAPM 125
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BLAST of mRNA_L-elsbetiae_contig6561.15262.1 vs. uniprot
Match: A0A6S8SZL3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8SZL3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.190e-8
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 2 
Query:    2 RRGRWIIEEEDFARACIDAFSSGSLSQVAEGTTLRAFLSERLQCQPM 142
            RRG+W+ +EE +A++ IDAF  G ++    G TLRA+LS +L CQPM
Sbjct:  180 RRGKWMPDEERYAKSLIDAFEKGIINGCENGCTLRAYLSRKLHCQPM 226
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BLAST of mRNA_L-elsbetiae_contig6561.15262.1 vs. uniprot
Match: A0A7S1UEV5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEV5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.860e-8
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 2 
Query:    2 RRGRWIIEEEDFARACIDAFSSGSLSQVAEGTTLRAFLSERLQCQPM 142
            RRG+W  EEE++A+  I+ F  G+L     GTTLR +LS +L C PM
Sbjct:  141 RRGKWTTEEENYAQMLIECFKDGTLPDAENGTTLRCYLSRKLNCAPM 187
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BLAST of mRNA_L-elsbetiae_contig6561.15262.1 vs. uniprot
Match: A0A835Z4F5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4F5_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 9.880e-8
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 2 
Query:    2 RRGRWIIEEEDFARACIDAFSSGSLSQVAEGTTLRAFLSERLQCQPM 142
            RRG+W  EEE +    I  F++G L Q+ EGTTLRA+L+++LQC PM
Sbjct:    2 RRGKWSSEEEAYTERIIHYFNTGVL-QLPEGTTLRAYLAKKLQCDPM 47
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BLAST of mRNA_L-elsbetiae_contig6561.15262.1 vs. uniprot
Match: B8CEW8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEW8_THAPS)

HSP 1 Score: 55.5 bits (132), Expect = 1.120e-7
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 2 
Query:    2 RRGRWIIEEEDFARACIDAFSSGSLSQVAEGTTLRAFLSERLQCQPM 142
            R+G+W +EEE+F    I  FSSG L  + EG TLR +LSE+LQC PM
Sbjct:  141 RKGKWTVEEEEFTTRVIHYFSSG-LMTLPEGKTLRGYLSEKLQCDPM 186
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BLAST of mRNA_L-elsbetiae_contig6561.15262.1 vs. uniprot
Match: B7FR00_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FR00_PHATC)

HSP 1 Score: 55.1 bits (131), Expect = 1.520e-7
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 2 
Query:    2 RRGRWIIEEEDFARACIDAFSSGSLSQVAEGTTLRAFLSERLQCQPM 142
            RRG+W +EEE +    I  F+SG L   A GTTLR FLSE+LQC PM
Sbjct:  227 RRGKWTVEEEAYVARVIQDFNSGFLDAPA-GTTLRTFLSEKLQCDPM 272
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BLAST of mRNA_L-elsbetiae_contig6561.15262.1 vs. uniprot
Match: B7FPB1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPB1_PHATC)

HSP 1 Score: 55.1 bits (131), Expect = 1.520e-7
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 2 
Query:    2 RRGRWIIEEEDFARACIDAFSSGSLSQVAEGTTLRAFLSERLQCQPM 142
            R G+WI EEE +A   ID F  G +     GTTLRAFL ++L C PM
Sbjct:  103 RSGKWISEEETYADVLIDLFQKGRIKDCENGTTLRAFLGQKLHCAPM 149
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6561.15262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT55_ECTSI3.780e-2078.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS48_9PHAE5.900e-1674.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2FDS7_9STRA1.140e-1061.70Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
B8C0B1_THAPS2.330e-857.45Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A6S8SZL3_9STRA3.190e-851.06Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1UEV5_9STRA5.860e-848.94Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835Z4F5_9STRA9.880e-853.19Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
B8CEW8_THAPS1.120e-755.32Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
B7FR00_PHATC1.520e-757.45Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
B7FPB1_PHATC1.520e-751.06Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6561contigL-elsbetiae_contig6561:185..829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size147
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816724.363801-CDS-L-elsbetiae_contig6561:185..3101622816724.363801-CDS-L-elsbetiae_contig6561:185..310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6561 186..310 -
1691683766.7988067-CDS-L-elsbetiae_contig6561:185..3101691683766.7988067-CDS-L-elsbetiae_contig6561:185..310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6561 186..310 -
1622816724.3754363-CDS-L-elsbetiae_contig6561:810..8291622816724.3754363-CDS-L-elsbetiae_contig6561:810..829Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6561 811..829 -
1691683766.8083334-CDS-L-elsbetiae_contig6561:810..8291691683766.8083334-CDS-L-elsbetiae_contig6561:810..829Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6561 811..829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6561.15262.1prot_L-elsbetiae_contig6561.15262.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6561 186..829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6561.15262.1

>prot_L-elsbetiae_contig6561.15262.1 ID=prot_L-elsbetiae_contig6561.15262.1|Name=mRNA_L-elsbetiae_contig6561.15262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=48bp
TARAVDNRGGGLRPRLHRCLQLGLALSGRGGHNFASVSLRAAAVPAHA
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mRNA from alignment at L-elsbetiae_contig6561:185..829-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6561.15262.1 ID=mRNA_L-elsbetiae_contig6561.15262.1|Name=mRNA_L-elsbetiae_contig6561.15262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=645bp|location=Sequence derived from alignment at L-elsbetiae_contig6561:185..829- (Laminarionema elsbetiae ELsaHSoW15)
ACGGCGCGGGCGGTGGATAGTGAGTGTCATTTCGGCTCGCTTTTGTTCGC
GTGCAACTGCATGCTGTGGGCGATGTGTTCCGAACGCTACTCCCCCTTCA
ACTCGCTCCTGTTGTATCTAGAGCTTGTTTGTAGGAAAAATGCACAGGAA
CAAAGAGGTGGCTTCCAAAACATATTCGTGCACACAAGTCGCAATTTTGA
GCCCACAGAGCCAGTCAGTCGCTACAGAGTCCGTGCTGCAAGAATGCTCG
CTGCTGCTGCTGTGGGCCGCGTGTGTACGCTGCTTTTTCCTTTCTTGTTT
TTGGATGATGGTGGTCCGCTGTCAACTCCCTCTCTCTCTACTGGACTTCA
ACGAGAGGAGGATCGTCTTTAGAAAACTGCGATATGTACAAATTATGAAG
GTATGCCCTTTGCAGCGCCGCTCGATCAACCTTGATTCATCATCGCTAAC
CCCTATCGTGCTCGATATGTATCAAGACTTTTGAATCTATAGACTAAATT
GTTTTTTGTTGCCCTTCAGATCGAGGAGGAGGACTTCGCCCGCGCCTGCA
TAGATGCCTTCAGCTCGGGCTCGCTCTCTCAGGTCGCGGAGGGCACAACT
TTGCGAGCGTTTCTCTCCGAGCGGCTGCAGTGCCAGCCCATGCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6561:185..829-

>mRNA_L-elsbetiae_contig6561.15262.1 ID=mRNA_L-elsbetiae_contig6561.15262.1|Name=mRNA_L-elsbetiae_contig6561.15262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=288bp|location=Sequence derived from alignment at L-elsbetiae_contig6561:185..829- (Laminarionema elsbetiae ELsaHSoW15)
ACGGCGCGGGCGGTGGATAACGGCGCGGGCGGTGGATAATCGAGGAGGAG
GACTTCGCCCGCGCCTGCATAGATGCCTTCAGCTCGGGCTCGCTCTCTCA
GGTCGCGGAGGGCACAACTTTGCGAGCGTTTCTCTCCGAGCGGCTGCAGT
GCCAGCCCATGCGATCGAGGAGGAGGACTTCGCCCGCGCCTGCATAGATG
CCTTCAGCTCGGGCTCGCTCTCTCAGGTCGCGGAGGGCACAACTTTGCGA
GCGTTTCTCTCCGAGCGGCTGCAGTGCCAGCCCATGCG
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