mRNA_L-elsbetiae_contig656.15256.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig656.15256.1
Unique NamemRNA_L-elsbetiae_contig656.15256.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig656.15256.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 4.900e-38
Identity = 88/119 (73.95%), Postives = 96/119 (80.67%), Query Frame = 1 
Query:  112 DVIRVVLREVEVHAWPPNWRHEVQCPGVRVTVIDDMEGRDMPLLRAEVGSLDMTHESGPGMARYSSSAGARASLQH---ATSAGSTTGG----SAGGVAGLEGAITVPVSRTAAACDAQ 447
            DVIR+VLREVEVHAWPPNWRHEVQCPGVRVTVIDD+EGRDMPLLRAEVGSLDMTHESGPGMAR+S+    RASL     AT+AG T+      +AGGV      + VPVSRTAAACDAQ
Sbjct: 4068 DVIRLVLREVEVHAWPPNWRHEVQCPGVRVTVIDDLEGRDMPLLRAEVGSLDMTHESGPGMARHSAGD-KRASLGKSILATTAGGTSAXXXXRTAGGVD--TALLVVPVSRTAAACDAQ 4183
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BLAST of mRNA_L-elsbetiae_contig656.15256.1 vs. uniprot
Match: D7FMF6_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF6_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 7.870e-16
Identity = 49/77 (63.64%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:  448 VDYYNATGGRWEPLLERVVAQGDREIANRRPPPLLGGPATRTLGGKVVEAGGFEEEREDDGETCSVVRLSCFEEDVK 678
            VDYYNATGGRWEPLLERVVAQGDR I  RR    +      T+ G V   GG  EE     E+CSVVRLSCFEEDVK
Sbjct:    2 VDYYNATGGRWEPLLERVVAQGDRAIVTRR---RVAAQDPNTVTGVV--GGGQGEEGXXXXESCSVVRLSCFEEDVK 73
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig656.15256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMF5_ECTSI4.900e-3873.95FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FMF6_ECTSI7.870e-1663.64SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig656contigL-elsbetiae_contig656:16426..18827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.9
Seed ortholog evalue1.8e-34
Seed eggNOG ortholog2880.D7FMF5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000560.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size703
Cds size702
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig656.15256.1prot_L-elsbetiae_contig656.15256.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig656 16426..18827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816724.0197363-CDS-L-elsbetiae_contig656:16425..166021622816724.0197363-CDS-L-elsbetiae_contig656:16425..16602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 16426..16602 +
1691683766.5595407-CDS-L-elsbetiae_contig656:16425..166021691683766.5595407-CDS-L-elsbetiae_contig656:16425..16602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 16426..16602 +
1622816724.032626-CDS-L-elsbetiae_contig656:17457..175791622816724.032626-CDS-L-elsbetiae_contig656:17457..17579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 17458..17579 +
1691683766.5737374-CDS-L-elsbetiae_contig656:17457..175791691683766.5737374-CDS-L-elsbetiae_contig656:17457..17579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 17458..17579 +
1622816724.0429285-CDS-L-elsbetiae_contig656:17897..180451622816724.0429285-CDS-L-elsbetiae_contig656:17897..18045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 17898..18045 +
1691683766.583194-CDS-L-elsbetiae_contig656:17897..180451691683766.583194-CDS-L-elsbetiae_contig656:17897..18045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 17898..18045 +
1622816724.053012-CDS-L-elsbetiae_contig656:18572..188271622816724.053012-CDS-L-elsbetiae_contig656:18572..18827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 18573..18827 +
1691683766.5930245-CDS-L-elsbetiae_contig656:18572..188271691683766.5930245-CDS-L-elsbetiae_contig656:18572..18827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 18573..18827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig656.15256.1

>prot_L-elsbetiae_contig656.15256.1 ID=prot_L-elsbetiae_contig656.15256.1|Name=mRNA_L-elsbetiae_contig656.15256.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=234bp
RRQRHQLLLSSGGGRGKRSGAGRSSGGRGGGGGGGPRDVIRVVLREVEVH
AWPPNWRHEVQCPGVRVTVIDDMEGRDMPLLRAEVGSLDMTHESGPGMAR
YSSSAGARASLQHATSAGSTTGGSAGGVAGLEGAITVPVSRTAAACDAQV
DYYNATGGRWEPLLERVVAQGDREIANRRPPPLLGGPATRTLGGKVVEAG
GFEEEREDDGETCSVVRLSCFEEDVKVGGPSPG*
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mRNA from alignment at L-elsbetiae_contig656:16426..18827+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig656.15256.1 ID=mRNA_L-elsbetiae_contig656.15256.1|Name=mRNA_L-elsbetiae_contig656.15256.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2402bp|location=Sequence derived from alignment at L-elsbetiae_contig656:16426..18827+ (Laminarionema elsbetiae ELsaHSoW15)
CGACGCCAGCGGCACCAGCTGCTGCTGTCGAGCGGTGGTGGGCGTGGGAA
GAGAAGCGGGGCCGGGCGGAGCAGCGGTGGCCGCGGCGGGGGCGGCGGAG
GCGGCCCCCGGGATGTGATTCGGGTGGTGCTGAGGGAGGTGGAGGTGCAC
GCTTGGCCCCCCAACTGGCGGCACGAGGTACTGCTGTAAGGGAATTGTTT
GTTTTCCCCTTTATTTTCAGATGTGTTTTGTCCAATGTCGTGACAACCAC
AATTACCGCCGCTGGGGCTTTGTGCCCCGGCCTACCCCTACGCCGTACTG
ACTGCCGTATTTTCCTGAATGGAAGCCCCGGGGAATTTCTATCTGCGGTC
AGTTGGCACCCCGAACCGCCTCTGCGGGTTGCTACCCACGACTTCGCATA
GTAATGGTGTTGCGTGGCTTGTTTGCTTCTCAAAACAGTTGTGTTCGGGA
AGAAAACCGCGGATGCCGTTTGTGACCCCTGCCCCCCTTTGCGTGTCGCA
TGCACACCCCTCTCACCTGTCGCGGGGAATCCGTGATGTCTGGCCGTCTG
GTGCTGGGTACGGGGGGGGGGGGGGATTCCGTTGTCTTTAGTTTGTGTTA
CTTTTCGGGCGTCCCCATTCTTCTGCCCTGATTTTTTTAAGCCGGAATGA
AGCGGCAATCACCGCAACGGCTCGTTTGCGGCGAGGAAACCCAAAAAATG
TTTTCCAGTGCGAGGTAAAGGAGCCACTACCGTCTCCCTTCCTTTCTTTC
CGTCCATGCTTGTTATTTTACTTCGAAGAGGATCTTGTTCGGCGTCCTTC
AGAGTATCAGTATCGACGCCAATGTTTTGATAGTCGGGAACCTACCTGCG
TACGTACGCGTCAACCGCGATCGTCTAGTCTGCCAGCGCGTCGTTTTCAC
CCCGCGGATAGGAACGAGAGACCCCCCCCCCCCGGAAGAGTTAATTTTGA
ATCCCATTGAGCGTCATGCTCCTTCAGTACCAGTGTTTGATAGTAGTCCG
GAAACTGCCTGCTTACGTACGTACGCGCGCAGGTCCAGTGTCCCGGTGTG
AGGGTGACCGTGATCGACGACATGGAGGGTAGGGACATGCCGCTCTTGAG
GGCTGAGGTCGGGAGCCTCGACATGACACACGAGAGCGGGCCGGGAATGG
CGAGGTGTGTTGGTGTCCGACAGTCCCGCTGACAGTCCCGTTGTTGTCGT
TGGTGGTGGGTGGTGGTCGCGGTAGTGGTCGTCATTGTGGGTGTTGTTAT
TGTTGTTGTTGCTGTTGCTGTTGTTGATGTTGATGTTGTTGCTGTTATTG
CTACTGTTGTTGCTGTTTGCCTTTGGTTGTTGTTGTTGTCGTCGTCCCGC
TATCGCTCGTCCCACAACTCATTGGATTTTTTTACTGTCGATTTTAAGCC
GTGTCGACCGAACTGTTTGCCTTGACGTTGATTTCAACTGCTGATTTCGA
CTCTTGTCCTCGCAACGCAAAGGTACAGCAGCAGCGCCGGCGCGCGCGCC
TCTCTGCAGCACGCCACCTCGGCTGGTTCTACGACCGGCGGCAGCGCCGG
TGGCGTCGCGGGGCTGGAGGGTGCAATCACGGTTCCCGTCAGCCGCACGG
CTGCGGCGTGCGATGCCCAGGTCGGTTCGGGGGTGGTTCGTGTGTGTGTT
AGGTGTAAGGTGTATGTGTATCTACGGGGGTAAGTGTATGGATGTAAGTG
TAGGTGTAGTGTGTGTGTGTGTGTGTGTTTGTTGTTGGGGTACAGTATGT
GATCATGTGCGCGCGTGTGTGGTTCTTTTGATTCACGAAGCTCAAGTCTG
TCTGTCTGTCTGTCTGGCTGGCTGGCTGGCTGCTAAGACTTACCCGCTTG
ATGATATGTGCCTCTCTCGCAGCGTGATTGTAGCTTGAGATCATACACCG
GTACTGGAATCGACGTGGGTTCGGAAAATATCTCGATCTTTCATTATTCG
TGGGTTCTAAAGGGTATGTAGGTATACACACCAATGTCTGCGAGGGTGGA
GGCAAAACCTCAACATGTTCTTGCTCTTCTTCCTCTTCTACTAGAGAACC
GACCGATTGTTATCCGGTCGGGGTGCAAGCCGCTCACGCCCGAAACCAAA
ATCGTTTTTGCACACCAACCAAACATGGGGGGGGGGGGGGGCTGCAGGTG
GACTACTATAACGCCACGGGGGGGAGGTGGGAGCCGCTGCTCGAGCGCGT
CGTGGCCCAGGGGGACAGGGAAATCGCCAATCGCCGCCCTCCCCCCTTGC
TTGGGGGCCCCGCGACCCGCACCCTCGGCGGCAAGGTGGTGGAGGCCGGG
GGCTTCGAGGAGGAACGAGAGGACGACGGGGAGACTTGCTCAGTGGTGCG
GCTGTCGTGCTTCGAGGAGGACGTGAAGGTGGGGGGCCCGTCTCCTGGTT
GA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig656:16426..18827+

>mRNA_L-elsbetiae_contig656.15256.1 ID=mRNA_L-elsbetiae_contig656.15256.1|Name=mRNA_L-elsbetiae_contig656.15256.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1404bp|location=Sequence derived from alignment at L-elsbetiae_contig656:16426..18827+ (Laminarionema elsbetiae ELsaHSoW15)
CGACGCCAGCGGCACCAGCTGCTGCTGTCGAGCGGTGGTGGGCGTGGGAA
GAGAAGCGGGGCCGGGCGGAGCAGCGGTGGCCGCGGCGGGGGCGGCGGAG
GCGGCCCCCGGGATGTGATTCGGGTGGTGCTGAGGGAGGTGGAGGTGCAC
GCTTGGCCCCCCAACTGGCGGCACGAGCGACGCCAGCGGCACCAGCTGCT
GCTGTCGAGCGGTGGTGGGCGTGGGAAGAGAAGCGGGGCCGGGCGGAGCA
GCGGTGGCCGCGGCGGGGGCGGCGGAGGCGGCCCCCGGGATGTGATTCGG
GTGGTGCTGAGGGAGGTGGAGGTGCACGCTTGGCCCCCCAACTGGCGGCA
CGAGGTCCAGTGTCCCGGTGTGAGGGTGACCGTGATCGACGACATGGAGG
GTAGGGACATGCCGCTCTTGAGGGCTGAGGTCGGGAGCCTCGACATGACA
CACGAGAGCGGGCCGGGAATGGCGAGGTCCAGTGTCCCGGTGTGAGGGTG
ACCGTGATCGACGACATGGAGGGTAGGGACATGCCGCTCTTGAGGGCTGA
GGTCGGGAGCCTCGACATGACACACGAGAGCGGGCCGGGAATGGCGAGGT
ACAGCAGCAGCGCCGGCGCGCGCGCCTCTCTGCAGCACGCCACCTCGGCT
GGTTCTACGACCGGCGGCAGCGCCGGTGGCGTCGCGGGGCTGGAGGGTGC
AATCACGGTTCCCGTCAGCCGCACGGCTGCGGCGTGCGATGCCCAGGTAC
AGCAGCAGCGCCGGCGCGCGCGCCTCTCTGCAGCACGCCACCTCGGCTGG
TTCTACGACCGGCGGCAGCGCCGGTGGCGTCGCGGGGCTGGAGGGTGCAA
TCACGGTTCCCGTCAGCCGCACGGCTGCGGCGTGCGATGCCCAGGTGGAC
TACTATAACGCCACGGGGGGGAGGTGGGAGCCGCTGCTCGAGCGCGTCGT
GGCCCAGGGGGACAGGGAAATCGCCAATCGCCGCCCTCCCCCCTTGCTTG
GGGGCCCCGCGACCCGCACCCTCGGCGGCAAGGTGGTGGAGGCCGGGGGC
TTCGAGGAGGAACGAGAGGACGACGGGGAGACTTGCTCAGTGGTGCGGCT
GTCGTGCTTCGAGGAGGACGTGAAGGTGGGGGGCCCGTCTCCTGGTTGAG
TGGACTACTATAACGCCACGGGGGGGAGGTGGGAGCCGCTGCTCGAGCGC
GTCGTGGCCCAGGGGGACAGGGAAATCGCCAATCGCCGCCCTCCCCCCTT
GCTTGGGGGCCCCGCGACCCGCACCCTCGGCGGCAAGGTGGTGGAGGCCG
GGGGCTTCGAGGAGGAACGAGAGGACGACGGGGAGACTTGCTCAGTGGTG
CGGCTGTCGTGCTTCGAGGAGGACGTGAAGGTGGGGGGCCCGTCTCCTGG
TTGA
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