mRNA_L-elsbetiae_contig656.15255.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig656.15255.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE) HSP 1 Score: 476 bits (1226), Expect = 7.610e-148 Identity = 314/583 (53.86%), Postives = 356/583 (61.06%), Query Frame = 1
Query: 1 LEAAVGAVSLVDLSKGAAFPRLVSPA-PAPVSGDARPPQVVLSYHFSPNTEAQVQVMVNHLEAIVAPSAIHKLIALAKPPKVPPPP-PALRWKAG--------------------DGKGSTPEKAKGQAAANGS--AAAVAAGMHDLAALQLAEEGGIE-----------EDGRLPKSPLTLKVTLLDPVLMLPQDDRDSDSKALFLKGLVMANYVRSGGGDSGKD-------GPAAEARETSLEIIRLESQIGRMFGGSGRGHDTTSGVSTSLGGLGAGAGAIDPVTLSLHYSEVERPLHPMVKDLKCQVEEVVCQLTYQDMALFNAVLSGWSSGVM--------------------------PAQSAHADP------AXXXXXXXTAVRKG--------DDYPDAS----------LRGATALELDXXXXXXXXXXXDGQPLRVQQAGRFYEVVFESAQLGIVLFRQ------------------------------VAGIPTSQLSYNGVVDRIRASPRPITLRFRRALYQCWWGREYTLDLPSEWDGHRLGGVLLVGGGAGDQAVVGSADGFRPRKQFL 1383
LEA+V AVSL+DLS G AF R++SPA P PVSG+ RPPQVV+SYHFSP TEAQVQVMVNHLE + PSAIHKL LAK + PPPP P WK G +G G+T + AA G AAA A MHDLAALQL +EG EDG PK+PLTLK TLL+PVL+LPQDD+D D ALFL+GL++ANYVRS D+ G A EAR+TSLEIIRLESQ+GRMFGGSGR G ST GGLG GAGA DPVTLSLHYSEVERPLHPMVKDLKCQVEEV CQLTYQDM+LFNAVLSGWSSG++ P +A P + A+R G +D DA L GA+AL+L+ G+ + Q GRFYEVVFE+AQLGIVL RQ VAG+PTS LSY+GVVDRIRASPRPI+LRFRRAL++ WWGREYTLDL S WDGHRL G+LLVGGGAGDQAVVGS DGFRPRK+ L
Sbjct: 2957 LEASVDAVSLLDLSPGTAFSRILSPAAPIPVSGEMRPPQVVISYHFSPKTEAQVQVMVNHLETVAVPSAIHKLRVLAK--RTPPPPTPMYGWKPGGERDPSPVGPPNSGGLGTPGEGVGTTEGSVEETRAATGGLGAAAEAECMHDLAALQLTQEGVTPPPPIISDTIRGEDGA-PKTPLTLKATLLNPVLILPQDDKDPDCNALFLQGLIIANYVRSPRNDTAFQQHSNSARGAAVEARDTSLEIIRLESQLGRMFGGSGR----APGASTP-GGLGGGAGAFDPVTLSLHYSEVERPLHPMVKDLKCQVEEVECQLTYQDMSLFNAVLSGWSSGLLSQTVDETADAVTGDTTAAAVVDAAVSPLAAAATSPFVRNSSSKNGHEDVDALRLGIGMPPQHANDSADAXXXXXXXXXXXLMGASALDLEDEEEG-------GEQI---QDGRFYEVVFETAQLGIVLLRQNGVAVVEEVSSYNGVGGRAAGPFPGDELTEVAGMPTSCLSYDGVVDRIRASPRPISLRFRRALFRSWWGREYTLDLSS-WDGHRLDGILLVGGGAGDQAVVGSVDGFRPRKRRL 3520
BLAST of mRNA_L-elsbetiae_contig656.15255.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI) HSP 1 Score: 302 bits (773), Expect = 2.870e-87 Identity = 188/297 (63.30%), Postives = 207/297 (69.70%), Query Frame = 1
Query: 1 LEAAVGAVSLVDLSKGAAFPRLVSPA-PAPVSGDARPPQVVLSYHFSPNTEAQVQVMVNHLEAIVAPSAIHKLIALAKPPKVPPPPPALRWKAGDGKGSTP-------------------EKAKGQAAANGS--AAAVAAGMHDLAALQLAEEGGIEEDGRLPKSPLTLKVTLLDPVLMLPQDDRDSDSKALFLKGLVMANYVRSGGGDSGKD-------GPAAEARETSLEIIRLESQIGRMFGGSGRGHDTTSGVSTSLGGLGAGAGAIDPVTLSLHYSEVERPLHPMVKDLKCQ 804
LE +VGAV L+DLS G AF R+VSPA P PVSG+ RPPQVV+SYHFSP TEAQVQVMVNHLE I PSAIHKL LAKP PPP P WK GD + +P K AA G AAA A MHDLAALQL ++GG EDG PK+PLTLK TLL+PVL+LPQDD+D D ALFL+GL++ANYVRS D+ G AAEAR+TSLEIIRLESQ+GRMFGGSGR G ST G LGAGAGAIDPVTLSLHYSEVERPLHPMVKDLKCQ
Sbjct: 3655 LEGSVGAVLLLDLSPGTAFSRIVSPAAPVPVSGEMRPPQVVISYHFSPKTEAQVQVMVNHLETIAVPSAIHKLHVLAKPTP-PPPTPMYGWKPGDERDPSPVGPPHSSGLGTPGEGVGTERNVKETRAATGGLGAAAEAECMHDLAALQLTQQGG--EDGA-PKTPLTLKATLLNPVLILPQDDKDPDCNALFLQGLIIANYVRSPRNDTAFQQHSNSARGAAAEARDTSLEIIRLESQVGRMFGGSGR----APGASTPSG-LGAGAGAIDPVTLSLHYSEVERPLHPMVKDLKCQ 3942
BLAST of mRNA_L-elsbetiae_contig656.15255.1 vs. uniprot
Match: D7FHV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV4_ECTSI) HSP 1 Score: 177 bits (450), Expect = 1.770e-50 Identity = 88/106 (83.02%), Postives = 96/106 (90.57%), Query Frame = 1
Query: 1066 QAGRFYEVVFESAQLGIVLFRQVAGIPTSQLSYNGVVDRIRASPRPITLRFRRALYQCWWGREYTLDLPSEWDGHRLGGVLLVGGGAGDQAVVGSADGFRPRKQFL 1383
Q GRFYEVVFE+AQLGIVL RQVAG+PTS LSY+GVVDRIRASP PI+LRFRRAL++ WWGREYTLDL S WDGHRL G+LLVGGGAGDQAVVGS DGFRPRK+ L
Sbjct: 49 QDGRFYEVVFETAQLGIVLLRQVAGMPTSCLSYDGVVDRIRASPCPISLRFRRALFKSWWGREYTLDL-SYWDGHRLDGILLVGGGAGDQAVVGSVDGFRPRKRRL 153
BLAST of mRNA_L-elsbetiae_contig656.15255.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA) HSP 1 Score: 129 bits (324), Expect = 3.930e-28 Identity = 155/543 (28.55%), Postives = 214/543 (39.41%), Query Frame = 1
Query: 1 LEAAVGAVSLVDLSKGAAFPRLVSPAPAPVSGDARP------------PQVVLSYHFSPNTEAQVQVMVNHLEAIVAPSAIHKL-IALAKPPKVPPPPPALRWKAGDGKGSTPEKAKGQAAANGSAAAVAAGMHDLAALQLAEE-----GGIEEDGRLPKSPLTLKVTLLDPVLMLPQDDRDSDSKALFLKGLVMANYVRSGGGDSGKDGPAAEARETSLEII----------RLESQIGRMFGGSGRGHDTTSGVSTSLGGLGAGAGAIDPVTLSLHYSEVERPLHPMVKDLKCQVEEVVCQLTYQDMALFNAVLSGWSSGVMPAQSAHADPAXXXXXXXTAVRKGDDYPDASLRGATALELDXXXXXXXXXXXDGQPLRVQQAGRFYEVVFESAQLGIVLFR---------------------------------QVAG------------IPTSQLSYNGVVDRIRASP---------------RPITLRFRRALYQCWWGREYTLDLPSEWDGHRLGGVLLVGGGAGDQAVVGSADGFR 1365
LE ++ L D G P + P P S D PQ+ S HF+ ++++Q+M+NH+EA++A A+ ++ ALA P P G+G P Q MHDLA LQLA + GG PLT+KVTL +P L+L ++RD + AL L+GL++ Y RS +DG A +T L++ RLES I M GG G DT G G G +DPVT+SL S + RPLHP + CQVE V Q +Y D+++ + VL GWS A +A A A A G D DA L Y V+F S +LGI + R +VAG + S L Y V+ +R+ P RP+ L FRRA Y+ G + + + +G L G+ GG GDQ VV S+ +R
Sbjct: 3005 LELSLRTFCLRDPRPGCVHPNIAIPKPELDSQDGEDSGXXXXXXXXXAPQLACSLHFNAQ-QSRMQIMLNHMEAMIAFGALREMRAALAVPAPAAP-----------GRGGPPGTTMAQPH-----------MHDLAPLQLASDCDFVAGGGXXXXXXXALPLTVKVTLNNPRLLLLGEERDPHTHALVLQGLIIGRYTRSAA--LLEDGEVAVTSKTRLQVXXXXXXXXRVHRLESYIHAM-GGDG---DT-----------GTGVGILDPVTVSLDSSLMRRPLHPDEHHVTCQVEGVDAQFSYADLSVLSKVLRGWS-----ASAAAAGGATPEVQEPAA---GGDGGDAGL---------------------------------YRVIFASEKLGITIARHGGLPVVEEVAEWRAKDGLGPWPNDELVEVEGLEVAGLRYEAAVVDQCAVTLSLLRYEAAVEALRSRPLXXXXXXXXXXXXXXRPLALTFRRATYR---GPGFEEFVVTHTEGTGLEGIEACRGGLGDQLVVRSSRAYR 3463 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig656.15255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig656.15255.1 >prot_L-elsbetiae_contig656.15255.1 ID=prot_L-elsbetiae_contig656.15255.1|Name=mRNA_L-elsbetiae_contig656.15255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=461bp LEAAVGAVSLVDLSKGAAFPRLVSPAPAPVSGDARPPQVVLSYHFSPNTEback to top mRNA from alignment at L-elsbetiae_contig656:2434..15782+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig656.15255.1 ID=mRNA_L-elsbetiae_contig656.15255.1|Name=mRNA_L-elsbetiae_contig656.15255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=13349bp|location=Sequence derived from alignment at L-elsbetiae_contig656:2434..15782+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig656:2434..15782+ >mRNA_L-elsbetiae_contig656.15255.1 ID=mRNA_L-elsbetiae_contig656.15255.1|Name=mRNA_L-elsbetiae_contig656.15255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2766bp|location=Sequence derived from alignment at L-elsbetiae_contig656:2434..15782+ (Laminarionema elsbetiae ELsaHSoW15)back to top |