mRNA_L-elsbetiae_contig6557.15252.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6557.15252.1 vs. uniprot
Match: D7G513_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G513_ECTSI) HSP 1 Score: 440 bits (1132), Expect = 2.050e-138 Identity = 253/369 (68.56%), Postives = 285/369 (77.24%), Query Frame = 1 Query: 856 DDDSWFDDDGKDEPTPAPSTPAPVTAPTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVTESFTVEVPKLDETSVDFGLLVDVSGSYFDDITNLKLLATDLVEGLAVNTADLALGLGSFSDIAAKTGITDSEYTLVKPFGSCGDEVCLEQEQDDFIDAVNTLDADKSGFDVTIPESQTIALVRAAEDWSWRDGVLKILAITTDADFHVPGDIYSSGDEYFTLDEVIDACNAENIKILALKAPGAGVEMDTVAEGTGGVVATTSSDSDDIVGAVLQGLAGVQYSKVEVNWVCEDASWIVTVDPSSGYDDVDGGAMLDFTVTVVVPAGATAGTTCAANVLADEVLVGGQEFTFTADGTVTVTVVTP 1962 D++ W+D+ G+DEPTPAP T +APTR XXXXXXXXXX VSVTESFTV+VP+L ETSVDFGLLVDVS SY DI NLKLLA DLV+ LA +TA+LAL LGSFSDI +TGI SEYT++K FGSC DEVC EQEQDDF+ V+TL+A+ SG D T E+QTI L RAA +W+WRDGVLK+LAITTD FHVPGD YS DEY+ LDEVI ACN IKILALKA GAG EMD +AEGTGGVV TT +DS+DIVGA+LQG AGVQYSKV V WVCED+SW VTVDPSSGY++VDGGAMLDFTVTV VPAGAT GT+CAANVLADEVLVG Q FT DG+VTV V P Sbjct: 628 DEEPWYDN-GEDEPTPAPFT----SAPTRVIPXXXXXXXXXXTPGTP--------------VSVTESFTVKVPELTETSVDFGLLVDVSSSYAGDIANLKLLAGDLVQDLAASTANLALALGSFSDIEERTGIDGSEYTMLKDFGSCSDEVCFEQEQDDFVLEVDTLEANMSGMDWTYSEAQTIGLYRAATEWAWRDGVLKVLAITTDNSFHVPGDGYSYDDEYYNLDEVITACNENGIKILALKAVGAGDEMDYIAEGTGGVVETTQADSEDIVGAILQGFAGVQYSKVWVEWVCEDSSWSVTVDPSSGYENVDGGAMLDFTVTVSVPAGATVGTSCAANVLADEVLVGSQTFTTMTDGSVTVESVMP 977
BLAST of mRNA_L-elsbetiae_contig6557.15252.1 vs. uniprot
Match: D7G3T5_ECTSI (Integrin, beta chain-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T5_ECTSI) HSP 1 Score: 334 bits (857), Expect = 2.120e-105 Identity = 185/322 (57.45%), Postives = 226/322 (70.19%), Query Frame = 1 Query: 1042 SVTESFTVEVPKLDETSVDFGLLVDVSGSYFDDITNLKLLATDLVEGLAVNTA-----DLALGLGSFSDIAAKTGITDSEYTLVKPFGSCGD------EVCLEQEQDDFIDAVNTLDADKSGFDVTIPESQTIALVRAAEDWSWRDGVLKILAITTDADFHVPGDIYSSGDEYFTLDEVIDACNAENIKILALKAPGAGVEMDTVAEGTGGVVATTSSDSDDIVGAVLQGLAGVQYSKVEVNWVCEDA-----SWIVTVDPSSGYDDVDGGAMLDFTVTVVVPAGATAGTTCAANVLADEVLVGGQEFTFTADGTVTVTVVT 1959 S+T SF+V+VP L E+SVDFGLLVDVSGSY DDI NLK+LA DLVE L+ ++A D L LGS+SD TDS YT +KPFG+CG+ C E+E+ F+ AVN+L+ G PESQT+ALV AAE W+WRD LKIL ITTDA FHVPGD + DEY++LD+VI C A+NIKILALKAPGAG +MDTVA GTGGVV TTSSDS DIV +L+G+ V Y+KV++ W C D+ SW T PS G++DV+GG L+F+VTV VPAG AG C A V+ADEVL+GGQEF ADGT+T +T Sbjct: 28 SLTVSFSVQVPGLAESSVDFGLLVDVSGSYGDDIANLKVLAADLVEALSTDSAGVDVDDNRLALGSYSDFPEVGSSTDSAYTELKPFGNCGEGTEEEVSACFEEERASFLSAVNSLELGSGGDG---PESQTVALVSAAEGWAWRDAALKILVITTDASFHVPGDGSALADEYYSLDQVISTCLAKNIKILALKAPGAGDDMDTVALGTGGVVETTSSDSSDIVEKILEGIEAVTYNKVDIEWACRDSDFELNSWGHTQVPSEGHEDVEGGVELEFSVTVSVPAGVAAGKRCVALVVADEVLIGGQEFIANADGTITAAAIT 346
BLAST of mRNA_L-elsbetiae_contig6557.15252.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE) HSP 1 Score: 335 bits (860), Expect = 5.460e-98 Identity = 187/320 (58.44%), Postives = 226/320 (70.62%), Query Frame = 1 Query: 1039 VSVTESFTVEVPKLDETSVDFGLLVDVSGSYFDDITNLKLLATDLVEGLAVNTA-----DLALGLGSFSDIAAKTGITDSEYTLVKPFGSCGD------EVCLEQEQDDFIDAVNTLDADKSGFDVTIPESQTIALVRAAEDWSWRDGVLKILAITTDADFHVPGDIYSSGDEYFTLDEVIDACNAENIKILALKAPGAGVEMDTVAEGTGGVVATTSSDSDDIVGAVLQGLAGVQYSKVEVNWVCEDA-----SWIVTVDPSSGYDDVDGGAMLDFTVTVVVPAGATAGTTCAANVLADEVLVGGQEFTFTADGTVTVT 1950 V++T F+VEVP L E+SVDFGLLVDVSGSY DDI NLK LA DLVE L+ +TA D L LGSFSD + DS YT +KPFG+CG+ C E E+ F+DAVN+L + G + PESQT+ALV AA+ W+WRD LKILAITTDA FHVPGD S + YF+LD+VI AC A+NIKILALKAPGAG EMDT+A TGGVV TT+S+S DI+ +L G+ V Y+KV++ W C D+ +W T PS GY+DV+GGA LDF+VTV VPAG TAG C A V+ADEVL+GGQEF ADGT+T T Sbjct: 768 VTLTLPFSVEVPDLSESSVDFGLLVDVSGSYGDDIENLKTLAADLVEALSTDTAGVDVVDNRLALGSFSDFPSSDTSPDSAYTELKPFGNCGEGTEEEVSACFEAERSSFVDAVNSLVLEGGGDE---PESQTVALVSAADGWTWRDAALKILAITTDASFHVPGD--GSAESYFSLDDVISACLAKNIKILALKAPGAGEEMDTIATETGGVVETTTSNSSDILEKILVGIEAVTYNKVDIEWACRDSDFELNAWEHTQSPSEGYEDVEGGAELDFSVTVSVPAGVTAGKRCVALVVADEVLIGGQEFIANADGTITAT 1082
BLAST of mRNA_L-elsbetiae_contig6557.15252.1 vs. uniprot
Match: D7FQI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI3_ECTSI) HSP 1 Score: 263 bits (673), Expect = 9.390e-72 Identity = 159/323 (49.23%), Postives = 198/323 (61.30%), Query Frame = 1 Query: 1039 VSVTESFTVEVPKLDETSVDFGLLVDVSGSYFDDITNLKLLATDLVEGLAVNTA-----DLALGLGSFSDIAAKTGITDSEYTLVKPFGSCGD------EVCLEQEQDDFIDAVNTLDADKSGFDVTIPESQTIALVRAAEDWSWRDGVLKILAITTDADFHVPGDIYSSGDEYFTLDEVIDACNAENIKILALKAPGAGVEMDTVAEGTGGVVATTSSDSDDIVGAVLQGLAGVQYSKVEVNWVCEDA-----SWIVTVDPSSGYDDVDGGAMLDFTVTVVVPAGATAGTTCAANVLADEVLVGGQEFTFTADGTVTVTVVT 1959 VS+T F+V+VP L E+SVDFGLLVDVSGSY DDI NL++LA DLVE L+ ++A D L LGS+SD TDS YT +KPFG+CG+ C E+E+ FI+AV++L+ G+ PESQT+ALV AAE W+WRD LKILA LKAPGA EMDTVA GTGGVV TT+SDS DIV +L+G+ V Y+KV++ W C D+ SW T PS G++DV+GG L+F+VTV VPA TAG C A V+ADEVL+GGQEF ADGT+T T +T Sbjct: 855 VSMTLPFSVQVPDLAESSVDFGLLVDVSGSYGDDIDNLQVLAADLVEALSTDSAGVDVVDNRLALGSYSDFPEVGSPTDSAYTELKPFGNCGEGTEEEISTCFEEERTSFINAVDSLEL---GYGGDGPESQTVALVSAAEGWAWRDAALKILA---------------------------------------LKAPGASDEMDTVALGTGGVVETTASDSSDIVEKILEGIEAVTYNKVDIEWACRDSDFELNSWEHTQVPSEGHEDVEGGVELEFSVTVSVPASVTAGKRCVALVVADEVLIGGQEFIANADGTITATAIT 1135
BLAST of mRNA_L-elsbetiae_contig6557.15252.1 vs. uniprot
Match: D7FHN7_ECTSI (von Willebrand A domain containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN7_ECTSI) HSP 1 Score: 140 bits (354), Expect = 9.460e-34 Identity = 84/203 (41.38%), Postives = 103/203 (50.74%), Query Frame = 1 Query: 175 DESPPTTGATCSNGIYGVESDNGEVCCVAECGSCGGVGCSRFSPDLGADDCCVTEILLDGEACSVWGAAPCYIDGDSP----VPSPTGETPVEXXXXXXXXXXXXXXXXXXXPVSPGPXXXXXXXXXXXSPIADTT---CGNGMSGVASASGNVCCVAGCGSCGGVGCSRFSPDLGADDCCVTEILHDGEACSVTGAAPCFFD 762 D +P + CSNG+YG+ES NG+ CC CGSCGGVGCS G+ DCC +EI+ +GEAC+ GA+PCYIDGD VPS + P E G D C NG+ G+ SA G VCC A CG CGGVGC F +DCC+TEI+ G+ CS G APC+ D Sbjct: 97 DSAPISDIERCSNGVYGIESSNGKACCALTCGSCGGVGCSGRPG--GSYDCCESEIVEEGEACAATGASPCYIDGDEVLDPVVPSMSPVVPEETDMPSGFGG--------------GSYSYSYDFVSWDGDSMDDQFMWCTNGVPGMESAGGEVCCPADCGQCGGVGCGEFG-----EDCCITEIMDYGQPCSEIGTAPCYLD 278
BLAST of mRNA_L-elsbetiae_contig6557.15252.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 135 bits (340), Expect = 7.480e-29 Identity = 111/192 (57.81%), Postives = 129/192 (67.19%), Query Frame = 1 Query: 202 TCSNGIYGVESDNGEVCCVAECGSCGGVGCSRFSPDLGADDCCVTEILLDGEACSVWGAAPCYIDGDSPVPSPTGETPVEXXXXXXXXXXXXXXXXXXXPVSPGPXXXXXXXXXXXSPIADTTCGNGMSGVASASGNVCCVAGCGSCGGVGCSRFSPDLGADDCCVTEILHDGEACSVTGAAPCFFDDGAAP 777 TCSNGI G++S N CC+AECG CGG GC++ LG D+CC +EI G+ CSV AAPC +DG +P PSP XXXXXXXXXXXXXXXXXXX XXXXXXXXXX ADT C NG+ G+ S GN CC+A CG CGG GC++ LG D+CC +EI GE CSVT AAPC D G+AP Sbjct: 2112 TCSNGIPGIQSGN--ACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGKLCSVTLAAPCVVDGSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXADT-CSNGIPGIQS--GNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVTMAAPCVVD-GSAP 2293
BLAST of mRNA_L-elsbetiae_contig6557.15252.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 132 bits (333), Expect = 4.810e-28 Identity = 103/192 (53.65%), Postives = 120/192 (62.50%), Query Frame = 1 Query: 202 TCSNGIYGVESDNGEVCCVAECGSCGGVGCSRFSPDLGADDCCVTEILLDGEACSVWGAAPCYIDGDSPVPSPTGETPVEXXXXXXXXXXXXXXXXXXXPVSPGPXXXXXXXXXXXSPIADTTCGNGMSGVASASGNVCCVAGCGSCGGVGCSRFSPDLGADDCCVTEILHDGEACSVTGAAPCFFDDGAAP 777 TCSNGI G++S N CC+AECG CGG GC++ LG D+CC +EI GE CSV AAPC +DG +P PSP XXXXXXXXXXXXXXXXXXX XXXXX C NG+ G+ S GN CC+A CG CGG GC++ LG D+CC +EI GE CSV AAPC D G+AP Sbjct: 1768 TCSNGIPGIQSGN--ACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDGSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXX------------XXXXXXXXXSDMCSNGIPGIQS--GNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVD-GSAP 1942
BLAST of mRNA_L-elsbetiae_contig6557.15252.1 vs. uniprot
Match: A0A6H5KWI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI6_9PHAE) HSP 1 Score: 122 bits (305), Expect = 2.420e-25 Identity = 90/197 (45.69%), Postives = 112/197 (56.85%), Query Frame = 1 Query: 202 TCSN-GIYGVESDNGEVCCVAECGSCGGVGCSRFSP--DLGADDCCVTEILLDGEACSVWGAAPCYIDGDSPVPSPTGETPVEXXXXXXXXXXXXXXXXXXXPVSPGPXXXXXXXXXXXSPIADTTCGN-GMSGVASASGNVCCVAGCGSCGGVGCSRFSPDLGADD--CCVTEILHDGEACSVTGAAPCFFDDGAA 774 TC++ G+ G+ES N + CC CG+CGGVGCS+F LGA +CC +I+ GE+C+ G APCYID D E E XXXXXXXXXXXXXXXX G C + G+ G+ S++ CC CG+CGGVGCS+F G D CC EI+ DGE+CS TG APCF + G A Sbjct: 313 TCASYGVVGIESSNQKACCDVRCGACGGVGCSKFGEAYGLGAYECCSNDIVKQGESCAATGMAPCYIDSDD-------EWDYESKDXXXXXXXXXXXXXXXXXSGEG----------------TAMCASYGVVGIESSNQKACCDVRCGTCGGVGCSKFGEAYGLDASYCCSNEIVDDGESCSATGMAPCFIESGGA 486
BLAST of mRNA_L-elsbetiae_contig6557.15252.1 vs. uniprot
Match: D8LDU6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU6_ECTSI) HSP 1 Score: 122 bits (307), Expect = 2.430e-25 Identity = 92/194 (47.42%), Postives = 112/194 (57.73%), Query Frame = 1 Query: 199 ATC-SNGIYGVESDNGEVCCVAECGSCGGVGCSRFSP--DLGADDCCVTEILLDGEACSVWGAAPCYIDGDSPVPSPTGETPVEXXXXXXXXXXXXXXXXXXXPVSPGPXXXXXXXXXXXSPIADTTCGN-GMSGVASASGNVCCVAGCGSCGGVGCSRFSP--DLGADDCCVTEILHDGEACSVTGAAPCFFD 762 ATC S+G+ G+ES N +VCC CG+CGGVGCS+F LG CC + I DGE+C+V G APC+ID D XXXXXXXXXXXXXXXXXX TC + G+ G+ S++ VCC CG+CGGVGCS+F LG CC + I DGE+C+VTG APCF D Sbjct: 192 ATCASHGVVGIESSNKKVCCDLRCGTCGGVGCSKFGEAYGLGESSCCASTITDDGESCAVTGMAPCFIDSDDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGE-------------------GTATCASHGVVGIESSNKKVCCDLRCGTCGGVGCSKFGEAYGLGESSCCASTITDDGESCAVTGMAPCFID 366
BLAST of mRNA_L-elsbetiae_contig6557.15252.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI) HSP 1 Score: 114 bits (286), Expect = 9.370e-23 Identity = 75/192 (39.06%), Postives = 89/192 (46.35%), Query Frame = 1 Query: 205 CSNGIYGVESDNGEVCCVAECGSCGGVGCSRFSPDLGADDCCVTEILLDGEACSVWGAAPCYIDGDSPVPSPTGETPVEXXXXXXXXXXXXXXXXXXXPVSPGPXXXXXXXXXXXSPIADTTCGNGMSGVASASGNVCCVAGCGSCGGVGCSRFSPDLGADDCCVTEILHDGEACSVTGAAPCFFD-DGAAP 777 CSNG G+E CCV++CG+CGG GCS L DDCC IL G CS G APC++DGDS +P+ TP E P P + C N G A AGCG+CGG GCS+ P L DCC+ +I G CSVTG APCF D D +AP Sbjct: 21 CSNGFPGIEKSG--ACCVSDCGTCGGSGCSSRESGLTGDDCCTKNILKQGAPCSATGHAPCFLDGDS---TPSKSTPTESDGFVYEGCFND---------KPEPDRLFSYVTTMDD-MTTELCANECKGYAFFGLQWGREAGCGTCGGTGCSQ-RPGLTDSDCCIGKIEESGPLCSVTGKAPCFVDGDSSAP 196 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6557.15252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6557.15252.1 >prot_L-elsbetiae_contig6557.15252.1 ID=prot_L-elsbetiae_contig6557.15252.1|Name=mRNA_L-elsbetiae_contig6557.15252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=637bp MPVGTAPTAPGTVPVSPGPAAPTASPPVGEAPRPVAPTTGDESPPTTGATback to top mRNA from alignment at L-elsbetiae_contig6557:1237..9945- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6557.15252.1 ID=mRNA_L-elsbetiae_contig6557.15252.1|Name=mRNA_L-elsbetiae_contig6557.15252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8709bp|location=Sequence derived from alignment at L-elsbetiae_contig6557:1237..9945- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6557:1237..9945- >mRNA_L-elsbetiae_contig6557.15252.1 ID=mRNA_L-elsbetiae_contig6557.15252.1|Name=mRNA_L-elsbetiae_contig6557.15252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3822bp|location=Sequence derived from alignment at L-elsbetiae_contig6557:1237..9945- (Laminarionema elsbetiae ELsaHSoW15)back to top |