mRNA_L-elsbetiae_contig6548.15246.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6548.15246.1
Unique NamemRNA_L-elsbetiae_contig6548.15246.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6548.15246.1 vs. uniprot
Match: A0A6H5L4N8_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4N8_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.100e-20
Identity = 87/118 (73.73%), Postives = 88/118 (74.58%), Query Frame = 1 
Query:   46 AGKALAERMARQREEEERIRKLXXXXXXXXXXXXXXXXXARKAIEDEKARKRAKAKEKLDRKKKEGTYKTXXXXXXEARAEAAKAAMLAAGLEVPSAPAGGXXXXXXXXXXXXVYGKR 399
            AGK LAERMARQREEEERIRK+XXXXXXXXXXXXXXXXX        KARKRAKAKEKLDRKKKEGTYKT      EARAEAAKAAMLAAGLEVPS P  G            VYGKR
Sbjct:  183 AGKLLAERMARQREEEERIRKIXXXXXXXXXXXXXXXXXXXXXXXXXKARKRAKAKEKLDRKKKEGTYKTKKQKEQEARAEAAKAAMLAAGLEVPSVPTDGATAGGGKKSKI-VYGKR 299
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6548.15246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4N8_9PHAE2.100e-2073.73Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6548contigL-elsbetiae_contig6548:941..6081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue9.1e-18
Seed eggNOG ortholog2880.D8LKY1
Preferred nameFUN12
KEGG koko:K03243,ko:K12834
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000462,GO:0001732,GO:0001882,GO:0001883,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0030684,GO:0030687,GO:0031323,GO:0031326,GO:0031369,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033290,GO:0034248,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042254,GO:0042255,GO:0042274,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0070993,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG0532@1,KOG1144@2759
Ec32 ortholog descriptionEIF5B, eukaryotic translation initiation factor 5B
Ec32 orthologEc-11_005980.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03041
Exons4
Model size537
Cds size534
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6548.15246.1prot_L-elsbetiae_contig6548.15246.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6548 942..6081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816722.6968353-CDS-L-elsbetiae_contig6548:941..11501622816722.6968353-CDS-L-elsbetiae_contig6548:941..1150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6548 942..1150 -
1691683765.5648556-CDS-L-elsbetiae_contig6548:941..11501691683765.5648556-CDS-L-elsbetiae_contig6548:941..1150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6548 942..1150 -
1622816722.7080789-CDS-L-elsbetiae_contig6548:2110..22161622816722.7080789-CDS-L-elsbetiae_contig6548:2110..2216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6548 2111..2216 -
1691683765.5793025-CDS-L-elsbetiae_contig6548:2110..22161691683765.5793025-CDS-L-elsbetiae_contig6548:2110..2216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6548 2111..2216 -
1622816722.7186244-CDS-L-elsbetiae_contig6548:5285..53901622816722.7186244-CDS-L-elsbetiae_contig6548:5285..5390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6548 5286..5390 -
1691683765.5898025-CDS-L-elsbetiae_contig6548:5285..53901691683765.5898025-CDS-L-elsbetiae_contig6548:5285..5390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6548 5286..5390 -
1622816722.7308226-CDS-L-elsbetiae_contig6548:5967..60811622816722.7308226-CDS-L-elsbetiae_contig6548:5967..6081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6548 5968..6081 -
1691683765.607386-CDS-L-elsbetiae_contig6548:5967..60811691683765.607386-CDS-L-elsbetiae_contig6548:5967..6081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6548 5968..6081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6548.15246.1

>prot_L-elsbetiae_contig6548.15246.1 ID=prot_L-elsbetiae_contig6548.15246.1|Name=mRNA_L-elsbetiae_contig6548.15246.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
DKKEDDEEKKPKQSAAGKALAERMARQREEEERIRKLEEEEARLIAEEEA
KEAAARKAIEDEKARKRAKAKEKLDRKKKEGTYKTKKQKEQEARAEAAKA
AMLAAGLEVPSAPAGGAGAAGGGKKSKIVYGKRKPANKSKPAAAAAAAAA
AAADTPPPPPTSDDATKAKKAQEEKEKE
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mRNA from alignment at L-elsbetiae_contig6548:941..6081-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6548.15246.1 ID=mRNA_L-elsbetiae_contig6548.15246.1|Name=mRNA_L-elsbetiae_contig6548.15246.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5141bp|location=Sequence derived from alignment at L-elsbetiae_contig6548:941..6081- (Laminarionema elsbetiae ELsaHSoW15)
GATAAGAAGGAGGACGACGAGGAGAAGAAGCCCAAGCAGTCGGCGGCGGG
AAAAGCACTGGCGGAGAGAATGGCGAGGCAGCGAGAGGAGGAGGAACGAA
TCAGGAAGTTAGAGGTGTGTATGTACGTACGTACGCACATGCATGCTTTT
TTTTGTGTGTGCTGCTGTGTCGTGGTGCTTTCACGTGTCTTTTCACTTCT
TCGAATCAGATCGACCGGTTTTCTCTGGCGCGTGTGCGCTGCGCACCGGG
TGTTCCTGGGTTACATACGTTGGTATTTGGTTCTGCACCAACGCTTCAAC
TGCGGCTGTCTGCTGTCCGTGCTGCTGTACAGAAAAGAAGCGACCCGCTG
ATTGTACCGTACTGTAGCCTGGACCCCCCCCCCCCCAGCGCGCGCACGCG
CCTCCGATTTCGCGAAAGAACCGTATCTATGATATCGAACATGTACATCT
ATCTGCAATGGCCAAATTTCAAATTTATGTGGCTGTAAAAATCCCCCCCC
GAGTCCGCGAAAAAAAACTAGGTATATGTATGATCATCAGTCAGGATCGA
AGTCGGTTGTGTTTATCTGCCTGCCCATGCTAAGTTCTCTTGTCGCTTAT
GCTGTACCCTGTTCTGTTCTGTGCTGTTACGCTGCTACAACACCCTTTCG
CTGCTGCCGCTGCTGCCGCCGCTGCTGCTGCTGCTGTGCAGGAGGAAGAG
GCTCGCCTGATCGCCGAGGAGGAGGCTAAGGAGGCCGCCGCCAGGAAAGC
CATCGAGGACGAGAAGGCCAGGAAAAGAGCGAAGGCCAAAGAGAAGGTAT
ATATCTACACACACATGCGTGTGTGCGCGTGTCCTTCCCATTTATTTTGG
CGACAGTCCCCCCAAGTGGAGACGTGTACTATACACCTTGCGGTGTACTT
AGAGGTACTACACTTTGCAGTGCATTTGTCTGTACAACTAGAAGCAACCG
AGGTCACACAGGAGGGGGTGAACACTGGGGCTTTTTCTTCGTTTTTCTTT
TCTCTTTTTGCCCCACCTTCCTCCTGCGGTGCTTGCCTTCGTTTTTATCG
CGAGAAGGGTTCAGCTGTCCCTTTCCCTCGTCAACGTGATTACGTCGAAG
TTTGGTACTCACGAGCTTTTTAGCTTTTATCGCTTTCACCTGCAAAGTCG
CAAAATAAACACTTCTGCTTGGGAACGAACTCCAGACTTTGCTGCTAGTG
GGTTCGAGGTTAAACCACTAGACCACCGGGGCGACTTCGCATCTATCTAT
TTGTCTGTACAGGTGGTGTTACACGCCACCTCTCAAGAATTTGATATGTA
CTGGTAGTTAATTAAGAACATAAACATGTAGAAAAGTAGGCAGTTAAGAG
CCTCGGGGCCACTTGAGGTGCGTGGATAAGCACCTGCACGGGAAAGGAGC
CAAGGCGAAAAGAGAAGGCATCTTATCTATTTATGTGTACCCGGGTGGTG
TCACGCCACCCCTCGAGAACCTGATGCGCTTGTAGTCAAGAACCTTAAGG
GTTAATCGAGGCGCCTCGAAACAACGTACACGGGAAGAGAGCCAAGATAA
AGATGTAGGTATCTGCATATCTATAGCAGATGGTGTCATGACTCCGGGCT
CACTTGAGGTACCCGGATAAGAATCTGCACAGGAAAAGAGCCGGGGCCAA
AGAGGGGGTATCAAAACAGATAACGCCACGCCACCACTGCTGTATTAACT
TGAGAACTGAGGAACTTCAGGCGACTCACTTGAGATGCCCGGGATAAGAG
CTTTACACTAAAACCCGTGTAAAGATGTCCCACAGAGAATATAAAAACAA
ATAAGAACGGAGCCTCGGGGCAAAAACAAAATTAAGAGGTTCTTACGGGC
GCCACTACTGTCTCTACAAAAGGTTTGTATTGATCGAAGGTACAGTAGTA
GTAGTAGGCATTACGCCTGTGGTCGACCGATGTGGGTGGACTGGGTGACG
TATTCAAGAGGACCAGTCTGGTGGGGCAGAAGGAGGCGTTTTTATTGACG
AGAAAAAGCACCGTAGAGGGAGGGGAGGGAGGCTCCGGGAGATGAACCTT
TCTTGTGCGACCACGTGTGGTTCAGAGCTCTGGCAAGATGCCCCCTCGTG
ACAGGGAGGGAGGGGAGCTCCTTCTCGGGCGCTGGAGATGGATGTGGTGA
ACAATAGAGAAAGAGCAAAAAATGATGCTTGGAGAAGAGAGGGGGAGAGC
CAAAGGTTAAGGTCATATAGGTTAAGGCGATTCCCGTTACGCAGTCAGGT
GGTCTAGCTGGTATCCTCGAAACTCTCTTATTAGCAGGCAGGTTTTTAGG
TCAAAGGTTGTGGAGCCCCGGCGTTGTTATTGTGGTGGTATTTTTGTATT
TTTCCAGAAGGTGAGTTTTTTCTCTCGCTTTCGTTCCTGGCGGTGAGGAA
CACACGCTAGTCCGTGTGAGCACTTGAGGCAAGAGACGGCTGAAACTCTT
CTTGACAGAGCTCTGGCAAGATGCCCCCTCGTGATTAGGAGCGTCTCAAG
CGCTGGAAATAAGCGTGATGAAAGAAAATAAAAATAAAACGTGCATACTG
TACCTATCTCTCATGCTTTGGGTTGTTTTAATTAATGTATATATACCAAT
GCCGGCAGTCTTACCTATCATGTCCAGTCTGTGAAAGAGTCGTTCCAGAA
GGGATTACTGTTGTAGGCATACTTACCTCTCCCCGTTTCCCGGTCCAAGA
TACACTCACTCGCACAAAATCCGTAATGTTTTTGTGTGCTACATACTCTT
TATCGGTCGTGGTTCGCCCCGTGCGGCGGTGAATACCGCAATCATGCGAG
TCATGGCACACACACACACACACACACACACACACACACACACACACCGA
ACCGATTTTCAAAGCTCGATTGCTCCCGCTCCCTCACGAAGAGGGGGCCA
GCAACCAAACGGCATGTTTTCAGACAGCTTTCGACGTGACCGTCCCCAAT
GATTGATTGCCACCCTTTTTTCGGTGCCAGCGTGCCAGCACCCCGCCTTC
GTTTAGGCGTAATGGAGCTTTGAAAATCGTTGCGGAGGGGGGGGGGGGGG
GGCGCGATGCATGCGCCACACAAGCAGGTTGGAGTGCTGGGATCCGGTTT
NNNNNNNNNNGGCGCCCCCCCCCGGCTTTTTTTGGGGGTGATGGGGGTTT
GAAAGTGGGGGGGGGGGGGGGGGGGGGGGGGGTGCGATGACTCGCACGAT
AACGGTAGTTTGTAGGCTGGACTCGGCTTGACCTCTTGTTCTCACGTCGC
GTGTGTATTTGCTAAAAATAGTGCGTGTAAAATATACACGACGGTCACAA
AAAAAAAAACAACGACGATGGTTGTCGCACCGCTTTGACTCCTCTCTTCC
TTGAAAAATAAACAATGAATCAAAGATGGAAACCTACCCCACACTAGAGC
AAGGACTCGATATGGGGTTCAAACGGTAATCCATACAGTAGTGACGTAAT
ATTTGGCGAAGCGAGCAGAAAAACAAATCTAAAATATCAGAAGAGTTCAA
CATCTCCCCTGCAAAGATTTGCGAGGTCGGCCAACAATCTCTTCCTTTCC
TTTCCTTCCTTTCCTTTCGAAAGATAAGCAGATAATCAAATATGGAACCT
AACCCACATTGGAGACGGGACTCCCGTGAGAATTTTTGGTATTCCATATA
GTGACGTAATATTGGGCCGACCGAGCAGAAAAACACCTAAAATATTAGAA
GATTCAACATCTCCCCTGCAGTTCTCTGCCAGGTCAAACAACATGTACTC
CGGGGAGAAACCCTCCGTGATGTCGTGATACTGTGTCACCAACTTCTATG
ATAGGAACACATCGCATGATTTGACTTTCCTCTCGTTTCCCTCATGCAAC
GCATATATGAAACAGCTGGACCGCAAGAAAAAGGAGGGCACCTACAAGAC
CAAGAAGCAGAAGGAGCAGGAGGCGAGAGCGGAGGCTGCGAAGGCTGCGA
TGCTCGCCGCCGGCCTGGAGGGTGAGTAACCGCGTTGTGTAGGTGACACA
ATAATATACCACACACCCCTTGGATCGAGTTTTAGAGGAGCTCCATTACT
CCGTAACGAAGAGGGTGCCAGCACCAAAACGACACATCTTCGGACAGCGC
TGGACTGGATCTTTCCAACGCCACGCCCCTTTCGGCACTGGCACTCTTCT
TGCTGGGGAGGAATCGAGCTTCAGAGATCTGCCCAGGGGGGTGTTGTATC
TTGTGTCACCTACGGTAGACGGTGTTGTCGCTGTCTCTTTCTTGTGTTGC
AGCCACGGTGGCTTCGTTGTCTTGTTGGTGATGGTGGTGCCGATGCGGTC
TGGGTGTGTTGGTGCTGCCGTTTGTTGTTGTTGTTGTTGGTGGTGGTAGT
TCTATCGAAATCAATAGAGGACTCTCGGGCGGTATCAAGCGCATTTCCAT
GCTCACCCTGCCGGTTCCACTACCGGCACTAGTGGGCCGAGTCTCCCTGC
TACAAAAGTAGCGCACGGTAGCTGGTGATAATTATCAAGAGGGTTTCTAC
AGTCGTGTAAGTAATTTTCATCTGCTACCGCTGTGTTGTTGTTGCTGTTA
TTGTTTTCTTCACATTAAAAAAAATGTGTGCGGGTAGGGTATTTGCATGA
GAGCAACTTACAGTCGAGCTTCTTCCTTGAAATTGACGAAACTGCCGTGT
CTGGGGAACTGTCGCTTTGTTGCAATAGTTCCTTGTACTGTTTGTACGAA
GTATTGCTTATTTGTGTACATACGTAGCTTGCTAACGTTTGCGCTCAGAA
TTACCCACATTGCTCCTACACCGTGTGCATTGGATCAACATGTACGCACG
CATACATTCGGTTATGCCGTGCTAAATATGAAAAAAAATATATATATGTA
TATATGGGGGCATCGCTTTATACCCCCCACCCCCACCCCTCTCGGCCACG
CACACCTTTGATCAAAAATGGGGTGCAACAGTCCCGTCCGCCCCAGCCGG
CGGTGCTGGTGCTGCCGGCGGAGGGAAGAAGTCCAAGATCGTCTACGGGA
AGCGCAAGCCTGCCAACAAGTCCAAGCCGGCCGCCGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCGGACACCCCCCCTCCGCCTCCGACGAGCGATGATGC
CACCAAAGCCAAGAAGGCACAGGAGGAGAAGGAGAAGGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6548:941..6081-

>mRNA_L-elsbetiae_contig6548.15246.1 ID=mRNA_L-elsbetiae_contig6548.15246.1|Name=mRNA_L-elsbetiae_contig6548.15246.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1068bp|location=Sequence derived from alignment at L-elsbetiae_contig6548:941..6081- (Laminarionema elsbetiae ELsaHSoW15)
GATAAGAAGGAGGACGACGAGGAGAAGAAGCCCAAGCAGTCGGCGGCGGG
AAAAGCACTGGCGGAGAGAATGGCGAGGCAGCGAGAGGAGGAGGAACGAA
TCAGGAAGTTAGAGGATAAGAAGGAGGACGACGAGGAGAAGAAGCCCAAG
CAGTCGGCGGCGGGAAAAGCACTGGCGGAGAGAATGGCGAGGCAGCGAGA
GGAGGAGGAACGAATCAGGAAGTTAGAGGAGGAAGAGGCTCGCCTGATCG
CCGAGGAGGAGGCTAAGGAGGCCGCCGCCAGGAAAGCCATCGAGGACGAG
AAGGCCAGGAAAAGAGCGAAGGCCAAAGAGAAGGAGGAAGAGGCTCGCCT
GATCGCCGAGGAGGAGGCTAAGGAGGCCGCCGCCAGGAAAGCCATCGAGG
ACGAGAAGGCCAGGAAAAGAGCGAAGGCCAAAGAGAAGCTGGACCGCAAG
AAAAAGGAGGGCACCTACAAGACCAAGAAGCAGAAGGAGCAGGAGGCGAG
AGCGGAGGCTGCGAAGGCTGCGATGCTCGCCGCCGGCCTGGAGGCTGGAC
CGCAAGAAAAAGGAGGGCACCTACAAGACCAAGAAGCAGAAGGAGCAGGA
GGCGAGAGCGGAGGCTGCGAAGGCTGCGATGCTCGCCGCCGGCCTGGAGG
TCCCGTCCGCCCCAGCCGGCGGTGCTGGTGCTGCCGGCGGAGGGAAGAAG
TCCAAGATCGTCTACGGGAAGCGCAAGCCTGCCAACAAGTCCAAGCCGGC
CGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGACACCCCCCCTCCGC
CTCCGACGAGCGATGATGCCACCAAAGCCAAGAAGGCACAGGAGGAGAAG
GAGAAGGAGTCCCGTCCGCCCCAGCCGGCGGTGCTGGTGCTGCCGGCGGA
GGGAAGAAGTCCAAGATCGTCTACGGGAAGCGCAAGCCTGCCAACAAGTC
CAAGCCGGCCGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGACACCC
CCCCTCCGCCTCCGACGAGCGATGATGCCACCAAAGCCAAGAAGGCACAG
GAGGAGAAGGAGAAGGAG
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