mRNA_L-elsbetiae_contig6547.15244.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6547.15244.1
Unique NamemRNA_L-elsbetiae_contig6547.15244.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6547.15244.1 vs. uniprot
Match: D8LDI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI2_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 2.030e-12
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 MASDRQDDMGWTPPRPQAVTRQLSGSSPGSSRGKLRSEYQ 120
            MA+DRQ ++GWTPPR  AV+R+LSGSSPGSSRGKLRSEYQ
Sbjct:    1 MAADRQGELGWTPPRAPAVSRRLSGSSPGSSRGKLRSEYQ 40
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6547.15244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDI2_ECTSI2.030e-1280.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6547contigL-elsbetiae_contig6547:2955..4650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_000500.1
Exons2
Model size225
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816722.5729253-CDS-L-elsbetiae_contig6547:2954..30511622816722.5729253-CDS-L-elsbetiae_contig6547:2954..3051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6547 2955..3051 -
1691683765.4604986-CDS-L-elsbetiae_contig6547:2954..30511691683765.4604986-CDS-L-elsbetiae_contig6547:2954..3051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6547 2955..3051 -
1622816722.584448-CDS-L-elsbetiae_contig6547:4522..46501622816722.584448-CDS-L-elsbetiae_contig6547:4522..4650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6547 4523..4650 -
1691683765.4771352-CDS-L-elsbetiae_contig6547:4522..46501691683765.4771352-CDS-L-elsbetiae_contig6547:4522..4650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6547 4523..4650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6547.15244.1prot_L-elsbetiae_contig6547.15244.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6547 2955..4650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6547.15244.1

>prot_L-elsbetiae_contig6547.15244.1 ID=prot_L-elsbetiae_contig6547.15244.1|Name=mRNA_L-elsbetiae_contig6547.15244.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
MASDRQDDMGWTPPRPQAVTRQLSGSSPGSSRGKLRSEYQASGLGGMTIK
KRRSGALKFSANTTDSRPAAAAAAA
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mRNA from alignment at L-elsbetiae_contig6547:2955..4650-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6547.15244.1 ID=mRNA_L-elsbetiae_contig6547.15244.1|Name=mRNA_L-elsbetiae_contig6547.15244.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1696bp|location=Sequence derived from alignment at L-elsbetiae_contig6547:2955..4650- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTCTGACAGGCAGGACGACATGGGGTGGACGCCCCCGCGACCACA
GGCGGTCACGAGGCAGCTCTCTGGGTCGAGCCCGGGATCCTCGAGGGGAA
AGCTTCGATCAGAGTACCAGGCAAGTGGGTTATGTTTCGTGAGGTTGGTT
TTGTTCGTTCAAACCGTACACACACAGCACAGGTTGTTATCTGGTTTGTG
ATGCTCTCGTCGTTACGATCGGGCTTTTTTCCATACGGACGACGGTGTGT
GATTTACGTCATGTGCGTGGGTGGTTAGGCTCGACAACCCATTTGAACGC
GAGCTGTAATCGAGGCGGGGAGGATATTTGTCTGATGTGTCCACTAAAAT
CTACTTCCATATATCTGTGTGTAGGCAACACAGCGCAGCACACCTCTGTT
CGTGATTGCTCCGACAGCAGCAAGGTAACAGCGATGTAAGTTGATCTGAC
CCCCCTTTGCCTTTGTGGGCCATGGGTGTGCACTGCGTGTGTTGTCCCGT
TGTGTTGGATTTGAGCTGGAATGCTATGAAGCTGCTCAGCCTGTCGTGTG
ATTGCCGCGTCGTATTATTGTTCGTGTGTTGTTGCAAGGGTCCCCCCCTC
TCCCTCCCTCTCCCTCCTCGCCGTCACCAACGTTTTTCGAATAAAACCGA
GAATCAACGAGGCAACCAACCTCTCCACAAAAAGAAATATCTGGTCTCTG
TGTGGCGAATTAACAATCCCATACAATACGGCAGTAGTAGTCAGTGATGT
AATATTGGTCCCGGCCCAGGTAGAAAAACACCAGATGTAGGTAGATACAT
GAATGAAATGTTAAAAAGTTTCATCACCCTGCCCTGCGCGACTCTGCCAC
GGGCTCAAGAAGTATGTTTTGTAAAACACGTAAAGTAGATAATCCTATTC
TTTCGGATGGGGCAGGCAACCCCGGCCGGGAGAGATGCAAGTGGCCACAC
CCCTAACAATCGATGTTGTATTGTTCGTGGGATCGGTTCATTTTTCCTTT
GTATGTATGTATCTGTGTGTGTGTACATGAAGCTCTGCAAGAAACCTCTT
GTAATTATGATGGCCTCTAGGTGAAAAACAACAACGAATTAGCGAATTTG
ATCGAGGTTCCGGGTTTCGCAGTTTGTCGGCGGGCGTTTGCGTCGAATTC
GTAAGCAAGTCTGCTTTTTTGTGGGAGTCGCAGCGAGACAAACTAGAAGC
GCACACACCATTCCATTTTCGCCGCGACTTGTTTCGGACTTAAGCTGTGC
CTCTTTTCCGGCCTGCGTAGACTACTTTCTACCTCGAACTACATATCCAT
GTGCGTACACGGTCGTATTGTACTTGGCGGAGAAAAACGCTACCTATGCG
CTGCAATGCATTTATGTTCGCAGCAGAGCTGTATGTAGAGGGCTTGTAGC
CTATTGTACGCCATGCTTCTTGTCGCCGCGCCTTGGGGTTGTGGAGTTGC
CTCCGGAACCCTCGCGCCCATCAACCGTCGTTTCAAGTCTGACCAAGCCT
CCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCGCC
CCCTGACCGCGCCGCAAACGATTTCCCTTCACTGCTGACTACAGGCGAGA
CTAGGCGGGATGACCATCAAGAAGCGACGATCAGGGGCCCTCAAGTTCTC
GGCAAACACCACCGACAGCCGGCCCGCCGCCGCCGCCGCAGCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6547:2955..4650-

>mRNA_L-elsbetiae_contig6547.15244.1 ID=mRNA_L-elsbetiae_contig6547.15244.1|Name=mRNA_L-elsbetiae_contig6547.15244.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig6547:2955..4650- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTCTGACAGGCAGGACGACATGGGGTGGACGCCCCCGCGACCACA
GGCGGTCACGAGGCAGCTCTCTGGGTCGAGCCCGGGATCCTCGAGGGGAA
AGCTTCGATCAGAGTACCAGGCAAGTGGATGGCCTCTGACAGGCAGGACG
ACATGGGGTGGACGCCCCCGCGACCACAGGCGGTCACGAGGCAGCTCTCT
GGGTCGAGCCCGGGATCCTCGAGGGGAAAGCTTCGATCAGAGTACCAGGC
AAGTGGACTAGGCGGGATGACCATCAAGAAGCGACGATCAGGGGCCCTCA
AGTTCTCGGCAAACACCACCGACAGCCGGCCCGCCGCCGCCGCCGCAGCC
GCCACTAGGCGGGATGACCATCAAGAAGCGACGATCAGGGGCCCTCAAGT
TCTCGGCAAACACCACCGACAGCCGGCCCGCCGCCGCCGCCGCAGCCGCC
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