mRNA_L-elsbetiae_contig6539.15241.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6539.15241.1
Unique NamemRNA_L-elsbetiae_contig6539.15241.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6539.15241.1 vs. uniprot
Match: UPI001EE9C0E7 (uncharacterized protein LOC124370291 n=3 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EE9C0E7)

HSP 1 Score: 328 bits (841), Expect = 5.580e-107
Identity = 187/251 (74.50%), Postives = 205/251 (81.67%), Query Frame = 1
Query:    1 VLGVGDRVADDILEEHLEHTAGLLVNEPRDTLDTATASETADGRLGDALDVVAEYLPVALGPTLAQTLTALSASRHVVNHT----HDASMPDAGCLV--GCRTLAHSHTI-SLNSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 732
            VLGV D V D +L++HLEH+AGLLV+E RDTLDTA AS+T D  LGDALDVV E+LPV LG +L+Q LT  +++ HV             P  G  V  GC     SH     ++MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:  296 VLGVCDGVTDHVLQKHLEHSAGLLVDEARDTLDTAAASQTTDCGLGDALDVVTEHLPVTLGASLSQPLTTFASTGHVAVAVALVKQMIKSPVLGSFVNSGCSGKNISHLARQADAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 546          
BLAST of mRNA_L-elsbetiae_contig6539.15241.1 vs. uniprot
Match: A0A6L5CPT4_9INSE (Uncharacterized protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5CPT4_9INSE)

HSP 1 Score: 319 bits (818), Expect = 6.120e-104
Identity = 178/244 (72.95%), Postives = 197/244 (80.74%), Query Frame = 1
Query:    1 VLGVGDRVADDILEEHLEHTAGLLVNEPRDTLDTATASETADGRLGDALDVVAEYLPVALGPTLAQTLTALSASRHVVNHTHDASMPDAGCLVGCRTLAHSHTISLNSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 732
            VLG+GD VAD +LEEHLE TAGLLV+E RDTL + TAS+TADG LGD LDV+A+ L + LG +LA++L++ +A+ H                                MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:  300 VLGIGDGVADHVLEEHLEDTAGLLVDEARDTLHSTTASQTADGGLGDTLDVIAKNLAMTLGASLAESLSSFAATGHT-------------------------------MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 512          
BLAST of mRNA_L-elsbetiae_contig6539.15241.1 vs. uniprot
Match: A0A8B7FLL1_MICMU (uncharacterized protein LOC105865490 n=3 Tax=Lemuriformes TaxID=376915 RepID=A0A8B7FLL1_MICMU)

HSP 1 Score: 312 bits (799), Expect = 4.180e-102
Identity = 182/277 (65.70%), Postives = 206/277 (74.37%), Query Frame = 1
Query:    1 VLGVGDRVADDILEEHLEHTAGLLVNEPRDTLDTATASETADGRLGDALDVVAEYLPVALGPTLAQTLTALSASRHVVN-----------HTHDA------------------SMPDAGCLVGC----RTLAHSHTISLNSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 732
            VL VGDRV DD+L+EHL+HT  L +NE RD LD + AS+T +G L +ALDVV++ L +AL    A+T +A S +RH  N            TH+                    +P    L+ C    + + H+ TI  N MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:  157 VLRVGDRVPDDVLQEHLQHTPSLFINEARDPLDASAASKTPNGGLRNALDVVSQDLAMALSAAFAETFSAFSPARHDCNADDTISLEKTASTHEKLLKILIKLTNFYIVFSVQEIPLKSLLLYCDFHRKMVIHNDTIK-NIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 432          
BLAST of mRNA_L-elsbetiae_contig6539.15241.1 vs. uniprot
Match: UPI001AEF6E3D (uncharacterized protein LOC121142140 n=3 Tax=Rodentia TaxID=9989 RepID=UPI001AEF6E3D)

HSP 1 Score: 306 bits (783), Expect = 1.080e-100
Identity = 176/244 (72.13%), Postives = 187/244 (76.64%), Query Frame = 1
Query:    1 VLGVGDRVADDILEEHLEHTAGLLVNEPRDTLDTATASETADGRLGDALDVVAEYLPVALGPTLAQTLTALSASRHVVNHTHDASMPDAGCLVGCRTLAHSHTISLNSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 732
            VLGVGD VAD +L+EHL+HTAGLLV+E RD LDT T+S+ ADG LGDALDVV            AQ LTA     H                               +MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:  157 VLGVGDGVADHVLQEHLQHTAGLLVDEARDALDTTTSSQAADGGLGDALDVV------------AQNLTAPGRQSH------------------------------KTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 358          
BLAST of mRNA_L-elsbetiae_contig6539.15241.1 vs. uniprot
Match: UPI001CEFC89A (uncharacterized protein LOC122899199 n=1 Tax=Neovison vison TaxID=452646 RepID=UPI001CEFC89A)

HSP 1 Score: 304 bits (778), Expect = 2.230e-98
Identity = 181/275 (65.82%), Postives = 200/275 (72.73%), Query Frame = 1
Query:   10 VGDRVADDILEEHLEHTAGLLVNEPRDTLDTATASETADGRLGDALDVVAEYLPVALGPTLAQTLTALSASRH---------------------------VVN----HTHDASMPDAGCLVGCRTLAHSHTISL---NSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 732
            +GD V DD+L+EHL+HT  LL++E  D LD +T S+  + R G+ALDVV ++L VALG   AQ LTALS SRH                           +V+    H   A   + G   G   L   H   L   N MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:  203 LGDCVPDDVLQEHLQHTPSLLIDEAGDPLDASTPSKAPNRRFGNALDVVPQHLAVALGTPFAQALTALSPSRHNDCSSQTQLLERSSKVDPCLQPEIGGRIVSPWMPHVELAKFAELGVSRG--NLFEDHYQKLPYENIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 475          
BLAST of mRNA_L-elsbetiae_contig6539.15241.1 vs. uniprot
Match: UPI00106E9675 (uncharacterized protein LOC114553512 n=1 Tax=Perca flavescens TaxID=8167 RepID=UPI00106E9675)

HSP 1 Score: 299 bits (765), Expect = 2.280e-96
Identity = 172/247 (69.64%), Postives = 191/247 (77.33%), Query Frame = 1
Query:    7 GVGDRVADDILEEHLEHTAGLLVNEPRDTLDTATASETADGRLGDALDVVAEYLPVALGPTLAQTLTALSASRHVVNHTHDASMPDAGCLVGCRTLAHSHTISL-----NSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 732
            G GD + D +L+EHL+HTAGLLV++  DTL +A AS+TADG LGDALDV+ E         L++TL            +   S+      V    L  S  I +      +MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:  233 GAGDGITDHVLQEHLQHTAGLLVDQTGDTLHSAAASQTADGGLGDALDVITENFTAFSKEMLSETLVDKVPEYIEKLGSAIGSLNPVPNAVRLGALVISMIIEIIIKRQKAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 479          
BLAST of mRNA_L-elsbetiae_contig6539.15241.1 vs. uniprot
Match: UPI0014867E3D (uncharacterized protein LOC117707392 n=2 Tax=Muroidea TaxID=337687 RepID=UPI0014867E3D)

HSP 1 Score: 295 bits (756), Expect = 2.660e-96
Identity = 172/244 (70.49%), Postives = 187/244 (76.64%), Query Frame = 1
Query:    1 VLGVGDRVADDILEEHLEHTAGLLVNEPRDTLDTATASETADGRLGDALDVVAEYLPVALGPTLAQTLTALSASRHVVNHTHDASMPDAGCLVGCRTLAHSHTISLNSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 732
            VL V D VAD +L+EHL+HT GLL++E  DTLDT T S+ ADGRLGDALDVV + L             + SAS++                  C+            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:  179 VLSVRDCVADHVLQEHLQHTTGLLIDEAGDTLDTTTPSQAADGRLGDALDVVPQDL-------------SASASQN------------------CK-----------GMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 380          
BLAST of mRNA_L-elsbetiae_contig6539.15241.1 vs. uniprot
Match: UPI001AAD7B44 (uncharacterized protein LOC120898323 n=9 Tax=Diptera TaxID=7147 RepID=UPI001AAD7B44)

HSP 1 Score: 300 bits (767), Expect = 2.750e-96
Identity = 167/244 (68.44%), Postives = 194/244 (79.51%), Query Frame = 1
Query:    1 VLGVGDRVADDILEEHLEHTAGLLVNEPRDTLDTATASETADGRLGDALDVVAEYLPVALGPTLAQTLTALSASRHVVNHTHDASMPDAGCLVGCRTLAHSHTISLNSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 732
            V  V DR+ + IL+++ +   G LV+E  DT  ++  S+TADG LG+ALDV+ ++  V LG +  QT ++LS+S    +  H     + GC +     A  +  S + MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:  274 VFSVSDRITNHILQKYFQDATGFLVDEAGDTFHSSAPSQTADGGLGNALDVIPQHFSVTLGSSFTQTFSSLSSSG---DDEHRIMRENKGCSLR----AQRNLRSRSEMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 510          
BLAST of mRNA_L-elsbetiae_contig6539.15241.1 vs. uniprot
Match: UPI0013C41DCA (uncharacterized protein LOC115519791 n=1 Tax=Lynx canadensis TaxID=61383 RepID=UPI0013C41DCA)

HSP 1 Score: 300 bits (769), Expect = 7.470e-96
Identity = 169/244 (69.26%), Postives = 188/244 (77.05%), Query Frame = 1
Query:    1 VLGVGDRVADDILEEHLEHTAGLLVNEPRDTLDTATASETADGRLGDALDVVAEYLPVALGPTLAQTLTALSASRHVVNHTHDASMPDAGCLVGCRTLAHSHTISLNSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 732
            VL VGD + +++ +E+L+H  GLLV+E  D LD++T  +  + RLGDALDVV +   VALG  LAQ    LS+ RH      D +                       MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:  349 VLSVGDCIPNNVFQENLQHAPGLLVDEAGDPLDSSTPGKAPNCRLGDALDVVPQNFAVALGTPLAQAFATLSSPRHSEKQAGDTTF--------------------GIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 572          
BLAST of mRNA_L-elsbetiae_contig6539.15241.1 vs. uniprot
Match: UPI00140F5013 (uncharacterized protein LOC117015086 n=1 Tax=Rhinolophus ferrumequinum TaxID=59479 RepID=UPI00140F5013)

HSP 1 Score: 293 bits (749), Expect = 2.780e-95
Identity = 170/244 (69.67%), Postives = 181/244 (74.18%), Query Frame = 1
Query:    1 VLGVGDRVADDILEEHLEHTAGLLVNEPRDTLDTATASETADGRLGDALDVVAEYLPVALGPTLAQTLTALSASRHVVNHTHDASMPDAGCLVGCRTLAHSHTISLNSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 732
            VL VGD V D +L+EHL+HTAGLLVNE RD LD++T SE  D  LGD LDVV ++                    H  N T D                         MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:  176 VLRVGDGVPDHVLQEHLQHTAGLLVNEARDALDSSTPSEAPDRGLGDPLDVVPQHFT------------------HSRNKTGDI------------------------MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 377          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6539.15241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001EE9C0E75.580e-10774.50uncharacterized protein LOC124370291 n=3 Tax=Homal... [more]
A0A6L5CPT4_9INSE6.120e-10472.95Uncharacterized protein n=1 Tax=Ephemera danica Ta... [more]
A0A8B7FLL1_MICMU4.180e-10265.70uncharacterized protein LOC105865490 n=3 Tax=Lemur... [more]
UPI001AEF6E3D1.080e-10072.13uncharacterized protein LOC121142140 n=3 Tax=Roden... [more]
UPI001CEFC89A2.230e-9865.82uncharacterized protein LOC122899199 n=1 Tax=Neovi... [more]
UPI00106E96752.280e-9669.64uncharacterized protein LOC114553512 n=1 Tax=Perca... [more]
UPI0014867E3D2.660e-9670.49uncharacterized protein LOC117707392 n=2 Tax=Muroi... [more]
UPI001AAD7B442.750e-9668.44uncharacterized protein LOC120898323 n=9 Tax=Dipte... [more]
UPI0013C41DCA7.470e-9669.26uncharacterized protein LOC115519791 n=1 Tax=Lynx ... [more]
UPI00140F50132.780e-9569.67uncharacterized protein LOC117015086 n=1 Tax=Rhino... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6539contigL-elsbetiae_contig6539:7606..8539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score321.6
Seed ortholog evalue3.1e-85
Seed eggNOG ortholog9739.XP_004315566.1
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein heterodimerization activity
EggNOG OGs39ZTV@33154,3BPDH@33208,3D6BK@33213,48E1W@7711,494V8@7742,COG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons2
Model size735
Cds size735
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816722.2162087-CDS-L-elsbetiae_contig6539:7605..81041622816722.2162087-CDS-L-elsbetiae_contig6539:7605..8104Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6539 7606..8104 -
1691683765.1954648-CDS-L-elsbetiae_contig6539:7605..81041691683765.1954648-CDS-L-elsbetiae_contig6539:7605..8104Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6539 7606..8104 -
1622816722.2283158-CDS-L-elsbetiae_contig6539:8303..85391622816722.2283158-CDS-L-elsbetiae_contig6539:8303..8539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6539 8304..8539 -
1691683765.2055755-CDS-L-elsbetiae_contig6539:8303..85391691683765.2055755-CDS-L-elsbetiae_contig6539:8303..8539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6539 8304..8539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6539.15241.1prot_L-elsbetiae_contig6539.15241.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6539 7606..8539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6539.15241.1

>prot_L-elsbetiae_contig6539.15241.1 ID=prot_L-elsbetiae_contig6539.15241.1|Name=mRNA_L-elsbetiae_contig6539.15241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=245bp
VLGVGDRVADDILEEHLEHTAGLLVNEPRDTLDTATASETADGRLGDALD
VVAEYLPVALGPTLAQTLTALSASRHVVNHTHDASMPDAGCLVGCRTLAH
SHTISLNSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRY
RPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLA
LQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
back to top

mRNA from alignment at L-elsbetiae_contig6539:7606..8539-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6539.15241.1 ID=mRNA_L-elsbetiae_contig6539.15241.1|Name=mRNA_L-elsbetiae_contig6539.15241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=934bp|location=Sequence derived from alignment at L-elsbetiae_contig6539:7606..8539- (Laminarionema elsbetiae ELsaHSoW15)
GTGCTCGGTGTAGGTGACCGAGTCGCGGATGACATTCTCGAGGAACACCT TGAGCACACCGCGGGTCTCCTCGTAAATGAGCCCCGAGATACGCTTGACA CCGCCACGGCGAGCGAGACGGCGGATGGCAGGCTTGGTGATGCCCTGGAT GTTGTCGCGGAGTACCTTCCGGTGGCGCTTGGCCCCACCCTTGCCCAGAC CCTTACCGCCCTTTCCGCGTCCAGACATGTTGTTAAGTTGAGTTGTGGGA GGAGAATTGAGATGTGGTGATTGTGAGGCGGGTGAGGGGGTGGGGCGCTG ATCCTCTCGATTCTCGATCCGTCGAATGTCCTGCGTCGTCCGGGCAGAAC CGTCCCTCCAGCGGGAACAAACGAGGCACGCTGATTGGCCAGATGTTGTT AATTGCAGTTCGAACCGTCACCGATGTTACCGCAGCCACACGCACGATGC CTCGATGCCCGATGCCGGATGCCTTGTAGGATGCCGCACACTCGCACACT CGCACACAATATCTCTAAACAGCATGGCTCGCACGAAGCAGACCGCCCGT AAGTCTACCGGAGGCAAGGCCCCCCGCAAGCAGCTGGCCACCAAGGCGGC ACGCAAATCTGCCCCTGCAACGGGCGGAGTGAAGAAGCCCCACCGCTACA GGCCCGGCACCGTTGCGCTCCGCGAGATCCGTCGCTACCAGAAGTCCACG GAGCTGCTGATCCGCAAGCTTCCCTTCCAGCGCCTTGTGCGCGAGATCGC CCAGGACTTCAAGAGCGACCTCCGTTTCCAGGGCTCCGCCGTGCTCGCCC TCCAGGAGGCCGCTGAGGCCTACCTTGTGGGCCTGTTCGAGGACACCAAC CTGTGCGCCATCCACGCCAAGCGCGTGACCATCATGCCCAAGGACATACA GCTCGCGCGCCGCATCCGCGGTGAGCGCTCTTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6539:7606..8539-

>mRNA_L-elsbetiae_contig6539.15241.1 ID=mRNA_L-elsbetiae_contig6539.15241.1|Name=mRNA_L-elsbetiae_contig6539.15241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1470bp|location=Sequence derived from alignment at L-elsbetiae_contig6539:7606..8539- (Laminarionema elsbetiae ELsaHSoW15)
GTGCTCGGTGTAGGTGACCGAGTCGCGGATGACATTCTCGAGGAACACCT
TGAGCACACCGCGGGTCTCCTCGTAAATGAGCCCCGAGATACGCTTGACA
CCGCCACGGCGAGCGAGACGGCGGATGGCAGGCTTGGTGATGCCCTGGAT
GTTGTCGCGGAGTACCTTCCGGTGGCGCTTGGCCCCACCCTTGCCCAGAC
CCTTACCGCCCTTTCCGCGTCCAGACATGTTGTTAAGTGCTCGGTGTAGG
TGACCGAGTCGCGGATGACATTCTCGAGGAACACCTTGAGCACACCGCGG
GTCTCCTCGTAAATGAGCCCCGAGATACGCTTGACACCGCCACGGCGAGC
GAGACGGCGGATGGCAGGCTTGGTGATGCCCTGGATGTTGTCGCGGAGTA
CCTTCCGGTGGCGCTTGGCCCCACCCTTGCCCAGACCCTTACCGCCCTTT
CCGCGTCCAGACATGTTGTTAACCACACGCACGATGCCTCGATGCCCGAT
GCCGGATGCCTTGTAGGATGCCGCACACTCGCACACTCGCACACAATATC
TCTAAACAGCATGGCTCGCACGAAGCAGACCGCCCGTAAGTCTACCGGAG
GCAAGGCCCCCCGCAAGCAGCTGGCCACCAAGGCGGCACGCAAATCTGCC
CCTGCAACGGGCGGAGTGAAGAAGCCCCACCGCTACAGGCCCGGCACCGT
TGCGCTCCGCGAGATCCGTCGCTACCAGAAGTCCACGGAGCTGCTGATCC
GCAAGCTTCCCTTCCAGCGCCTTGTGCGCGAGATCGCCCAGGACTTCAAG
AGCGACCTCCGTTTCCAGGGCTCCGCCGTGCTCGCCCTCCAGGAGGCCGC
TGAGGCCTACCTTGTGGGCCTGTTCGAGGACACCAACCTGTGCGCCATCC
ACGCCAAGCGCGTGACCATCATGCCCAAGGACATACAGCTCGCGCGCCGC
ATCCGCGGTGAGCGCTCTTAACCACACGCACGATGCCTCGATGCCCGATG
CCGGATGCCTTGTAGGATGCCGCACACTCGCACACTCGCACACAATATCT
CTAAACAGCATGGCTCGCACGAAGCAGACCGCCCGTAAGTCTACCGGAGG
CAAGGCCCCCCGCAAGCAGCTGGCCACCAAGGCGGCACGCAAATCTGCCC
CTGCAACGGGCGGAGTGAAGAAGCCCCACCGCTACAGGCCCGGCACCGTT
GCGCTCCGCGAGATCCGTCGCTACCAGAAGTCCACGGAGCTGCTGATCCG
CAAGCTTCCCTTCCAGCGCCTTGTGCGCGAGATCGCCCAGGACTTCAAGA
GCGACCTCCGTTTCCAGGGCTCCGCCGTGCTCGCCCTCCAGGAGGCCGCT
GAGGCCTACCTTGTGGGCCTGTTCGAGGACACCAACCTGTGCGCCATCCA
CGCCAAGCGCGTGACCATCATGCCCAAGGACATACAGCTCGCGCGCCGCA
TCCGCGGTGAGCGCTCTTAA
back to top