mRNA_L-elsbetiae_contig6534.15234.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6534.15234.1
Unique NamemRNA_L-elsbetiae_contig6534.15234.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6534.15234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6534contigL-elsbetiae_contig6534:9094..10312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size942
Cds size942
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.710578-CDS-L-elsbetiae_contig6534:9093..96221622816721.710578-CDS-L-elsbetiae_contig6534:9093..9622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6534 9094..9622 -
1691683764.8848605-CDS-L-elsbetiae_contig6534:9093..96221691683764.8848605-CDS-L-elsbetiae_contig6534:9093..9622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6534 9094..9622 -
1622816721.7222466-CDS-L-elsbetiae_contig6534:9899..103121622816721.7222466-CDS-L-elsbetiae_contig6534:9899..10312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6534 9900..10312 -
1691683764.8947093-CDS-L-elsbetiae_contig6534:9899..103121691683764.8947093-CDS-L-elsbetiae_contig6534:9899..10312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6534 9900..10312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6534.15234.1prot_L-elsbetiae_contig6534.15234.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6534 9094..10312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6534.15234.1

>prot_L-elsbetiae_contig6534.15234.1 ID=prot_L-elsbetiae_contig6534.15234.1|Name=mRNA_L-elsbetiae_contig6534.15234.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=314bp
QRQQAKPVGGNDAVTSQTTNPFPGFLSPEQPPSSLQLRWGGVDGGGGGGG
GKLGGEVKPCLPHPSRLVGGQQQQAAVAAGPSSGPESATGPICTLPLSTG
AFPSGPSGDSSGSGSSSNFGYGFAPNPYHSARAASGIWSGRISGTPYPAV
TLGSTKSLLDSGNGVNSSSTTTTTTTTTEISRPQQNGTTASAASSSSSSP
PPANFSTSSTFSSSSSFSFAPSPSVNSTGFGCASGLASSGLAATSPASFA
EAGSYPQSFGGLEHSGSGSSYHQSRAAAGFNPFSEDDFSRGAAWGAGNRA
EGSYLWQAGGSGFE
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mRNA from alignment at L-elsbetiae_contig6534:9094..10312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6534.15234.1 ID=mRNA_L-elsbetiae_contig6534.15234.1|Name=mRNA_L-elsbetiae_contig6534.15234.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1219bp|location=Sequence derived from alignment at L-elsbetiae_contig6534:9094..10312- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGGCAGCAAGCGAAACCGGTGGGTGGCAACGACGCGGTCACGAGCCA
GACGACCAACCCTTTTCCCGGGTTCCTCTCGCCGGAGCAACCACCTTCAT
CTTTGCAGCTGCGATGGGGCGGCGTCGATGGCGGCGGCGGCGGCGGCGGT
GGCAAGCTCGGCGGGGAGGTGAAGCCCTGCCTCCCTCACCCCAGCCGCCT
GGTCGGCGGACAGCAACAGCAAGCGGCGGTAGCGGCAGGCCCTTCCTCGG
GACCTGAGAGCGCTACGGGTCCGATCTGTACTCTGCCGCTTTCTACAGGC
GCGTTTCCATCGGGGCCCTCCGGTGACAGCAGCGGCAGCGGCAGCAGCTC
CAACTTTGGATATGGGTTCGCCCCCAACCCGTACCATTCTGCTCGTGCGG
CTTCCGGTATCTGGTGAGCCCGTTGGCTTTTCCTAGGCAATTTCTCTCGG
CCCGTTCCTAATGATCCCTGTTGCCGTTGCCCCAGGCGTCGTCGGTTGCA
GTAACTCGGAACGGAGAGCGAGCGGTAGCCGCGGCAGCGGGGAAAATGTT
TATGTTTTCGGCTTGATGCGTTTGCAGAATGCAGGCAGCCTCATCGCCCT
CGTGCTCCAACACGCGCGTGCCGCGCATGGTGTTGTTATGTAGCTGTAAC
GTGCAAAACACGTTTTCTTTCTCCCCCGCGCCCTCCGCAGGTCCGGCAGA
ATCAGCGGTACCCCATACCCCGCCGTCACGCTTGGGTCGACAAAGTCGCT
CCTGGACAGCGGCAACGGTGTCAACAGCAGCAGCACCACCACCACCACCA
CCACCACCACCGAAATCAGTCGGCCGCAACAGAACGGCACCACAGCGTCC
GCAGCTTCTTCCTCTTCCTCCTCCCCCCCTCCTGCCAATTTCTCGACATC
CTCGACGTTCTCCTCCTCCTCCTCCTTCTCCTTCGCCCCCTCGCCGTCTG
TCAACAGCACCGGCTTCGGTTGCGCTTCTGGCCTGGCTTCCTCCGGCCTC
GCTGCTACCAGCCCCGCAAGCTTCGCCGAGGCCGGCAGTTACCCGCAGAG
CTTCGGGGGGCTGGAGCACAGCGGTAGCGGCAGCTCTTACCACCAGAGCC
GAGCCGCTGCCGGCTTCAATCCGTTCTCGGAGGATGATTTTTCGCGCGGC
GCAGCGTGGGGGGCGGGAAACCGCGCCGAGGGTAGTTACCTATGGCAGGC
TGGAGGCAGCGGCTTCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6534:9094..10312-

>mRNA_L-elsbetiae_contig6534.15234.1 ID=mRNA_L-elsbetiae_contig6534.15234.1|Name=mRNA_L-elsbetiae_contig6534.15234.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1884bp|location=Sequence derived from alignment at L-elsbetiae_contig6534:9094..10312- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGGCAGCAAGCGAAACCGGTGGGTGGCAACGACGCGGTCACGAGCCA
GACGACCAACCCTTTTCCCGGGTTCCTCTCGCCGGAGCAACCACCTTCAT
CTTTGCAGCTGCGATGGGGCGGCGTCGATGGCGGCGGCGGCGGCGGCGGT
GGCAAGCTCGGCGGGGAGGTGAAGCCCTGCCTCCCTCACCCCAGCCGCCT
GGTCGGCGGACAGCAACAGCAAGCGGCGGTAGCGGCAGGCCCTTCCTCGG
GACCTGAGAGCGCTACGGGTCCGATCTGTACTCTGCCGCTTTCTACAGGC
GCGTTTCCATCGGGGCCCTCCGGTGACAGCAGCGGCAGCGGCAGCAGCTC
CAACTTTGGATATGGGTTCGCCCCCAACCCGTACCATTCTGCTCGTGCGG
CTTCCGGTATCTGCAGCGGCAGCAAGCGAAACCGGTGGGTGGCAACGACG
CGGTCACGAGCCAGACGACCAACCCTTTTCCCGGGTTCCTCTCGCCGGAG
CAACCACCTTCATCTTTGCAGCTGCGATGGGGCGGCGTCGATGGCGGCGG
CGGCGGCGGCGGTGGCAAGCTCGGCGGGGAGGTGAAGCCCTGCCTCCCTC
ACCCCAGCCGCCTGGTCGGCGGACAGCAACAGCAAGCGGCGGTAGCGGCA
GGCCCTTCCTCGGGACCTGAGAGCGCTACGGGTCCGATCTGTACTCTGCC
GCTTTCTACAGGCGCGTTTCCATCGGGGCCCTCCGGTGACAGCAGCGGCA
GCGGCAGCAGCTCCAACTTTGGATATGGGTTCGCCCCCAACCCGTACCAT
TCTGCTCGTGCGGCTTCCGGTATCTGGTCCGGCAGAATCAGCGGTACCCC
ATACCCCGCCGTCACGCTTGGGTCGACAAAGTCGCTCCTGGACAGCGGCA
ACGGTGTCAACAGCAGCAGCACCACCACCACCACCACCACCACCACCGAA
ATCAGTCGGCCGCAACAGAACGGCACCACAGCGTCCGCAGCTTCTTCCTC
TTCCTCCTCCCCCCCTCCTGCCAATTTCTCGACATCCTCGACGTTCTCCT
CCTCCTCCTCCTTCTCCTTCGCCCCCTCGCCGTCTGTCAACAGCACCGGC
TTCGGTTGCGCTTCTGGCCTGGCTTCCTCCGGCCTCGCTGCTACCAGCCC
CGCAAGCTTCGCCGAGGCCGGCAGTTACCCGCAGAGCTTCGGGGGGCTGG
AGCACAGCGGTAGCGGCAGCTCTTACCACCAGAGCCGAGCCGCTGCCGGC
TTCAATCCGTTCTCGGAGGATGATTTTTCGCGCGGCGCAGCGTGGGGGGC
GGGAAACCGCGCCGAGGGTAGTTACCTATGGCAGGCTGGAGGCAGCGGCT
TCGAGGTCCGGCAGAATCAGCGGTACCCCATACCCCGCCGTCACGCTTGG
GTCGACAAAGTCGCTCCTGGACAGCGGCAACGGTGTCAACAGCAGCAGCA
CCACCACCACCACCACCACCACCACCGAAATCAGTCGGCCGCAACAGAAC
GGCACCACAGCGTCCGCAGCTTCTTCCTCTTCCTCCTCCCCCCCTCCTGC
CAATTTCTCGACATCCTCGACGTTCTCCTCCTCCTCCTCCTTCTCCTTCG
CCCCCTCGCCGTCTGTCAACAGCACCGGCTTCGGTTGCGCTTCTGGCCTG
GCTTCCTCCGGCCTCGCTGCTACCAGCCCCGCAAGCTTCGCCGAGGCCGG
CAGTTACCCGCAGAGCTTCGGGGGGCTGGAGCACAGCGGTAGCGGCAGCT
CTTACCACCAGAGCCGAGCCGCTGCCGGCTTCAATCCGTTCTCGGAGGAT
GATTTTTCGCGCGGCGCAGCGTGGGGGGCGGGAAACCGCGCCGAGGGTAG
TTACCTATGGCAGGCTGGAGGCAGCGGCTTCGAG
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