mRNA_L-elsbetiae_contig6533.15232.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6533.15232.1
Unique NamemRNA_L-elsbetiae_contig6533.15232.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6533.15232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6533contigL-elsbetiae_contig6533:5208..7358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1066
Cds size1065
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.5743654-CDS-L-elsbetiae_contig6533:5207..53871622816721.5743654-CDS-L-elsbetiae_contig6533:5207..5387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6533 5208..5387 +
1691683764.8261304-CDS-L-elsbetiae_contig6533:5207..53871691683764.8261304-CDS-L-elsbetiae_contig6533:5207..5387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6533 5208..5387 +
1622816721.5844135-CDS-L-elsbetiae_contig6533:6473..73581622816721.5844135-CDS-L-elsbetiae_contig6533:6473..7358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6533 6474..7358 +
1691683764.8377504-CDS-L-elsbetiae_contig6533:6473..73581691683764.8377504-CDS-L-elsbetiae_contig6533:6473..7358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6533 6474..7358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6533.15232.1prot_L-elsbetiae_contig6533.15232.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6533 5208..7358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6533.15232.1

>prot_L-elsbetiae_contig6533.15232.1 ID=prot_L-elsbetiae_contig6533.15232.1|Name=mRNA_L-elsbetiae_contig6533.15232.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=355bp
MARKKFVGRRRKGVDDDDDVQFIGCSKRKLDDFQDVSDVCLDVDFSQGAH
HDSASKWRRTDAGKAAPDHHHYHHDNDYGASNNNCAGSPHRTPTLFTPAA
LKATREYQQAIQTIVAFGWGSAAVEAGAEEPQARETDRTNERLRKFEEDL
RESEERLRADQERLDEARERKDDIAEDARGAVEHAVVAAGLLVKLEQRSA
ESARARAEAAAPVQGCKLELGRRREQAASLGAAKSAYIDTLPAVYRDLNE
EQGVSNAVRELDSAYEDAVAAVLSRHTEIERGGLAYADYADWLDSSLGRS
RDRLHERAEELEGRGELSPEDVQLVKQTVSDAEDQCCLGRKDWPGCAWGT
QVRDE
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mRNA from alignment at L-elsbetiae_contig6533:5208..7358+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6533.15232.1 ID=mRNA_L-elsbetiae_contig6533.15232.1|Name=mRNA_L-elsbetiae_contig6533.15232.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2151bp|location=Sequence derived from alignment at L-elsbetiae_contig6533:5208..7358+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCACGAAAAAAGTTCGTGGGCAGGAGGAGGAAGGGCGTCGACGACGA
CGACGACGTCCAGTTCATCGGTTGTTCCAAGAGGAAGCTCGACGATTTCC
AAGACGTCAGCGATGTCTGCCTGGACGTTGACTTCTCCCAGGGCGCGCAT
CACGATTCAGCATCCAAGTGGCGTCGCACGGTGAGTGATCTCTAGTGCAT
CCAGCATTTCCCAAAACGAGCCCGTTCTCGCTCAGTCTACATAAGGAAGG
CAGGGAATTACCGTCTGAAAATATCTACATAATATCTATGTGAGCTACAA
GAGAGATGCTTGTCCCTCTGAACCTCTCTTTGACTCGCGGTTCGCGCACG
GCCAAGGGGGCTATGGACAGGCGCGGCAGACATTTACATCACGCAATGTC
ACTCTCATATTCCTCGCCTGCTCTCTCTCTCTCTCCCTCTCTTTCTCTCT
TCCCTATTGCAGAACTCGAGAAAATCATCGGTGAAGTAGCTCGTCGAGAA
GAATAATAAAAAATGCGGCGTTGACTCGTCGGCAACTGGATCTCATTTTC
GACTTGGATCATGGCATGTGACTGTCCGTGACAACCTTTCCAGCTGCTTT
CTTGTTCAAGGAAGGGCACTCGGTGCAGAAGTGCCTGCGAGCGACAATCA
TAATCGCATCCAGTCGCATGGTATCGCGTGCGAGAGGGAAGTGCACCAAA
CACTCCCTCGTGCTTGCCGTTACATGTACTTGTTGAACTCTTTTGTTGTG
TGTGCATGTGCCTATTTTGGGGATGCGAGGTGATGGAGTTTCGATCTAAT
GGGTGCGTCCAGCGGGGAATGTGAAACAATAGGTCTCGCTTTCAGCCGCG
CGTAATAGTTTATTCTATTGTTGTACGTACATGCCAATTGTTTGGGCTTT
GCCCGGGAATTGTAGGCGAGCTACTCTGTACAGCTCTACGGGACGCGCGT
ATGTGCCGTTGGAGTCTATTTTTCTCTCTTGGCATGTTTCTGTGCAACGA
ATCCCGGGTAGAGACTATTGGTAACATATTCACATGTAGCCATAGAGGGC
TCGCACTCAAAAGATAGTATGTATCTATCTGCTTCGTTTGTCTTGTCGAA
AGTGTGCTGCTGCTACCCCCCCGCTGCTGGCCCCTGCTGGTACCGGCGCT
GCGGCAGCTGGGACAGAACTTTGCCGCAAATGAGTCATCACCCGATCAAG
CTCTTGAAATTATCCCTCGTTCTTGCACTCTGCCCGCCCTCACTTCTTTA
TTTCAACGAAACCCAGGACGCCGGCAAGGCGGCCCCCGACCACCACCACT
ACCACCACGACAACGACTACGGCGCCAGCAACAACAACTGCGCCGGATCG
CCGCACCGAACCCCCACGCTGTTCACGCCCGCGGCGCTCAAGGCCACTCG
AGAGTATCAGCAGGCCATTCAGACGATCGTTGCGTTCGGCTGGGGGTCCG
CGGCTGTCGAGGCGGGCGCGGAGGAGCCCCAGGCCCGCGAAACCGACCGC
ACCAATGAGCGCCTCCGCAAGTTCGAAGAGGACCTCCGCGAGTCTGAAGA
GCGCCTCCGCGCCGACCAGGAGCGCCTAGACGAGGCTAGGGAGAGGAAGG
ACGATATCGCCGAAGACGCCAGGGGCGCCGTGGAACACGCCGTGGTTGCA
GCTGGGCTCTTGGTGAAGCTTGAGCAAAGGTCTGCTGAGTCCGCGAGGGC
TCGCGCAGAGGCAGCAGCCCCCGTCCAGGGCTGCAAGCTCGAGCTGGGGC
GTCGGCGAGAGCAGGCGGCATCCCTCGGGGCCGCCAAGAGCGCGTACATC
GACACGCTTCCCGCCGTCTACCGCGACCTCAACGAGGAGCAGGGCGTGTC
GAATGCCGTCCGAGAACTCGACAGCGCTTACGAGGACGCTGTTGCGGCCG
TCCTCAGCCGGCACACAGAGATCGAGCGAGGGGGGCTTGCCTACGCGGAC
TACGCAGACTGGCTCGACTCCTCCCTAGGCCGATCGCGGGACCGCCTCCA
CGAGCGCGCCGAGGAGCTGGAAGGGAGGGGCGAGCTGTCTCCCGAGGACG
TCCAGCTCGTCAAGCAAACGGTGTCGGACGCGGAAGACCAGTGCTGCCTG
GGAAGGAAGGACTGGCCAGGATGCGCCTGGGGCACGCAAGTACGGGACGA
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6533:5208..7358+

>mRNA_L-elsbetiae_contig6533.15232.1 ID=mRNA_L-elsbetiae_contig6533.15232.1|Name=mRNA_L-elsbetiae_contig6533.15232.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2130bp|location=Sequence derived from alignment at L-elsbetiae_contig6533:5208..7358+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCACGAAAAAAGTTCGTGGGCAGGAGGAGGAAGGGCGTCGACGACGA
CGACGACGTCCAGTTCATCGGTTGTTCCAAGAGGAAGCTCGACGATTTCC
AAGACGTCAGCGATGTCTGCCTGGACGTTGACTTCTCCCAGGGCGCGCAT
CACGATTCAGCATCCAAGTGGCGTCGCACGATGGCACGAAAAAAGTTCGT
GGGCAGGAGGAGGAAGGGCGTCGACGACGACGACGACGTCCAGTTCATCG
GTTGTTCCAAGAGGAAGCTCGACGATTTCCAAGACGTCAGCGATGTCTGC
CTGGACGTTGACTTCTCCCAGGGCGCGCATCACGATTCAGCATCCAAGTG
GCGTCGCACGGACGCCGGCAAGGCGGCCCCCGACCACCACCACTACCACC
ACGACAACGACTACGGCGCCAGCAACAACAACTGCGCCGGATCGCCGCAC
CGAACCCCCACGCTGTTCACGCCCGCGGCGCTCAAGGCCACTCGAGAGTA
TCAGCAGGCCATTCAGACGATCGTTGCGTTCGGCTGGGGGTCCGCGGCTG
TCGAGGCGGGCGCGGAGGAGCCCCAGGCCCGCGAAACCGACCGCACCAAT
GAGCGCCTCCGCAAGTTCGAAGAGGACCTCCGCGAGTCTGAAGAGCGCCT
CCGCGCCGACCAGGAGCGCCTAGACGAGGCTAGGGAGAGGAAGGACGATA
TCGCCGAAGACGCCAGGGGCGCCGTGGAACACGCCGTGGTTGCAGCTGGG
CTCTTGGTGAAGCTTGAGCAAAGGTCTGCTGAGTCCGCGAGGGCTCGCGC
AGAGGCAGCAGCCCCCGTCCAGGGCTGCAAGCTCGAGCTGGGGCGTCGGC
GAGAGCAGGCGGCATCCCTCGGGGCCGCCAAGAGCGCGTACATCGACACG
CTTCCCGCCGTCTACCGCGACCTCAACGAGGAGCAGGGCGTGTCGAATGC
CGTCCGAGAACTCGACAGCGCTTACGAGGACGCTGTTGCGGCCGTCCTCA
GCCGGCACACAGAGATCGAGCGAGGGGGGCTTGCCTACGCGGACTACGCA
GACTGGCTCGACTCCTCCCTAGGCCGATCGCGGGACCGCCTCCACGAGCG
CGCCGAGGAGCTGGAAGGGAGGGGCGAGCTGTCTCCCGAGGACGTCCAGC
TCGTCAAGCAAACGGTGTCGGACGCGGAAGACCAGTGCTGCCTGGGAAGG
AAGGACTGGCCAGGATGCGCCTGGGGCACGCAAGTACGGGACGAGGACGC
CGGCAAGGCGGCCCCCGACCACCACCACTACCACCACGACAACGACTACG
GCGCCAGCAACAACAACTGCGCCGGATCGCCGCACCGAACCCCCACGCTG
TTCACGCCCGCGGCGCTCAAGGCCACTCGAGAGTATCAGCAGGCCATTCA
GACGATCGTTGCGTTCGGCTGGGGGTCCGCGGCTGTCGAGGCGGGCGCGG
AGGAGCCCCAGGCCCGCGAAACCGACCGCACCAATGAGCGCCTCCGCAAG
TTCGAAGAGGACCTCCGCGAGTCTGAAGAGCGCCTCCGCGCCGACCAGGA
GCGCCTAGACGAGGCTAGGGAGAGGAAGGACGATATCGCCGAAGACGCCA
GGGGCGCCGTGGAACACGCCGTGGTTGCAGCTGGGCTCTTGGTGAAGCTT
GAGCAAAGGTCTGCTGAGTCCGCGAGGGCTCGCGCAGAGGCAGCAGCCCC
CGTCCAGGGCTGCAAGCTCGAGCTGGGGCGTCGGCGAGAGCAGGCGGCAT
CCCTCGGGGCCGCCAAGAGCGCGTACATCGACACGCTTCCCGCCGTCTAC
CGCGACCTCAACGAGGAGCAGGGCGTGTCGAATGCCGTCCGAGAACTCGA
CAGCGCTTACGAGGACGCTGTTGCGGCCGTCCTCAGCCGGCACACAGAGA
TCGAGCGAGGGGGGCTTGCCTACGCGGACTACGCAGACTGGCTCGACTCC
TCCCTAGGCCGATCGCGGGACCGCCTCCACGAGCGCGCCGAGGAGCTGGA
AGGGAGGGGCGAGCTGTCTCCCGAGGACGTCCAGCTCGTCAAGCAAACGG
TGTCGGACGCGGAAGACCAGTGCTGCCTGGGAAGGAAGGACTGGCCAGGA
TGCGCCTGGGGCACGCAAGTACGGGACGAG
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