mRNA_L-elsbetiae_contig6532.15229.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6532.15229.1
Unique NamemRNA_L-elsbetiae_contig6532.15229.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6532.15229.1 vs. uniprot
Match: D8LBQ4_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBQ4_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 1.250e-46
Identity = 89/134 (66.42%), Postives = 98/134 (73.13%), Query Frame = 1
Query:    1 KIIFEGDEKRGRPDIGDVVRIHYTCALQKDD------NGRRRG----------------------ESSRRNRRRPLEFVVGAEQVVKGIDRSIRQMLHGERARVFVTARYAYGERGHPPTVPPNAALVFDVNLL 318
            +IIFEG+EKRGRPDIGDVVRIHYTCALQ+        + RR G                      ESSR++RRRPLEFVVGA QVVKGIDRSIRQMLHGERARVFVTA Y YG++GHPPT+PP AALVFDVNLL
Sbjct:  382 EIIFEGEEKRGRPDIGDVVRIHYTCALQESGGSGSGRSSRRSGGSHAVSGYGSSGNDGGGDAGVVESSRKHRRRPLEFVVGAGQVVKGIDRSIRQMLHGERARVFVTALYGYGDKGHPPTIPPRAALVFDVNLL 515          
BLAST of mRNA_L-elsbetiae_contig6532.15229.1 vs. uniprot
Match: A0A836CB63_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB63_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.100e-25
Identity = 57/106 (53.77%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    1 KIIFEGDEKRGRPDIGDVVRIHYTCALQKDDNGRRRGESSRRNRRRPLEFVVGAEQVVKGIDRSIRQMLHGERARVFVTARYAYGERGHPPTVPPNAALVFDVNLL 318
            +++F GD    RP+ GDVV  HYTC L+   +G    ES+R+ RR   EFV+GA  V++G+DR + +M  GERAR+ V+A YAYGERG PP +PP AALVFDVNL+
Sbjct:  322 EVMFAGDAD-DRPEDGDVV--HYTCTLR---DGGAVVESTRKTRRCAFEFVLGAGAVIRGLDRGVARMAFGERARITVSAEYAYGERGFPPIIPPGAALVFDVNLI 421          
BLAST of mRNA_L-elsbetiae_contig6532.15229.1 vs. uniprot
Match: F0Y506_AURAN (Peptidylprolyl isomerase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y506_AURAN)

HSP 1 Score: 93.6 bits (231), Expect = 1.110e-22
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 1
Query:    1 KIIFEGDEKRGRPDIGDVVRIHYTCALQKDDNGRRRGESSRRNRRRPLEFVVGAEQVVKGIDRSIRQMLHGERARVFVTARYAYGERGHPPTVPPNAALVFDVNLL 318
            +++F GDE+   P IGDVVR HY C L    +G +  E++R+++R   EFV+G  QV++G DR + QM  GER+++ ++  Y YG  G  P +PPNA L+FD+ LL
Sbjct:    4 EVLFPGDEET-YPQIGDVVRCHYVCKLH---DGGKEIENTRKSKR-TFEFVLGIGQVIRGWDRGVLQMSFGERSKLTISPEYGYGSDGVKPLIPPNAKLIFDLELL 104          
BLAST of mRNA_L-elsbetiae_contig6532.15229.1 vs. uniprot
Match: A0A5N5QL43_9AGAM (Peptidylprolyl isomerase n=1 Tax=Ceratobasidium theobromae TaxID=1582974 RepID=A0A5N5QL43_9AGAM)

HSP 1 Score: 88.6 bits (218), Expect = 2.450e-20
Identity = 45/95 (47.37%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   46 GDVVRIHYTCALQKD----DNGRRRGESSRRNRRRPLEFVVGAEQVVKGIDRSIRQMLHGERARVFVTARYAYGERGHPPTVPPNAALVFDVNLL 318
            GDV+R+HYT   Q D    D+ R RG         P EF +GA QV++G D+ ++ M  GER ++ +   YAYG RG+PP +PPNA LVFDV LL
Sbjct:   45 GDVLRMHYTAIFQADGKTFDSSRERGS--------PFEFKLGAGQVIRGWDQGLQGMAVGERRKLVLPPAYAYGPRGYPPEIPPNATLVFDVELL 131          
BLAST of mRNA_L-elsbetiae_contig6532.15229.1 vs. uniprot
Match: A0A8C2NZ61_CAPHI (Peptidylprolyl isomerase n=1 Tax=Capra hircus TaxID=9925 RepID=A0A8C2NZ61_CAPHI)

HSP 1 Score: 86.7 bits (213), Expect = 6.110e-20
Identity = 48/106 (45.28%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    1 KIIFEGDEKRGRPDIGDVVRIHYTCALQKDDNGRRRGESSRRNRRRPLEFVVGAEQVVKGIDRSIRQMLHGERARVFVTARYAYGERGHPPTVPPNAALVFDVNLL 318
            K I  GD  R  P  G    +HYT  LQ   +G++   S  R+R +P +FV+G +QV++G +  I QM  G+RA++ V+  YAYG RGHP  +PPNA L+FDV LL
Sbjct:    4 KTISPGDG-RTFPQHGQTCVVHYTGTLQ---DGKKFDSS--RDRNKPFKFVLGKKQVIRGWEEGIAQMSVGQRAKLTVSPDYAYGSRGHPGIIPPNATLIFDVELL 103          
BLAST of mRNA_L-elsbetiae_contig6532.15229.1 vs. uniprot
Match: A0A0E9NCV8_SAICN (Peptidylprolyl isomerase n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NCV8_SAICN)

HSP 1 Score: 87.0 bits (214), Expect = 9.340e-20
Identity = 45/105 (42.86%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    4 IIFEGDEKRGRPDIGDVVRIHYTCALQKDDNGRRRGESSRRNRRRPLEFVVGAEQVVKGIDRSIRQMLHGERARVFVTARYAYGERGHPPTVPPNAALVFDVNLL 318
            +I  GDE   RP++GD V +HYT  L+   +G++   S   +R +P +  +G  QV++G D  + QM  GE+A++ +T  YAYG+RG+P  +PPNA L+FDV LL
Sbjct:   30 VISPGDETN-RPNVGDEVTMHYTGTLE---SGKKFDSSV--DRGQPFKCRIGVGQVIRGWDEGVPQMSLGEKAKLTITGDYAYGQRGYPGLIPPNATLIFDVELL 128          
BLAST of mRNA_L-elsbetiae_contig6532.15229.1 vs. uniprot
Match: A0A642UF93_DIURU (Peptidylprolyl isomerase n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642UF93_DIURU)

HSP 1 Score: 86.7 bits (213), Expect = 1.260e-19
Identity = 49/105 (46.67%), Postives = 65/105 (61.90%), Query Frame = 1
Query:    4 IIFEGDEKRGRPDIGDVVRIHYTCALQKDDNGRRRGESSRRNRRRPLEFVVGAEQVVKGIDRSIRQMLHGERARVFVTARYAYGERGHPPTVPPNAALVFDVNLL 318
            II EGD K   P  GD V IHYT  L   DNG++   S  R+R +P + V+G  QV++G D+ I Q+  G +A++ +    AYG RG PP +PPNA L+FDV LL
Sbjct:   32 IIKEGDGKTF-PKPGDTVTIHYTGTL---DNGKKFDSS--RDRGKPFQCVIGQGQVIQGWDKGIPQLSKGTQAQLTIPGHEAYGARGFPPIIPPNATLIFDVELL 130          
BLAST of mRNA_L-elsbetiae_contig6532.15229.1 vs. uniprot
Match: A0A8B7Z0S6_ACAPL (Peptidylprolyl isomerase n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Z0S6_ACAPL)

HSP 1 Score: 85.9 bits (211), Expect = 1.300e-19
Identity = 48/106 (45.28%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    1 KIIFEGDEKRGRPDIGDVVRIHYTCALQKDDNGRRRGESSRRNRRRPLEFVVGAEQVVKGIDRSIRQMLHGERARVFVTARYAYGERGHPPTVPPNAALVFDVNLL 318
            ++I EG  +   P  G  V +HYT  LQ   NG++   S  R+R +P EF +G  QV+KG D  + QM  GERA +     YAYG  GHP  +PPNA L+FDV LL
Sbjct:    6 EVITEGKGET-YPKTGQTVIVHYTGTLQ---NGKKFDSS--RDRSKPFEFKIGMGQVIKGWDEGVAQMSVGERALLTCPPEYAYGAAGHPGVIPPNATLIFDVELL 105          
BLAST of mRNA_L-elsbetiae_contig6532.15229.1 vs. uniprot
Match: W5Q3X2_SHEEP (Peptidylprolyl isomerase n=3 Tax=Caprinae TaxID=9963 RepID=W5Q3X2_SHEEP)

HSP 1 Score: 85.1 bits (209), Expect = 2.600e-19
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 1
Query:   37 PDIGDVVRIHYTCALQKDDNGRRRGESSRRNRRRPLEFVVGAEQVVKGIDRSIRQMLHGERARVFVTARYAYGERGHPPTVPPNAALVFDVNLL 318
            P  G    +HYT  LQ   +G++   S  R+R +P +FV+G +QV++G +  I QM  G+RA++ V+  YAYG RGHP  +PPNA L+FDV LL
Sbjct:   17 PQHGQTCVVHYTGTLQ---DGKKFDSS--RDRNKPFKFVLGKKQVIRGWEEGIAQMSVGQRAKLTVSPDYAYGSRGHPGIIPPNATLIFDVELL 105          
BLAST of mRNA_L-elsbetiae_contig6532.15229.1 vs. uniprot
Match: A0A834XXD3_9HYME (Peptidylprolyl isomerase n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=A0A834XXD3_9HYME)

HSP 1 Score: 85.1 bits (209), Expect = 2.600e-19
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    1 KIIFEGDEKRGRPDIGDVVRIHYTCALQKDDNGRRRGESSRRNRRRPLEFVVGAEQVVKGIDRSIRQMLHGERARVFVTARYAYGERGHPPTVPPNAALVFDVNLL 318
            +++  GD +R  P  G  V +HYT  L    NG++   S  R+R +P +F +G  +V+KG D+ + QM  GERAR+  +  +AYG +GHP  +PPNA L+FDV L+
Sbjct:    6 EVLSPGDGQR-YPKTGQTVIVHYTGTLT---NGKKFDSS--RDRNKPFQFKIGKGEVIKGWDQGVAQMSIGERARLTCSPDFAYGAQGHPGVIPPNATLIFDVELI 105          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6532.15229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBQ4_ECTSI1.250e-4666.42Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CB63_9STRA1.100e-2553.77Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
F0Y506_AURAN1.110e-2244.34Peptidylprolyl isomerase (Fragment) n=1 Tax=Aureoc... [more]
A0A5N5QL43_9AGAM2.450e-2047.37Peptidylprolyl isomerase n=1 Tax=Ceratobasidium th... [more]
A0A8C2NZ61_CAPHI6.110e-2045.28Peptidylprolyl isomerase n=1 Tax=Capra hircus TaxI... [more]
A0A0E9NCV8_SAICN9.340e-2042.86Peptidylprolyl isomerase n=1 Tax=Saitoella complic... [more]
A0A642UF93_DIURU1.260e-1946.67Peptidylprolyl isomerase n=1 Tax=Diutina rugosa Ta... [more]
A0A8B7Z0S6_ACAPL1.300e-1945.28Peptidylprolyl isomerase n=1 Tax=Acanthaster planc... [more]
W5Q3X2_SHEEP2.600e-1945.74Peptidylprolyl isomerase n=3 Tax=Caprinae TaxID=99... [more]
A0A834XXD3_9HYME2.600e-1941.51Peptidylprolyl isomerase n=1 Tax=Aphidius gifuensi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6532contigL-elsbetiae_contig6532:4313..4687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.1
Seed ortholog evalue1.1e-39
Seed eggNOG ortholog2880.D8LBQ4
KEGG koko:K09572
Hectar predicted targeting categoryother localisation
EggNOG free text desc.FK506 binding
EggNOG OGsCOG0545@1,KOG0543@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.38247-CDS-L-elsbetiae_contig6532:4312..45181622816721.38247-CDS-L-elsbetiae_contig6532:4312..4518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6532 4313..4518 -
1691683764.7020676-CDS-L-elsbetiae_contig6532:4312..45181691683764.7020676-CDS-L-elsbetiae_contig6532:4312..4518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6532 4313..4518 -
1622816721.3925457-CDS-L-elsbetiae_contig6532:4575..46871622816721.3925457-CDS-L-elsbetiae_contig6532:4575..4687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6532 4576..4687 -
1691683764.7155418-CDS-L-elsbetiae_contig6532:4575..46871691683764.7155418-CDS-L-elsbetiae_contig6532:4575..4687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6532 4576..4687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6532.15229.1prot_L-elsbetiae_contig6532.15229.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6532 4313..4687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6532.15229.1

>prot_L-elsbetiae_contig6532.15229.1 ID=prot_L-elsbetiae_contig6532.15229.1|Name=mRNA_L-elsbetiae_contig6532.15229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
KIIFEGDEKRGRPDIGDVVRIHYTCALQKDDNGRRRGESSRRNRRRPLEF
VVGAEQVVKGIDRSIRQMLHGERARVFVTARYAYGERGHPPTVPPNAALV
FDVNLL
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mRNA from alignment at L-elsbetiae_contig6532:4313..4687-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6532.15229.1 ID=mRNA_L-elsbetiae_contig6532.15229.1|Name=mRNA_L-elsbetiae_contig6532.15229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=375bp|location=Sequence derived from alignment at L-elsbetiae_contig6532:4313..4687- (Laminarionema elsbetiae ELsaHSoW15)
AAGATTATTTTTGAGGGAGACGAGAAGCGTGGACGGCCCGACATCGGCGA CGTCGTCCGCATCCACTACACCTGCGCGCTGCAGAAAGACGACAACGGCA GGCGCCGCGGCGGTGCCGGTGTTGCCCCCGGTAACAAAAGGGAGGACGAC GGCGGCACCGTCGTCATAGAAAGCTCCCGCAGAAATCGGCGACGGCCCCT CGAGTTCGTCGTCGGGGCGGAGCAGGTGGTGAAAGGGATCGACCGCTCGA TCCGGCAGATGCTGCACGGGGAGCGGGCGAGGGTTTTCGTGACCGCACGG TACGCCTACGGGGAGAGGGGGCACCCGCCGACGGTCCCGCCCAACGCGGC CCTCGTGTTCGACGTCAACTTGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6532:4313..4687-

>mRNA_L-elsbetiae_contig6532.15229.1 ID=mRNA_L-elsbetiae_contig6532.15229.1|Name=mRNA_L-elsbetiae_contig6532.15229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig6532:4313..4687- (Laminarionema elsbetiae ELsaHSoW15)
AAGATTATTTTTGAGGGAGACGAGAAGCGTGGACGGCCCGACATCGGCGA
CGTCGTCCGCATCCACTACACCTGCGCGCTGCAGAAAGACGACAACGGCA
GGCGCCGCGGCGAAGATTATTTTTGAGGGAGACGAGAAGCGTGGACGGCC
CGACATCGGCGACGTCGTCCGCATCCACTACACCTGCGCGCTGCAGAAAG
ACGACAACGGCAGGCGCCGCGGCGAAAGCTCCCGCAGAAATCGGCGACGG
CCCCTCGAGTTCGTCGTCGGGGCGGAGCAGGTGGTGAAAGGGATCGACCG
CTCGATCCGGCAGATGCTGCACGGGGAGCGGGCGAGGGTTTTCGTGACCG
CACGGTACGCCTACGGGGAGAGGGGGCACCCGCCGACGGTCCCGCCCAAC
GCGGCCCTCGTGTTCGACGTCAACTTGCTGAAAGCTCCCGCAGAAATCGG
CGACGGCCCCTCGAGTTCGTCGTCGGGGCGGAGCAGGTGGTGAAAGGGAT
CGACCGCTCGATCCGGCAGATGCTGCACGGGGAGCGGGCGAGGGTTTTCG
TGACCGCACGGTACGCCTACGGGGAGAGGGGGCACCCGCCGACGGTCCCG
CCCAACGCGGCCCTCGTGTTCGACGTCAACTTGCTG
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