mRNA_L-elsbetiae_contig653.15226.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig653.15226.1
Unique NamemRNA_L-elsbetiae_contig653.15226.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig653.15226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig653contigL-elsbetiae_contig653:24357..24689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size318
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.1094804-UTR-L-elsbetiae_contig653:24356..243711622816721.1094804-UTR-L-elsbetiae_contig653:24356..24371Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig653 24357..24371 +
1691683764.514512-UTR-L-elsbetiae_contig653:24356..243711691683764.514512-UTR-L-elsbetiae_contig653:24356..24371Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig653 24357..24371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.1212614-CDS-L-elsbetiae_contig653:24371..246891622816721.1212614-CDS-L-elsbetiae_contig653:24371..24689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig653 24372..24689 +
1691683764.5234232-CDS-L-elsbetiae_contig653:24371..246891691683764.5234232-CDS-L-elsbetiae_contig653:24371..24689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig653 24372..24689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig653.15226.1prot_L-elsbetiae_contig653.15226.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig653 24372..24689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig653.15226.1

>prot_L-elsbetiae_contig653.15226.1 ID=prot_L-elsbetiae_contig653.15226.1|Name=mRNA_L-elsbetiae_contig653.15226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MTLNKENTRAIPRLERSPTRQPLQRQRPSLQTGRRPQITNYKHHVSGLGS
CFHTHKHTRHIPQLRKNRAPFFSRKYHSDPHQQEKGQGILAHIWCLLPPP
LPFSE*
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mRNA from alignment at L-elsbetiae_contig653:24357..24689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig653.15226.1 ID=mRNA_L-elsbetiae_contig653.15226.1|Name=mRNA_L-elsbetiae_contig653.15226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=333bp|location=Sequence derived from alignment at L-elsbetiae_contig653:24357..24689+ (Laminarionema elsbetiae ELsaHSoW15)
AACAACAGACAGTGGATGACTCTCAACAAAGAAAACACACGCGCAATCCC
CCGCCTCGAGAGAAGCCCCACGCGACAGCCGCTCCAGCGGCAGCGACCAT
CCCTGCAGACCGGCCGGCGACCACAAATTACAAATTACAAACACCATGTG
TCTGGGCTGGGTTCGTGTTTCCATACACACAAACACACAAGACACATCCC
ACAATTGCGCAAAAACCGCGCACCCTTCTTCTCGCGGAAATATCACTCTG
ATCCGCACCAGCAGGAAAAAGGGCAGGGTATTCTAGCACACATTTGGTGT
CTTCTCCCCCCCCCCCTCCCTTTTTCCGAATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig653:24357..24689+

>mRNA_L-elsbetiae_contig653.15226.1 ID=mRNA_L-elsbetiae_contig653.15226.1|Name=mRNA_L-elsbetiae_contig653.15226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig653:24357..24689+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTCTCAACAAAGAAAACACACGCGCAATCCCCCGCCTCGAGAGAAG
CCCCACGCGACAGCCGCTCCAGCGGCAGCGACCATCCCTGCAGACCGGCC
GGCGACCACAAATTACAAATTACAAACACCATGTGTCTGGGCTGGGTTCG
TGTTTCCATACACACAAACACACAAGACACATCCCACAATTGCGCAAAAA
CCGCGCACCCTTCTTCTCGCGGAAATATCACTCTGATCCGCACCAGCAGG
AAAAAGGGCAGGGTATTCTAGCACACATTTGGTGTCTTCTCCCCCCCCCC
CTCCCTTTTTCCGAATAAATGACTCTCAACAAAGAAAACACACGCGCAAT
CCCCCGCCTCGAGAGAAGCCCCACGCGACAGCCGCTCCAGCGGCAGCGAC
CATCCCTGCAGACCGGCCGGCGACCACAAATTACAAATTACAAACACCAT
GTGTCTGGGCTGGGTTCGTGTTTCCATACACACAAACACACAAGACACAT
CCCACAATTGCGCAAAAACCGCGCACCCTTCTTCTCGCGGAAATATCACT
CTGATCCGCACCAGCAGGAAAAAGGGCAGGGTATTCTAGCACACATTTGG
TGTCTTCTCCCCCCCCCCCTCCCTTTTTCCGAATAA
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