mRNA_L-elsbetiae_contig6529.15225.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6529.15225.1
Unique NamemRNA_L-elsbetiae_contig6529.15225.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6529.15225.1 vs. uniprot
Match: D8LKH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH5_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 8.940e-56
Identity = 99/140 (70.71%), Postives = 111/140 (79.29%), Query Frame = 3 
Query:  630 ILRQVIDVLTDPASAGQGGRPDEPLLLVRKLALDETDAVFGAFESRFLRYAADAGSWSPLPGGFNRWMERYHREVLRGSRPVLVTVHGDDVCALEKELSLKAR--TEAAGVSVADNIEGATVGEEPSAATLAQTRRQGTD 1043
            +LRQV+ VLTDP SAG GGRPDEPLLLV+KLALDETDA+FGAFE RFL YAADAGSWSPLPGGF+RW+ RYHR  L GSRPVL TVHGDDVCALEKEL L  R  +EA GV+  D I+   + EEP A+  A  RRQ T+
Sbjct:    1 MLRQVVKVLTDPTSAGLGGRPDEPLLLVQKLALDETDAIFGAFEPRFLGYAADAGSWSPLPGGFSRWLARYHRVALHGSRPVLATVHGDDVCALEKELYLGVRVPSEAGGVTPNDIIDS--IAEEPPASASAGFRRQATN 138
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6529.15225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKH5_ECTSI8.940e-5670.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6529contigL-elsbetiae_contig6529:7604..10735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002980.1
Exons4
Model size1081
Cds size693
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6529.15225.1prot_L-elsbetiae_contig6529.15225.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6529 8829..10735 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.019812-UTR-L-elsbetiae_contig6529:7603..79701622816721.019812-UTR-L-elsbetiae_contig6529:7603..7970Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6529 7604..7970 +
1691683764.470434-UTR-L-elsbetiae_contig6529:7603..79701691683764.470434-UTR-L-elsbetiae_contig6529:7603..7970Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6529 7604..7970 +
1622816721.0394518-UTR-L-elsbetiae_contig6529:8809..88281622816721.0394518-UTR-L-elsbetiae_contig6529:8809..8828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6529 8810..8828 +
1691683764.478778-UTR-L-elsbetiae_contig6529:8809..88281691683764.478778-UTR-L-elsbetiae_contig6529:8809..8828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6529 8810..8828 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.0516863-CDS-L-elsbetiae_contig6529:8828..90831622816721.0516863-CDS-L-elsbetiae_contig6529:8828..9083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6529 8829..9083 +
1691683764.486631-CDS-L-elsbetiae_contig6529:8828..90831691683764.486631-CDS-L-elsbetiae_contig6529:8828..9083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6529 8829..9083 +
1622816721.064617-CDS-L-elsbetiae_contig6529:9564..98131622816721.064617-CDS-L-elsbetiae_contig6529:9564..9813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6529 9565..9813 +
1691683764.494906-CDS-L-elsbetiae_contig6529:9564..98131691683764.494906-CDS-L-elsbetiae_contig6529:9564..9813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6529 9565..9813 +
1622816721.0766814-CDS-L-elsbetiae_contig6529:10546..107351622816721.0766814-CDS-L-elsbetiae_contig6529:10546..10735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6529 10547..10735 +
1691683764.50604-CDS-L-elsbetiae_contig6529:10546..107351691683764.50604-CDS-L-elsbetiae_contig6529:10546..10735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6529 10547..10735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6529.15225.1

>prot_L-elsbetiae_contig6529.15225.1 ID=prot_L-elsbetiae_contig6529.15225.1|Name=mRNA_L-elsbetiae_contig6529.15225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=231bp
MNRAFQFNSRALLRATCLGAGAAVCSLFLAGSGSAPRDRGTPVAAINAGG
GVCSPLEVVGLDSCPDMKYQVVRKLLAAKADILRQVIDVLTDPASAGQGG
RPDEPLLLVRKLALDETDAVFGAFESRFLRYAADAGSWSPLPGGFNRWME
RYHREVLRGSRPVLVTVHGDDVCALEKELSLKARTEAAGVSVADNIEGAT
VGEEPSAATLAQTRRQGTDGGGGGGGGGGDH
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mRNA from alignment at L-elsbetiae_contig6529:7604..10735+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6529.15225.1 ID=mRNA_L-elsbetiae_contig6529.15225.1|Name=mRNA_L-elsbetiae_contig6529.15225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3132bp|location=Sequence derived from alignment at L-elsbetiae_contig6529:7604..10735+ (Laminarionema elsbetiae ELsaHSoW15)
CGCACCGATCTTGGCCGAATATGTCGCCCCATATAAAGCGTACATTCAAA
ATATATTTCTTAGATCGACCTCCCGCTAATTTTCCACCAAAAATCGAGAT
TCGGATCAAGATTGGTCTACCAAAGACATTAAGCGTTGGTCTAATCGTGG
TACAAACATTTTCTTTTGACCGGAATATGCCCTGGTAACATTTTCTTTCT
GCAACATTGTGAAGATATTTTTTCAAGATCCTCGCACTATAAACATTGGT
CTAAGTGGTCGAAGAAAGGCGGCGAAAACAAGGACGGGCTCTGCCTCTCG
TACCTCGTGGGAGTGCACGGGGCCGTGTCCATCGGGCGCCCCACTGGCAA
GAGCTCTCAGGGAGAAGGTATGTAAACATTTTCCTGTTTTTTCCTTCTTC
GTTGATCAGAGAGAAATCGTGCAGTGCTGTCGGGAAGCAAAAAATATGTT
TTTTGTATTTTCTCCTCGAATGACGCTCTCATTGCTGCAATGCCAACCAA
ACATCATGCTATAATCCGAATACAGCTTGACGATAAATACAGCAGCAGTG
CTCTGAACAACAACCAGACAGAGTTGCTGAATTACACCAGACAAAGTTGC
TGAATTACACTTATGTCTTGCGCATCGGTACGACAGTAGTTGGTCCATGT
CCCGCCTCCACAATTGTTTTTCCCTCCTACTATTGGCATTTTTGTCGTTT
GCGCCACTGGCCCCCTTCCTCCACTACGACTAGCTAGACAGCCCAACCGG
GGTCGCACAGGAGGGGGGGTTGGACCCCCTCCTGCAGTGCCTAGTTTAGA
TGCTTTTATCGCGCCTCCACATGTGCGTCGTGCAATACAGTTACCTCCAA
AAACTCCCAAGTTTTCCACACGGACTGCCTCGGGCGGTGCCTAACCAACC
CCTCCGGGGTGAAGGTGCTGCCCACTGCGACCACCGTCGCCCCAACTGCT
CTCGTGGGGATGCGTTTTGTACAACATCTGCTTTCCTTGTGCAGATGGGT
TCTGATATAGTAGTGTTGTTGTGTGAAAGACATCGTTCACACCGCGGACA
GCGTGTTGCGATTGTCGTTGTGTGTTGTGATGTGAGTTTGTGCTATCAAG
CATCTTTCGTTACCAAGGCACCCGCCCGGGCGTTAGGCACCCGTCTTTTG
CATCGCTATAAAGCACACTCCTCTTTTTTTTGCCGTACATACACATCACA
CCGCAGACAGGGTACATCGCTACAAATGAATCGCGCCTTTCAGTTCAATA
GCCGCGCGCTCCTCCGGGCCACCTGCCTGGGCGCCGGGGCCGCGGTGTGC
AGCCTTTTCCTAGCCGGCTCGGGCTCCGCGCCGAGAGATCGAGGCACGCC
GGTCGCTGCCATCAACGCAGGCGGCGGCGTCTGCTCCCCGCTGGAAGTCG
TTGGCCTGGACAGCTGCCCCGATATGAAGTACCAGGTCGTGAGGAAGCTT
CTCGCCGCTAAGGCCGATATTCTGCGCCAGGTTAGCTGACCATGGTTTCC
AGATCCGCAGCTGAAAATCATCATGTAGGTTTTTGTTGGTATGTGGAAAC
GATTTTCGGGTATGTGTGCATTTTCGCTGCGGCGAGAGGTCTGTTGGGAA
CATTTCAACGCGGGTGTAGCTCGTTTCAACAGCGAAGCATCAGAACGGTT
TTGCCACGCATGGCAGACTCCCACTGCTTCTCGAGGCCACTCCATTCTCT
TCTGTTTCGATGGACATGCGTGGTAACGATCAACAAGTCTTGCCTGCCTC
GCCCCCTCGCTTTTACTGCCCGGGTCGGCGGGTGCGACCACCGCCCCAAC
TTTCCCTTAATGCACGAGTCAACATCGCTGTGAACAACGGAGAGGGCATG
GCTCTATCTCTCTCTGTCTGTGAAACAACAACAGCAACAACGACAGACGG
ATGACAAGCAACAGAGTAACAGAGTGACAGAACAGCTTGCATCTAACTCC
CCCGAAAGCAGGTGATAGACGTCCTCACCGACCCCGCCAGCGCCGGGCAG
GGCGGGCGACCCGACGAGCCCCTGCTGCTGGTGCGGAAGCTGGCGCTGGA
CGAGACGGACGCCGTGTTCGGCGCTTTCGAGAGCAGGTTCCTGAGGTACG
CCGCCGACGCGGGGTCGTGGAGCCCCCTCCCCGGCGGCTTCAACCGCTGG
ATGGAGAGGTACCACCGGGAGGTCCTGCGCGGCTCGAGGCCGGTCCTGGT
CACGGTCCACGTGAGTTGTCGCGGTGGTACTGGCCGCCGCCGCCGCCGCT
GGCCGTTGTGTTTCTGTTGAGGTCGCCGAGGTTGCTGGGGTTAGGCTACA
GGCCGCAATAAGCAGCGTTTAATTCTGTTTTTGCTCTTCCCCCCGCAAAC
ACGTCCACCCCGTGGGTAGCCCGGCTGCACCTTGTTGCGTGCGAAGGACG
CACGGTCGATAATCTCTCCCAGTTCGATTTTCGGAGTGTTTTTGTTCTCC
TTTCCGCTGCCAATCTTTCGCCGCCACCGGCCGGTGTGAACCTCCCGAGA
AAAACAAGCACCCACCAAGTGATAAGCATGGACCGAAACAGCACGCCTTC
CGAAAGCCAGTACCCGTGCTCTCACCCAGCGATGCGGCTTCGCCCCGCCC
TGTCCCCCTTGCCGGGGGGCCCGTTTCGACGGCCAGAAAGTCGACGTACA
CATACATATCCCACCACATTCCACCCCCCCGGTTGAACGGGCGTGATGGT
GTTTGCTTGTTCGCGTGTCACGCCTCGGGGGAACCGGGGGGGGGGCTGCC
TGCTTTTCTAGCAACCGCGCCCCGTCTAGAAACGAAAAAAGGGAGCAAAA
CACTTATCGCCCCCCTGCTGGGCACGCACTGAAGCCCCCGTCCCCACTGT
CCTCACCTCACCGGTCAAGATCCCGGGACGTCAAACGAAACCAAACCAAA
CTAAATCGAACCACGCCGAATCATCAACTCTCAACTGGCGCAGGGCGACG
ACGTGTGCGCCCTAGAGAAGGAGCTGTCGCTGAAGGCCAGGACGGAGGCG
GCGGGCGTCTCCGTCGCGGACAACATCGAGGGCGCTACTGTTGGGGAGGA
GCCCTCCGCGGCGACGCTGGCGCAAACCCGGCGCCAGGGGACGGACGGTG
GCGGCGGCGGAGGCGGAGGTGGGGGCGACCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6529:7604..10735+

>mRNA_L-elsbetiae_contig6529.15225.1 ID=mRNA_L-elsbetiae_contig6529.15225.1|Name=mRNA_L-elsbetiae_contig6529.15225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig6529:7604..10735+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATCGCGCCTTTCAGTTCAATAGCCGCGCGCTCCTCCGGGCCACCTG
CCTGGGCGCCGGGGCCGCGGTGTGCAGCCTTTTCCTAGCCGGCTCGGGCT
CCGCGCCGAGAGATCGAGGCACGCCGGTCGCTGCCATCAACGCAGGCGGC
GGCGTCTGCTCCCCGCTGGAAGTCGTTGGCCTGGACAGCTGCCCCGATAT
GAAGTACCAGGTCGTGAGGAAGCTTCTCGCCGCTAAGGCCGATATTCTGC
GCCAGATGAATCGCGCCTTTCAGTTCAATAGCCGCGCGCTCCTCCGGGCC
ACCTGCCTGGGCGCCGGGGCCGCGGTGTGCAGCCTTTTCCTAGCCGGCTC
GGGCTCCGCGCCGAGAGATCGAGGCACGCCGGTCGCTGCCATCAACGCAG
GCGGCGGCGTCTGCTCCCCGCTGGAAGTCGTTGGCCTGGACAGCTGCCCC
GATATGAAGTACCAGGTCGTGAGGAAGCTTCTCGCCGCTAAGGCCGATAT
TCTGCGCCAGGTGATAGACGTCCTCACCGACCCCGCCAGCGCCGGGCAGG
GCGGGCGACCCGACGAGCCCCTGCTGCTGGTGCGGAAGCTGGCGCTGGAC
GAGACGGACGCCGTGTTCGGCGCTTTCGAGAGCAGGTTCCTGAGGTACGC
CGCCGACGCGGGGTCGTGGAGCCCCCTCCCCGGCGGCTTCAACCGCTGGA
TGGAGAGGTACCACCGGGAGGTCCTGCGCGGCTCGAGGCCGGTCCTGGTC
ACGGTCCACGTGATAGACGTCCTCACCGACCCCGCCAGCGCCGGGCAGGG
CGGGCGACCCGACGAGCCCCTGCTGCTGGTGCGGAAGCTGGCGCTGGACG
AGACGGACGCCGTGTTCGGCGCTTTCGAGAGCAGGTTCCTGAGGTACGCC
GCCGACGCGGGGTCGTGGAGCCCCCTCCCCGGCGGCTTCAACCGCTGGAT
GGAGAGGTACCACCGGGAGGTCCTGCGCGGCTCGAGGCCGGTCCTGGTCA
CGGTCCACGGCGACGACGTGTGCGCCCTAGAGAAGGAGCTGTCGCTGAAG
GCCAGGACGGAGGCGGCGGGCGTCTCCGTCGCGGACAACATCGAGGGCGC
TACTGTTGGGGAGGAGCCCTCCGCGGCGACGCTGGCGCAAACCCGGCGCC
AGGGGACGGACGGTGGCGGCGGCGGAGGCGGAGGTGGGGGCGACCACGGC
GACGACGTGTGCGCCCTAGAGAAGGAGCTGTCGCTGAAGGCCAGGACGGA
GGCGGCGGGCGTCTCCGTCGCGGACAACATCGAGGGCGCTACTGTTGGGG
AGGAGCCCTCCGCGGCGACGCTGGCGCAAACCCGGCGCCAGGGGACGGAC
GGTGGCGGCGGCGGAGGCGGAGGTGGGGGCGACCAC
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