mRNA_L-elsbetiae_contig6522.15216.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6522.15216.1
Unique NamemRNA_L-elsbetiae_contig6522.15216.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6522.15216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6522contigL-elsbetiae_contig6522:7478..8870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1045
Cds size1044
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6522.15216.1prot_L-elsbetiae_contig6522.15216.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6522 7478..8870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.16638-CDS-L-elsbetiae_contig6522:7477..75091622816720.16638-CDS-L-elsbetiae_contig6522:7477..7509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6522 7478..7509 +
1691683763.930791-CDS-L-elsbetiae_contig6522:7477..75091691683763.930791-CDS-L-elsbetiae_contig6522:7477..7509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6522 7478..7509 +
1622816720.18639-CDS-L-elsbetiae_contig6522:7695..82931622816720.18639-CDS-L-elsbetiae_contig6522:7695..8293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6522 7696..8293 +
1691683763.9412527-CDS-L-elsbetiae_contig6522:7695..82931691683763.9412527-CDS-L-elsbetiae_contig6522:7695..8293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6522 7696..8293 +
1622816720.2003937-CDS-L-elsbetiae_contig6522:8456..88701622816720.2003937-CDS-L-elsbetiae_contig6522:8456..8870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6522 8457..8870 +
1691683763.9520245-CDS-L-elsbetiae_contig6522:8456..88701691683763.9520245-CDS-L-elsbetiae_contig6522:8456..8870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6522 8457..8870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6522.15216.1

>prot_L-elsbetiae_contig6522.15216.1 ID=prot_L-elsbetiae_contig6522.15216.1|Name=mRNA_L-elsbetiae_contig6522.15216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=348bp
LQAAHDHLASKGAELCGWARRGSEPRHRRLVRPRTSPDASRGLCSVGPSP
PPFPHRRYVSSAGLYRGVEADPRQETDDENRNSCRNNPLCDNFEARFLED
FASEGSQGWIPHVGAPEHTAISNGVANEGLLPGFGRKPGVHFCSPPPQFC
RTIGHRARGRLWSNRAASKVMSKAGGRTRNLGSASSTPRQLPKRPRWDAR
FGVRGRDAPAETTTTCGKGDPPSCGVTFEQDSGPRMPCPGGGEDGVPTDI
SVIASSGGYSTSTFVAETVSSSALPSDNASVGEVWSEAGSTYGDASIGSS
SPWTHRRETAKAKKAEPAAIGQADGGDAWHACDAVALDEIQPAINHTA
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mRNA from alignment at L-elsbetiae_contig6522:7478..8870+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6522.15216.1 ID=mRNA_L-elsbetiae_contig6522.15216.1|Name=mRNA_L-elsbetiae_contig6522.15216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1393bp|location=Sequence derived from alignment at L-elsbetiae_contig6522:7478..8870+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCAAGCGGCACACGACCACCTGGCAAGCAAGTACGTAATCGATGGGAA
TCGCAAGGACCCACCATTGAACCCTTGCCAACCGGAAATCCAACGCCGTG
TTCGGGTACCCACGACCGGTATACCCATTCTAAAATTCAACGGCCGAAAA
CGCTATCGATTCGCGCGTGTTTTTTCTCACTAAAACACGGCGAATTTGTC
GTTTTCTCAAACCCTCAGGGGCGCGGAGTTATGCGGATGGGCAAGGCGTG
GCAGCGAACCGCGTCACCGCCGCCTTGTGCGCCCTCGCACATCCCCCGAT
GCCAGTCGAGGTTTGTGCTCGGTCGGGCCGTCACCGCCACCGTTTCCGCA
CCGACGGTATGTTTCGTCCGCAGGTTTGTACCGTGGTGTTGAAGCTGACC
CAAGACAAGAAACCGACGACGAGAATCGCAACTCCTGCCGAAATAACCCC
CTGTGCGATAATTTCGAGGCGCGCTTTCTGGAAGATTTTGCGTCTGAGGG
CAGCCAGGGGTGGATTCCGCATGTCGGGGCCCCTGAACACACAGCTATAT
CGAACGGCGTCGCAAACGAAGGACTACTGCCCGGCTTTGGACGTAAGCCT
GGCGTACACTTTTGTTCTCCACCCCCACAATTTTGCCGGACCATCGGTCA
CCGTGCTCGAGGCAGACTATGGTCGAACCGAGCTGCTTCGAAAGTGATGT
CGAAGGCGGGGGGGCGCACTCGCAACCTTGGCAGCGCCAGTTCAACGCCC
CGGCAGCTTCCAAAGCGGCCACGGTGGGATGCGAGGTTCGGAGTACGAGG
TCGAGACGCCCCCGCGGTAAGGCTGCATTGACGGAGTGAATGAGAACGTC
TTATGTACTTCAATACTTCCGTACGTAATGTAGTACAATTGAGGCAAGTT
TTCCAATGAAGACCTCGAGCGCGTGCGGGCTTCGCCGACGCCTTCAAGTG
TTTCCCGTTGCCTCACGGTTGCCTCGCAGGAAACCACCACGACTTGCGGA
AAAGGGGACCCACCCTCGTGCGGGGTAACTTTCGAGCAAGACTCGGGCCC
GAGGATGCCCTGCCCCGGCGGGGGGGAGGACGGCGTTCCCACGGATATCT
CTGTCATCGCCTCGAGTGGGGGATACAGCACGAGCACCTTCGTTGCAGAA
ACCGTCTCGTCTTCCGCCCTGCCTAGTGACAATGCCAGCGTCGGCGAGGT
CTGGAGTGAGGCCGGCAGCACATACGGCGATGCGTCGATAGGAAGCAGTT
CTCCCTGGACGCACAGACGGGAAACGGCTAAGGCGAAGAAGGCGGAGCCC
GCCGCGATTGGGCAGGCGGATGGCGGAGATGCTTGGCATGCCTGCGATGC
TGTGGCGCTTGACGAGATACAACCAGCTATCAACCACACGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6522:7478..8870+

>mRNA_L-elsbetiae_contig6522.15216.1 ID=mRNA_L-elsbetiae_contig6522.15216.1|Name=mRNA_L-elsbetiae_contig6522.15216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2088bp|location=Sequence derived from alignment at L-elsbetiae_contig6522:7478..8870+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCAAGCGGCACACGACCACCTGGCAAGCAACTTCAAGCGGCACACGAC
CACCTGGCAAGCAAGGGCGCGGAGTTATGCGGATGGGCAAGGCGTGGCAG
CGAACCGCGTCACCGCCGCCTTGTGCGCCCTCGCACATCCCCCGATGCCA
GTCGAGGTTTGTGCTCGGTCGGGCCGTCACCGCCACCGTTTCCGCACCGA
CGGTATGTTTCGTCCGCAGGTTTGTACCGTGGTGTTGAAGCTGACCCAAG
ACAAGAAACCGACGACGAGAATCGCAACTCCTGCCGAAATAACCCCCTGT
GCGATAATTTCGAGGCGCGCTTTCTGGAAGATTTTGCGTCTGAGGGCAGC
CAGGGGTGGATTCCGCATGTCGGGGCCCCTGAACACACAGCTATATCGAA
CGGCGTCGCAAACGAAGGACTACTGCCCGGCTTTGGACGTAAGCCTGGCG
TACACTTTTGTTCTCCACCCCCACAATTTTGCCGGACCATCGGTCACCGT
GCTCGAGGCAGACTATGGTCGAACCGAGCTGCTTCGAAAGTGATGTCGAA
GGCGGGGGGGCGCACTCGCAACCTTGGCAGCGCCAGTTCAACGCCCCGGC
AGCTTCCAAAGCGGCCACGGTGGGATGCGAGGTTCGGAGTACGAGGTCGA
GACGCCCCCGCGGGGCGCGGAGTTATGCGGATGGGCAAGGCGTGGCAGCG
AACCGCGTCACCGCCGCCTTGTGCGCCCTCGCACATCCCCCGATGCCAGT
CGAGGTTTGTGCTCGGTCGGGCCGTCACCGCCACCGTTTCCGCACCGACG
GTATGTTTCGTCCGCAGGTTTGTACCGTGGTGTTGAAGCTGACCCAAGAC
AAGAAACCGACGACGAGAATCGCAACTCCTGCCGAAATAACCCCCTGTGC
GATAATTTCGAGGCGCGCTTTCTGGAAGATTTTGCGTCTGAGGGCAGCCA
GGGGTGGATTCCGCATGTCGGGGCCCCTGAACACACAGCTATATCGAACG
GCGTCGCAAACGAAGGACTACTGCCCGGCTTTGGACGTAAGCCTGGCGTA
CACTTTTGTTCTCCACCCCCACAATTTTGCCGGACCATCGGTCACCGTGC
TCGAGGCAGACTATGGTCGAACCGAGCTGCTTCGAAAGTGATGTCGAAGG
CGGGGGGGCGCACTCGCAACCTTGGCAGCGCCAGTTCAACGCCCCGGCAG
CTTCCAAAGCGGCCACGGTGGGATGCGAGGTTCGGAGTACGAGGTCGAGA
CGCCCCCGCGGAAACCACCACGACTTGCGGAAAAGGGGACCCACCCTCGT
GCGGGGTAACTTTCGAGCAAGACTCGGGCCCGAGGATGCCCTGCCCCGGC
GGGGGGGAGGACGGCGTTCCCACGGATATCTCTGTCATCGCCTCGAGTGG
GGGATACAGCACGAGCACCTTCGTTGCAGAAACCGTCTCGTCTTCCGCCC
TGCCTAGTGACAATGCCAGCGTCGGCGAGGTCTGGAGTGAGGCCGGCAGC
ACATACGGCGATGCGTCGATAGGAAGCAGTTCTCCCTGGACGCACAGACG
GGAAACGGCTAAGGCGAAGAAGGCGGAGCCCGCCGCGATTGGGCAGGCGG
ATGGCGGAGATGCTTGGCATGCCTGCGATGCTGTGGCGCTTGACGAGATA
CAACCAGCTATCAACCACACGGCGGAAACCACCACGACTTGCGGAAAAGG
GGACCCACCCTCGTGCGGGGTAACTTTCGAGCAAGACTCGGGCCCGAGGA
TGCCCTGCCCCGGCGGGGGGGAGGACGGCGTTCCCACGGATATCTCTGTC
ATCGCCTCGAGTGGGGGATACAGCACGAGCACCTTCGTTGCAGAAACCGT
CTCGTCTTCCGCCCTGCCTAGTGACAATGCCAGCGTCGGCGAGGTCTGGA
GTGAGGCCGGCAGCACATACGGCGATGCGTCGATAGGAAGCAGTTCTCCC
TGGACGCACAGACGGGAAACGGCTAAGGCGAAGAAGGCGGAGCCCGCCGC
GATTGGGCAGGCGGATGGCGGAGATGCTTGGCATGCCTGCGATGCTGTGG
CGCTTGACGAGATACAACCAGCTATCAACCACACGGCG
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