mRNA_L-elsbetiae_contig6522.15214.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6522.15214.1
Unique NamemRNA_L-elsbetiae_contig6522.15214.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6522.15214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6522contigL-elsbetiae_contig6522:2626..3719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.049354-CDS-L-elsbetiae_contig6522:2627..28631622816720.049354-CDS-L-elsbetiae_contig6522:2627..2863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6522 2628..2863 -
1691683763.8885381-CDS-L-elsbetiae_contig6522:2627..28631691683763.8885381-CDS-L-elsbetiae_contig6522:2627..2863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6522 2628..2863 -
1622816720.0606868-CDS-L-elsbetiae_contig6522:3655..37191622816720.0606868-CDS-L-elsbetiae_contig6522:3655..3719Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6522 3656..3719 -
1691683763.8989296-CDS-L-elsbetiae_contig6522:3655..37191691683763.8989296-CDS-L-elsbetiae_contig6522:3655..3719Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6522 3656..3719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6522.15214.1prot_L-elsbetiae_contig6522.15214.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6522 2628..3719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6522.15214.1

>prot_L-elsbetiae_contig6522.15214.1 ID=prot_L-elsbetiae_contig6522.15214.1|Name=mRNA_L-elsbetiae_contig6522.15214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
NNTGPAKLREGRPEKWRYPDSTESTHGGCLCIHNRPDPLPPSRPRLSQRR
RYDQAAEKKMPSVPVAGATLVEAAAEPCPFAAASSRRRLRTARRVRPRSR
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mRNA from alignment at L-elsbetiae_contig6522:2626..3719-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6522.15214.1 ID=mRNA_L-elsbetiae_contig6522.15214.1|Name=mRNA_L-elsbetiae_contig6522.15214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1094bp|location=Sequence derived from alignment at L-elsbetiae_contig6522:2626..3719- (Laminarionema elsbetiae ELsaHSoW15)
AACAACACAGGGCCGGCGAAGCTGCGAGAGGGACGACCGGAGAAGTGGAG
ATACCCTGACTCGAGTGAGTTGTGTTGGGTGTATGTGTGTGTGTTGAGAG
CATTTGATTAAAGAGTTAAATGGAAGAGGGAGAGCATGTGCGCTTTCCCT
GTTATGTGCATGTTGCATCGAAATCCTCCTCTGCGCACGCTTACACCCAG
CCCGCGAGTTGGCTGTGTGTCGACTCTTTTGCAGCAGTCCTGCACCACTT
CCCAGAACGATGTGCTAGGTGAATCCCTTCTGGTTCGGTTGGTGTCATTG
GTTAGCCAAGTGGCGTAGCGTGTGTCACGTCAAGGGCTGACAACAGCGCT
TCGAGATTATGTTTTTTTTTAACATACTAGACTACTACCTAGTCTACGCC
GCCGCCTTCGCGCACTTACAATCACGGCTTTGTTTTTCAAGGCTCCCGTG
GGGTGTCGGTAGTTGTGCACTTGGGAGGCACACACCGTCCCTCACGATGT
AATGAATACTCTACAATAATCATATTTCTTTTTCCTCTCTTTTTTGCTCG
CGTTTCGCGCGGAACGTCCATTTACCTACACAACAATCTTCCAATCTTCG
TCTAGACTTGGAAGACTATTGGATTGTTGTTCAACCAGGACCGGGAACCA
ACGCACGAGAGCTTAGCCCCGGGTGGCCACGAGAGCTTTGCCGGGCGTTG
AAAACTCGAGCGACTGCTGCTGAAACACTTGTCCCCTTCCTCTGCGCAAC
GCCTCGAGCTACTTCCTATTGTAGTTGGGCCGTTTTTTTTGTCACGTTCT
GTCTAACCCCGACCCCGCCCCCCACGCCTTGACGCTTTTTTCTTTTTCCT
GGGCAGCGGAGAGCACGCACGGGGGGTGTTTGTGTATCCACAACAGGCCG
GACCCCCTGCCGCCGTCTCGGCCCCGCTTGAGCCAGCGCCGGCGGTACGA
CCAGGCCGCGGAGAAGAAAATGCCGTCCGTACCCGTCGCCGGAGCAACCC
TCGTGGAGGCGGCCGCAGAGCCCTGCCCCTTCGCCGCGGCTTCCTCCCGC
CGGCGACTGCGCACGGCGCGACGCGTGCGCCCTCGCTCCCGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6522:2626..3719-

>mRNA_L-elsbetiae_contig6522.15214.1 ID=mRNA_L-elsbetiae_contig6522.15214.1|Name=mRNA_L-elsbetiae_contig6522.15214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig6522:2626..3719- (Laminarionema elsbetiae ELsaHSoW15)
AACAACACAGGGCCGGCGAAGCTGCGAGAGGGACGACCGGAGAAGTGGAG
ATACCCTGACTCGAAACAACACAGGGCCGGCGAAGCTGCGAGAGGGACGA
CCGGAGAAGTGGAGATACCCTGACTCGACGGAGAGCACGCACGGGGGGTG
TTTGTGTATCCACAACAGGCCGGACCCCCTGCCGCCGTCTCGGCCCCGCT
TGAGCCAGCGCCGGCGGTACGACCAGGCCGCGGAGAAGAAAATGCCGTCC
GTACCCGTCGCCGGAGCAACCCTCGTGGAGGCGGCCGCAGAGCCCTGCCC
CTTCGCCGCGGCTTCCTCCCGCCGGCGACTGCGCACGGCGCGACGCGTGC
GCCCTCGCTCCCGCCGGAGAGCACGCACGGGGGGTGTTTGTGTATCCACA
ACAGGCCGGACCCCCTGCCGCCGTCTCGGCCCCGCTTGAGCCAGCGCCGG
CGGTACGACCAGGCCGCGGAGAAGAAAATGCCGTCCGTACCCGTCGCCGG
AGCAACCCTCGTGGAGGCGGCCGCAGAGCCCTGCCCCTTCGCCGCGGCTT
CCTCCCGCCGGCGACTGCGCACGGCGCGACGCGTGCGCCCTCGCTCCCGC
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