mRNA_L-elsbetiae_contig6513.15206.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6513.15206.1
Unique NamemRNA_L-elsbetiae_contig6513.15206.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6513.15206.1 vs. uniprot
Match: D8LMH4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH4_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 5.070e-20
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 LECGHFVHVSCGREQLNRGRPTARLTFSFMSCPVCRADKV 120
            LECGHFVHVSCGREQL RGRPTARLTF FMSCPVCRADKV
Sbjct:  197 LECGHFVHVSCGREQLMRGRPTARLTFGFMSCPVCRADKV 236
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BLAST of mRNA_L-elsbetiae_contig6513.15206.1 vs. uniprot
Match: A0A6H5JCA5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA5_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.030e-19
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 LECGHFVHVSCGREQLNRGRPTARLTFSFMSCPVCRADKV 120
            LECGHFVHVSCGREQL RGRPTARLTF FMSCPVCRADKV
Sbjct:  439 LECGHFVHVSCGREQLMRGRPTARLTFGFMSCPVCRADKV 478
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BLAST of mRNA_L-elsbetiae_contig6513.15206.1 vs. uniprot
Match: X6MCA5_RETFI (RING-type domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MCA5_RETFI)

HSP 1 Score: 53.1 bits (126), Expect = 6.670e-7
Identity = 19/44 (43.18%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 LECGHFVHVSCGREQLNRGRPTARLTFSFMSCPVCRADKVRKAV 132
            LECGH+ H  C   +++R  P+AR+TF F+SCP+C+ +   +A+
Sbjct:  361 LECGHYFHFMCVWNKIDRRWPSARITFGFLSCPLCKKEIKHEAM 404
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BLAST of mRNA_L-elsbetiae_contig6513.15206.1 vs. uniprot
Match: A0A7S1EKJ8_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EKJ8_HEMAN)

HSP 1 Score: 49.7 bits (117), Expect = 1.120e-5
Identity = 18/36 (50.00%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 LECGHFVHVSCGREQLNRGRPTARLTFSFMSCPVCR 108
            L CGH  H+ C R++L +  PTA+++FSF  CP+CR
Sbjct:  290 LGCGHTFHLLCVRQRLEKRWPTAKISFSFAECPLCR 325
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BLAST of mRNA_L-elsbetiae_contig6513.15206.1 vs. uniprot
Match: X6NC07_RETFI (RING-type domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NC07_RETFI)

HSP 1 Score: 48.5 bits (114), Expect = 2.870e-5
Identity = 16/38 (42.11%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 LECGHFVHVSCGREQLNRGRPTARLTFSFMSCPVCRAD 114
            L+CGH  H  C   +++R  P+AR+TF F++CP+C+ +
Sbjct:  352 LDCGHHFHFMCVWNKVDRRWPSARITFGFLNCPLCKRE 389
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BLAST of mRNA_L-elsbetiae_contig6513.15206.1 vs. uniprot
Match: UPI001F078A45 (E3 ubiquitin-protein ligase MYCBP2 isoform X15 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F078A45)

HSP 1 Score: 47.8 bits (112), Expect = 5.380e-5
Identity = 20/44 (45.45%), Postives = 27/44 (61.36%), Query Frame = 1 
Query:    1 LECGHFVHVSCGREQLNRGRPTARLTFSFMSCPVCRADKVRKAV 132
            L+CGH  H+ C R  L       R+TF FMSCP+C+ +K+  AV
Sbjct: 4363 LDCGHVFHLQCTRRVLESRWLGPRITFGFMSCPICK-NKINHAV 4405
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BLAST of mRNA_L-elsbetiae_contig6513.15206.1 vs. uniprot
Match: UPI001F08694E (E3 ubiquitin-protein ligase MYCBP2 isoform X9 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F08694E)

HSP 1 Score: 47.8 bits (112), Expect = 5.380e-5
Identity = 20/44 (45.45%), Postives = 27/44 (61.36%), Query Frame = 1 
Query:    1 LECGHFVHVSCGREQLNRGRPTARLTFSFMSCPVCRADKVRKAV 132
            L+CGH  H+ C R  L       R+TF FMSCP+C+ +K+  AV
Sbjct: 4539 LDCGHVFHLQCTRRVLESRWLGPRITFGFMSCPICK-NKINHAV 4581
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BLAST of mRNA_L-elsbetiae_contig6513.15206.1 vs. uniprot
Match: UPI001F078D8D (E3 ubiquitin-protein ligase MYCBP2 isoform X5 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F078D8D)

HSP 1 Score: 47.8 bits (112), Expect = 5.380e-5
Identity = 20/44 (45.45%), Postives = 27/44 (61.36%), Query Frame = 1 
Query:    1 LECGHFVHVSCGREQLNRGRPTARLTFSFMSCPVCRADKVRKAV 132
            L+CGH  H+ C R  L       R+TF FMSCP+C+ +K+  AV
Sbjct: 4547 LDCGHVFHLQCTRRVLESRWLGPRITFGFMSCPICK-NKINHAV 4589
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BLAST of mRNA_L-elsbetiae_contig6513.15206.1 vs. uniprot
Match: UPI001F08019A (E3 ubiquitin-protein ligase MYCBP2 isoform X3 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F08019A)

HSP 1 Score: 47.8 bits (112), Expect = 5.380e-5
Identity = 20/44 (45.45%), Postives = 27/44 (61.36%), Query Frame = 1 
Query:    1 LECGHFVHVSCGREQLNRGRPTARLTFSFMSCPVCRADKVRKAV 132
            L+CGH  H+ C R  L       R+TF FMSCP+C+ +K+  AV
Sbjct: 4574 LDCGHVFHLQCTRRVLESRWLGPRITFGFMSCPICK-NKINHAV 4616
[Close]
BLAST of mRNA_L-elsbetiae_contig6513.15206.1 vs. uniprot
Match: UPI001F0797F3 (E3 ubiquitin-protein ligase MYCBP2 isoform X1 n=2 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F0797F3)

HSP 1 Score: 47.8 bits (112), Expect = 5.380e-5
Identity = 20/44 (45.45%), Postives = 27/44 (61.36%), Query Frame = 1 
Query:    1 LECGHFVHVSCGREQLNRGRPTARLTFSFMSCPVCRADKVRKAV 132
            L+CGH  H+ C R  L       R+TF FMSCP+C+ +K+  AV
Sbjct: 4582 LDCGHVFHLQCTRRVLESRWLGPRITFGFMSCPICK-NKINHAV 4624
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6513.15206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LMH4_ECTSI5.070e-2095.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JCA5_9PHAE3.030e-1995.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
X6MCA5_RETFI6.670e-743.18RING-type domain-containing protein n=1 Tax=Reticu... [more]
A0A7S1EKJ8_HEMAN1.120e-550.00Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
X6NC07_RETFI2.870e-542.11RING-type domain-containing protein n=1 Tax=Reticu... [more]
UPI001F078A455.380e-545.45E3 ubiquitin-protein ligase MYCBP2 isoform X15 n=1... [more]
UPI001F08694E5.380e-545.45E3 ubiquitin-protein ligase MYCBP2 isoform X9 n=1 ... [more]
UPI001F078D8D5.380e-545.45E3 ubiquitin-protein ligase MYCBP2 isoform X5 n=1 ... [more]
UPI001F08019A5.380e-545.45E3 ubiquitin-protein ligase MYCBP2 isoform X3 n=1 ... [more]
UPI001F0797F35.380e-545.45E3 ubiquitin-protein ligase MYCBP2 isoform X1 n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6513contigL-elsbetiae_contig6513:565..699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1.1e-15
Seed eggNOG ortholog2880.D8LMH4
KEGG koko:K10693
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.regulation of axon guidance
EggNOG OGsKOG1428@1,KOG1428@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816719.5542736-CDS-L-elsbetiae_contig6513:564..6991622816719.5542736-CDS-L-elsbetiae_contig6513:564..699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6513 565..699 +
1691683763.523367-CDS-L-elsbetiae_contig6513:564..6991691683763.523367-CDS-L-elsbetiae_contig6513:564..699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6513 565..699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6513.15206.1prot_L-elsbetiae_contig6513.15206.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6513 565..699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6513.15206.1

>prot_L-elsbetiae_contig6513.15206.1 ID=prot_L-elsbetiae_contig6513.15206.1|Name=mRNA_L-elsbetiae_contig6513.15206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=45bp
LECGHFVHVSCGREQLNRGRPTARLTFSFMSCPVCRADKVRKAV*
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mRNA from alignment at L-elsbetiae_contig6513:565..699+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6513.15206.1 ID=mRNA_L-elsbetiae_contig6513.15206.1|Name=mRNA_L-elsbetiae_contig6513.15206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=135bp|location=Sequence derived from alignment at L-elsbetiae_contig6513:565..699+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGAGTGCGGCCACTTCGTGCACGTCTCGTGCGGCAGGGAGCAGCTTAA
CCGGGGACGGCCGACGGCGCGGTTGACATTCAGTTTCATGAGCTGCCCCG
TCTGCCGTGCAGATAAGGTGCGGAAAGCGGTGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6513:565..699+

>mRNA_L-elsbetiae_contig6513.15206.1 ID=mRNA_L-elsbetiae_contig6513.15206.1|Name=mRNA_L-elsbetiae_contig6513.15206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=270bp|location=Sequence derived from alignment at L-elsbetiae_contig6513:565..699+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGAGTGCGGCCACTTCGTGCACGTCTCGTGCGGCAGGGAGCAGCTTAA
CCGGGGACGGCCGACGGCGCGGTTGACATTCAGTTTCATGAGCTGCCCCG
TCTGCCGTGCAGATAAGGTGCGGAAAGCGGTGTAACTGGAGTGCGGCCAC
TTCGTGCACGTCTCGTGCGGCAGGGAGCAGCTTAACCGGGGACGGCCGAC
GGCGCGGTTGACATTCAGTTTCATGAGCTGCCCCGTCTGCCGTGCAGATA
AGGTGCGGAAAGCGGTGTAA
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