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Homology
BLAST of mRNA_L-elsbetiae_contig6513.15207.1 vs. uniprot
Match: A0A6H5JCA5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA5_9PHAE) HSP 1 Score: 119 bits (299), Expect = 8.760e-25 Identity = 202/605 (33.39%), Postives = 259/605 (42.81%), Query Frame = 2
Query: 62 SQEDYLHRKRQMLIAQADVAVKRAVAAGARSP-AARAARAR--GLALDAPVARGRSPLVHERLEQQLEKGKNVLEERRRVR-DARKELDDLPLPGYYPFRSRRQ------SAGANVGXXXXXXXX------------------DANGEED-----KPRRRLLPVRRSDDDV--------------------AVPNQPPRIRRV-----PREVLDVPVDV---GD-----GDDGERAKRVW------GWGGVAG--GAAAAALA---GQPSQDPKMGRR--ARK----------------------EGLPKTEPDAAERRDPGGSGSPRIKNANRKPPASAPGSHADSG-----VDGDNGLADDWLELLQWPLRALGARPRRKSRXXXXXXXXXXXXXXXXXFGQKEGDGDEDVVVLENSYF------PRSKRKEPRRSG---------------------GDVSSDGLDLEPEVDD--------APSPAVVDGDGKSRAKRNRPVKRRSVADSHANLQDIPEPPPKRVRFG-GAGGVGVGPLAAPGFDDAYWQARDRAGGRSGVEDEWLALGRAAGRAGARAARRNKREQEEKEAAASVLDAVIA 1450
S E+YL+++RQMLIA+ADVA+KRA+A G + P AAR A+ GL D P A RSPLV ER+EQQLEKGK VLEERRRVR +RK+L++ LPG PF S++ S GA+ GXXXXXXXX DA+ E+ +++ V+R D+ AV PP + R P + LDV + GD G DG G GG+ G G + AALA GQP + +MG ARK E + ++E D + D G G+ AN ASAP +G VD D GLA D + +L WP RA RPR K K DGD++ + +E P KRK G L+ EV++ +P A VD GK+R K NR K+RSVAD + I E PKRV FG G VG+G G+ + EW AL R AG ++ EQEEKEAA +V DAV+A
Sbjct: 704 SHEEYLNKRRQMLIARADVAMKRAMAGGVKVPGAARGAKGARGGLPADPPAAHPRSPLVRERIEQQLEKGKAVLEERRRVRRKSRKDLNEWGLPGGVPFGSKQSNVAAGDSGGASAGXXXXXXXXXXXXXXXXXXXXXXXXXXDASVVENVQVAANQQQQGDSVQRRGDNAPFCKRDAGEIAGKPAARTAGAVLPPPPGVCRAVASSTPPQSLDVGQEELAQGDREAKGGGDGXXXXXXXXXMDASGRGGMVGRLGGSEAALAPAAGQPPEGSEMGADNCARKGASGRDVDPKVLKLATSRHGIFEAVAESESDEPRKLDCNGGGA----GANGGSAASAPDMRPAAGTDNDKVDDDEGLALDVVGILPWPERARSPRPRHKPAWL-----------------DKGDDGDDEALDMEEEEGVFVVTPPLGKRKREEAGGKGXXXXXXXXXXXXXXXXXXXXXXXXSSLEEVVEVEEKLKRKDGISPKIAAVDLGGKARMKVNR-EKKRSVADFVVDRGGIREASPKRVHFGAGDFSVGLGLARRVGYRP------------KSIGGEWGALERGAGF--------SRNEQEEKEAAGAVADAVMA 1266
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Zinc finger, RING-type |
| Ec32 ortholog | Ec-05_002770.1 |
| Exons | 1 |
| Model size | 1501 |
| Cds size | 1485 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816719.50742-UTR-L-elsbetiae_contig6513:2901..2917 | 1622816719.50742-UTR-L-elsbetiae_contig6513:2901..2917 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6513 2902..2917 + |
| 1691683763.4944062-UTR-L-elsbetiae_contig6513:2901..2917 | 1691683763.4944062-UTR-L-elsbetiae_contig6513:2901..2917 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6513 2902..2917 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816719.5223565-CDS-L-elsbetiae_contig6513:2917..4402 | 1622816719.5223565-CDS-L-elsbetiae_contig6513:2917..4402 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6513 2918..4402 + |
| 1691683763.5072994-CDS-L-elsbetiae_contig6513:2917..4402 | 1691683763.5072994-CDS-L-elsbetiae_contig6513:2917..4402 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6513 2918..4402 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6513.15207.1 >prot_L-elsbetiae_contig6513.15207.1 ID=prot_L-elsbetiae_contig6513.15207.1|Name=mRNA_L-elsbetiae_contig6513.15207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=495bp
MRRPSGVGGAQPNPASQEDYLHRKRQMLIAQADVAVKRAVAAGARSPAAR
AARARGLALDAPVARGRSPLVHERLEQQLEKGKNVLEERRRVRDARKELD
DLPLPGYYPFRSRRQSAGANVGAGAGVAAGDANGEEDKPRRRLLPVRRSD
DDVAVPNQPPRIRRVPREVLDVPVDVGDGDDGERAKRVWGWGGVAGGAAA
AALAGQPSQDPKMGRRARKEGLPKTEPDAAERRDPGGSGSPRIKNANRKP
PASAPGSHADSGVDGDNGLADDWLELLQWPLRALGARPRRKSRAAAAPAA
PAAAAAAAAAFGQKEGDGDEDVVVLENSYFPRSKRKEPRRSGGDVSSDGL
DLEPEVDDAPSPAVVDGDGKSRAKRNRPVKRRSVADSHANLQDIPEPPPK
RVRFGGAGGVGVGPLAAPGFDDAYWQARDRAGGRSGVEDEWLALGRAAGR
AGARAARRNKREQEEKEAAASVLDAVIANRARVRGARDARVAAVA back to topmRNA from alignment at L-elsbetiae_contig6513:2902..4402+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6513.15207.1 ID=mRNA_L-elsbetiae_contig6513.15207.1|Name=mRNA_L-elsbetiae_contig6513.15207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1501bp|location=Sequence derived from alignment at L-elsbetiae_contig6513:2902..4402+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTGGGGCAGCTGGGATGAGAAGGCCTAGTGGCGTGGGAGGTGCGCAGC
CGAACCCTGCTTCGCAAGAGGATTACCTTCACAGGAAGAGACAGATGCTC
ATTGCGCAAGCTGATGTGGCAGTGAAGCGGGCGGTGGCCGCGGGTGCGCG
AAGCCCGGCAGCGAGGGCAGCAAGGGCGAGAGGTTTAGCACTGGATGCTC
CCGTTGCCCGAGGACGCTCCCCTTTGGTGCACGAACGCCTTGAGCAGCAG
CTCGAGAAGGGCAAAAATGTCCTCGAGGAAAGAAGGCGTGTGCGGGATGC
CAGGAAGGAGTTGGACGACCTTCCGCTGCCGGGCTATTATCCATTCCGGT
CAAGACGGCAGTCCGCTGGTGCTAACGTCGGCGCTGGCGCGGGCGTGGCG
GCGGGAGACGCGAATGGGGAAGAGGACAAACCACGACGTCGGCTGCTGCC
TGTTCGTCGATCCGACGATGATGTTGCTGTGCCCAACCAGCCTCCGCGCA
TACGTCGCGTCCCTCGTGAGGTGCTGGACGTACCCGTAGATGTTGGTGAC
GGTGACGACGGCGAGCGGGCCAAGCGTGTTTGGGGGTGGGGTGGCGTGGC
GGGCGGTGCAGCGGCGGCAGCATTAGCGGGACAACCTTCACAAGATCCTA
AGATGGGCAGGCGAGCTCGCAAGGAGGGTTTGCCCAAAACTGAGCCTGAT
GCGGCTGAGAGACGTGACCCCGGTGGCAGCGGCAGCCCCAGAATCAAAAA
CGCTAATCGCAAGCCACCCGCCTCGGCCCCGGGCTCACACGCCGATAGCG
GCGTGGACGGTGACAACGGCTTGGCGGATGATTGGCTTGAGTTGTTGCAG
TGGCCTTTGCGCGCGCTTGGCGCCAGGCCTCGCCGAAAGTCGCGTGCTGC
CGCTGCCCCCGCTGCCCCTGCTGCTGCCGCCGCCGCCGCGGCTGCTTTCG
GACAGAAGGAGGGCGATGGCGACGAGGATGTAGTCGTTTTGGAGAACTCT
TACTTTCCCAGGAGCAAGAGAAAGGAGCCGCGGCGATCAGGTGGTGACGT
GTCTTCCGATGGGCTTGATCTAGAGCCGGAGGTCGATGATGCCCCCTCCC
CCGCCGTTGTGGACGGGGACGGCAAGTCGCGTGCGAAGCGAAACCGCCCA
GTCAAAAGGCGAAGCGTAGCTGACTCTCACGCTAACCTGCAAGACATCCC
GGAGCCACCTCCGAAAAGGGTTCGCTTCGGCGGCGCGGGCGGTGTGGGCG
TGGGACCACTGGCTGCTCCAGGGTTCGACGACGCCTACTGGCAAGCCCGA
GACCGTGCTGGAGGAAGAAGTGGAGTTGAAGACGAGTGGTTGGCGCTGGG
CCGTGCCGCCGGAAGAGCTGGAGCACGAGCGGCTCGCAGGAACAAGCGAG
AGCAAGAAGAGAAAGAAGCGGCAGCCTCTGTGTTGGACGCCGTGATTGCT
AATAGGGCACGGGTAAGAGGCGCAAGAGACGCAAGAGTAGCTGCCGTCGC
G back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6513:2902..4402+ >mRNA_L-elsbetiae_contig6513.15207.1 ID=mRNA_L-elsbetiae_contig6513.15207.1|Name=mRNA_L-elsbetiae_contig6513.15207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2970bp|location=Sequence derived from alignment at L-elsbetiae_contig6513:2902..4402+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAAGGCCTAGTGGCGTGGGAGGTGCGCAGCCGAACCCTGCTTCGCA
AGAGGATTACCTTCACAGGAAGAGACAGATGCTCATTGCGCAAGCTGATG
TGGCAGTGAAGCGGGCGGTGGCCGCGGGTGCGCGAAGCCCGGCAGCGAGG
GCAGCAAGGGCGAGAGGTTTAGCACTGGATGCTCCCGTTGCCCGAGGACG
CTCCCCTTTGGTGCACGAACGCCTTGAGCAGCAGCTCGAGAAGGGCAAAA
ATGTCCTCGAGGAAAGAAGGCGTGTGCGGGATGCCAGGAAGGAGTTGGAC
GACCTTCCGCTGCCGGGCTATTATCCATTCCGGTCAAGACGGCAGTCCGC
TGGTGCTAACGTCGGCGCTGGCGCGGGCGTGGCGGCGGGAGACGCGAATG
GGGAAGAGGACAAACCACGACGTCGGCTGCTGCCTGTTCGTCGATCCGAC
GATGATGTTGCTGTGCCCAACCAGCCTCCGCGCATACGTCGCGTCCCTCG
TGAGGTGCTGGACGTACCCGTAGATGTTGGTGACGGTGACGACGGCGAGC
GGGCCAAGCGTGTTTGGGGGTGGGGTGGCGTGGCGGGCGGTGCAGCGGCG
GCAGCATTAGCGGGACAACCTTCACAAGATCCTAAGATGGGCAGGCGAGC
TCGCAAGGAGGGTTTGCCCAAAACTGAGCCTGATGCGGCTGAGAGACGTG
ACCCCGGTGGCAGCGGCAGCCCCAGAATCAAAAACGCTAATCGCAAGCCA
CCCGCCTCGGCCCCGGGCTCACACGCCGATAGCGGCGTGGACGGTGACAA
CGGCTTGGCGGATGATTGGCTTGAGTTGTTGCAGTGGCCTTTGCGCGCGC
TTGGCGCCAGGCCTCGCCGAAAGTCGCGTGCTGCCGCTGCCCCCGCTGCC
CCTGCTGCTGCCGCCGCCGCCGCGGCTGCTTTCGGACAGAAGGAGGGCGA
TGGCGACGAGGATGTAGTCGTTTTGGAGAACTCTTACTTTCCCAGGAGCA
AGAGAAAGGAGCCGCGGCGATCAGGTGGTGACGTGTCTTCCGATGGGCTT
GATCTAGAGCCGGAGGTCGATGATGCCCCCTCCCCCGCCGTTGTGGACGG
GGACGGCAAGTCGCGTGCGAAGCGAAACCGCCCAGTCAAAAGGCGAAGCG
TAGCTGACTCTCACGCTAACCTGCAAGACATCCCGGAGCCACCTCCGAAA
AGGGTTCGCTTCGGCGGCGCGGGCGGTGTGGGCGTGGGACCACTGGCTGC
TCCAGGGTTCGACGACGCCTACTGGCAAGCCCGAGACCGTGCTGGAGGAA
GAAGTGGAGTTGAAGACGAGTGGTTGGCGCTGGGCCGTGCCGCCGGAAGA
GCTGGAGCACGAGCGGCTCGCAGGAACAAGCGAGAGCAAGAAGAGAAAGA
AGCGGCAGCCTCTGTGTTGGACGCCGTGATTGCTAATAGGGCACGGGTAA
GAGGCGCAAGAGACGCAAGAGTAGCTGCCGTCGCGATGAGAAGGCCTAGT
GGCGTGGGAGGTGCGCAGCCGAACCCTGCTTCGCAAGAGGATTACCTTCA
CAGGAAGAGACAGATGCTCATTGCGCAAGCTGATGTGGCAGTGAAGCGGG
CGGTGGCCGCGGGTGCGCGAAGCCCGGCAGCGAGGGCAGCAAGGGCGAGA
GGTTTAGCACTGGATGCTCCCGTTGCCCGAGGACGCTCCCCTTTGGTGCA
CGAACGCCTTGAGCAGCAGCTCGAGAAGGGCAAAAATGTCCTCGAGGAAA
GAAGGCGTGTGCGGGATGCCAGGAAGGAGTTGGACGACCTTCCGCTGCCG
GGCTATTATCCATTCCGGTCAAGACGGCAGTCCGCTGGTGCTAACGTCGG
CGCTGGCGCGGGCGTGGCGGCGGGAGACGCGAATGGGGAAGAGGACAAAC
CACGACGTCGGCTGCTGCCTGTTCGTCGATCCGACGATGATGTTGCTGTG
CCCAACCAGCCTCCGCGCATACGTCGCGTCCCTCGTGAGGTGCTGGACGT
ACCCGTAGATGTTGGTGACGGTGACGACGGCGAGCGGGCCAAGCGTGTTT
GGGGGTGGGGTGGCGTGGCGGGCGGTGCAGCGGCGGCAGCATTAGCGGGA
CAACCTTCACAAGATCCTAAGATGGGCAGGCGAGCTCGCAAGGAGGGTTT
GCCCAAAACTGAGCCTGATGCGGCTGAGAGACGTGACCCCGGTGGCAGCG
GCAGCCCCAGAATCAAAAACGCTAATCGCAAGCCACCCGCCTCGGCCCCG
GGCTCACACGCCGATAGCGGCGTGGACGGTGACAACGGCTTGGCGGATGA
TTGGCTTGAGTTGTTGCAGTGGCCTTTGCGCGCGCTTGGCGCCAGGCCTC
GCCGAAAGTCGCGTGCTGCCGCTGCCCCCGCTGCCCCTGCTGCTGCCGCC
GCCGCCGCGGCTGCTTTCGGACAGAAGGAGGGCGATGGCGACGAGGATGT
AGTCGTTTTGGAGAACTCTTACTTTCCCAGGAGCAAGAGAAAGGAGCCGC
GGCGATCAGGTGGTGACGTGTCTTCCGATGGGCTTGATCTAGAGCCGGAG
GTCGATGATGCCCCCTCCCCCGCCGTTGTGGACGGGGACGGCAAGTCGCG
TGCGAAGCGAAACCGCCCAGTCAAAAGGCGAAGCGTAGCTGACTCTCACG
CTAACCTGCAAGACATCCCGGAGCCACCTCCGAAAAGGGTTCGCTTCGGC
GGCGCGGGCGGTGTGGGCGTGGGACCACTGGCTGCTCCAGGGTTCGACGA
CGCCTACTGGCAAGCCCGAGACCGTGCTGGAGGAAGAAGTGGAGTTGAAG
ACGAGTGGTTGGCGCTGGGCCGTGCCGCCGGAAGAGCTGGAGCACGAGCG
GCTCGCAGGAACAAGCGAGAGCAAGAAGAGAAAGAAGCGGCAGCCTCTGT
GTTGGACGCCGTGATTGCTAATAGGGCACGGGTAAGAGGCGCAAGAGACG
CAAGAGTAGCTGCCGTCGCG back to top
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