prot_L-elsbetiae_contig6506.15196.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6506.15196.1
Unique Nameprot_L-elsbetiae_contig6506.15196.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length181
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6506.15196.1 vs. uniprot
Match: D7G8P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P4_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 1.040e-46
Identity = 112/185 (60.54%), Postives = 128/185 (69.19%), Query Frame = 0 
Query:    1 MGRSDKKAKAPLRRAVSESAAPSRGQRKRALKKASLISKIGLTK---RARDNPKDSQQPPAPVPAKGDTAATQSRLAVNGSAFQRVVSNKGKRMLMSAEMGQLTAVLNATEFQEDPFAAIQAHLRQTACPAPPTADDDKARRSA---VSAKKVRVGQHSSKKREGREDKKPRTKPYKGRNAKMRT 179
            MG+ D KAK   RR VSESA PSRGQRKRALKKASLI KIGLT    R R   +D +Q P+ V        ++  LA  GSAFQRV SNKGKR LM++EMGQ+ AVL+A  FQ+DPFAAIQAHLRQTA P PP AD  KAR+     VSAK V  GQH+    E R D+KP+ KPYK RNAKMR+
Sbjct:   19 MGKIDTKAK--HRRPVSESAVPSRGQRKRALKKASLIKKIGLTSKHVRQRRTDEDEKQVPS-VATDEKGIPSRPSLAAKGSAFQRVSSNKGKRSLMTSEMGQINAVLSAPSFQQDPFAAIQAHLRQTALPTPPMADC-KARKPGKGKVSAKSV--GQHAG---ETRGDRKPKAKPYKARNAKMRS 194
[Close]
BLAST of mRNA_L-elsbetiae_contig6506.15196.1 vs. uniprot
Match: A0A835ZIC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIC9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.260e-7
Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = 0 
Query:   23 SRGQRKRALKKASLISKIGL-TKRARDNPKDSQQPPAPV---------PAKGDTAATQSRLA----VNGSAFQRVVSNKGKRMLMSAEMGQLTAVLNATEFQEDPFAAIQAHLRQT 124
            SRGQRKRA K+A+L+ K  L T       +++ +    +          A+  +  +Q R A    +  +  +R+++NKGKR +   E+ QL AVL    F+ DPFAAIQAH++ T
Sbjct:   32 SRGQRKRATKRAALVRKRTLVTANVEQRKQEAAKGLGSMGGLMETLTGAAEDASGPSQKRKAAKAQLRSAPARRIITNKGKRSVAEKELAQLAAVLANESFKRDPFAAIQAHMKLT 147
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6506.15196.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8P4_ECTSI1.040e-4660.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZIC9_9STRA3.260e-735.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028160Ribosome biogenesis protein Slx9-likePFAMPF15341SLX9coord: 72..124
e-value: 2.2E-8
score: 34.6
NoneNo IPR availablePANTHERPTHR31109FAMILY NOT NAMEDcoord: 9..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6506contigL-elsbetiae_contig6506:2970..3845 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6506.15196.1mRNA_L-elsbetiae_contig6506.15196.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6506 2970..3845 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6506.15196.1 ID=prot_L-elsbetiae_contig6506.15196.1|Name=mRNA_L-elsbetiae_contig6506.15196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MGRSDKKAKAPLRRAVSESAAPSRGQRKRALKKASLISKIGLTKRARDNP
KDSQQPPAPVPAKGDTAATQSRLAVNGSAFQRVVSNKGKRMLMSAEMGQL
TAVLNATEFQEDPFAAIQAHLRQTACPAPPTADDDKARRSAVSAKKVRVG
QHSSKKREGREDKKPRTKPYKGRNAKMRTK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028160Slx9-like