mRNA_L-elsbetiae_contig6506.15196.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6506.15196.1
Unique NamemRNA_L-elsbetiae_contig6506.15196.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6506.15196.1 vs. uniprot
Match: D7G8P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P4_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 1.040e-46
Identity = 112/185 (60.54%), Postives = 128/185 (69.19%), Query Frame = 1 
Query:    1 MGRSDKKAKAPLRRAVSESAAPSRGQRKRALKKASLISKIGLTK---RARDNPKDSQQPPAPVPAKGDTAATQSRLAVNGSAFQRVVSNKGKRMLMSAEMGQLTAVLNATEFQEDPFAAIQAHLRQTACPAPPTADDDKARRSA---VSAKKVRVGQHSSKKREGREDKKPRTKPYKGRNAKMRT 537
            MG+ D KAK   RR VSESA PSRGQRKRALKKASLI KIGLT    R R   +D +Q P+ V        ++  LA  GSAFQRV SNKGKR LM++EMGQ+ AVL+A  FQ+DPFAAIQAHLRQTA P PP AD  KAR+     VSAK V  GQH+    E R D+KP+ KPYK RNAKMR+
Sbjct:   19 MGKIDTKAK--HRRPVSESAVPSRGQRKRALKKASLIKKIGLTSKHVRQRRTDEDEKQVPS-VATDEKGIPSRPSLAAKGSAFQRVSSNKGKRSLMTSEMGQINAVLSAPSFQQDPFAAIQAHLRQTALPTPPMADC-KARKPGKGKVSAKSV--GQHAG---ETRGDRKPKAKPYKARNAKMRS 194
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BLAST of mRNA_L-elsbetiae_contig6506.15196.1 vs. uniprot
Match: A0A835ZIC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIC9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.260e-7
Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = 1 
Query:   67 SRGQRKRALKKASLISKIGL-TKRARDNPKDSQQPPAPV---------PAKGDTAATQSRLA----VNGSAFQRVVSNKGKRMLMSAEMGQLTAVLNATEFQEDPFAAIQAHLRQT 372
            SRGQRKRA K+A+L+ K  L T       +++ +    +          A+  +  +Q R A    +  +  +R+++NKGKR +   E+ QL AVL    F+ DPFAAIQAH++ T
Sbjct:   32 SRGQRKRATKRAALVRKRTLVTANVEQRKQEAAKGLGSMGGLMETLTGAAEDASGPSQKRKAAKAQLRSAPARRIITNKGKRSVAEKELAQLAAVLANESFKRDPFAAIQAHMKLT 147
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6506.15196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8P4_ECTSI1.040e-4660.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZIC9_9STRA3.260e-735.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6506contigL-elsbetiae_contig6506:2970..3845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size543
Cds size543
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816718.8183975-CDS-L-elsbetiae_contig6506:2969..31221622816718.8183975-CDS-L-elsbetiae_contig6506:2969..3122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6506 2970..3122 +
1691683763.0705457-CDS-L-elsbetiae_contig6506:2969..31221691683763.0705457-CDS-L-elsbetiae_contig6506:2969..3122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6506 2970..3122 +
1622816718.8304307-CDS-L-elsbetiae_contig6506:3455..38451622816718.8304307-CDS-L-elsbetiae_contig6506:3455..3845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6506 3456..3845 +
1691683763.0799458-CDS-L-elsbetiae_contig6506:3455..38451691683763.0799458-CDS-L-elsbetiae_contig6506:3455..3845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6506 3456..3845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6506.15196.1prot_L-elsbetiae_contig6506.15196.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6506 2970..3845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6506.15196.1

>prot_L-elsbetiae_contig6506.15196.1 ID=prot_L-elsbetiae_contig6506.15196.1|Name=mRNA_L-elsbetiae_contig6506.15196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MGRSDKKAKAPLRRAVSESAAPSRGQRKRALKKASLISKIGLTKRARDNP
KDSQQPPAPVPAKGDTAATQSRLAVNGSAFQRVVSNKGKRMLMSAEMGQL
TAVLNATEFQEDPFAAIQAHLRQTACPAPPTADDDKARRSAVSAKKVRVG
QHSSKKREGREDKKPRTKPYKGRNAKMRTK*
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mRNA from alignment at L-elsbetiae_contig6506:2970..3845+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6506.15196.1 ID=mRNA_L-elsbetiae_contig6506.15196.1|Name=mRNA_L-elsbetiae_contig6506.15196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig6506:2970..3845+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTAGAAGCGACAAGAAGGCGAAGGCTCCACTACGGAGAGCAGTATC
AGAGTCTGCAGCCCCGAGTCGCGGACAGCGGAAGCGAGCCCTGAAGAAAG
CGTCTCTCATTAGCAAGATCGGGCTTACAAAGCGAGCCCGAGATAATCCC
AAGGTACTTCTTCGTCGTATGGATAGGTACCATTGTCTAGCGCTTCAATA
TGATGCGCGCGGTCTCACACCTCACTGGTCTCAACCGATTTTCTTCGCTC
TGGCTCTGTATTCAACTCTTTGCGAAGGGAGGTGTTCGTTGGTAAACATT
GCAGCGATTCGGATCGAAGCGTTGGATGCGCCATGTCTTTTCCCAATCGT
CCGTTGTTTTGGTGGCAGTTCTCTGCTCTGTACCGCCTAACTGGGTCTTC
GATTGGTTCACTAACAGCCGTGAGCCCTTGTGTACACCATCATTCAGCAT
TTCCCGGTGTCGTTGACATTCTTTACTTTTGGTCAGGATTCCCAACAACC
ACCCGCGCCCGTTCCGGCCAAGGGAGACACAGCTGCGACACAATCGCGCC
TCGCGGTAAACGGCTCAGCGTTCCAACGGGTGGTCAGCAACAAGGGGAAG
AGGATGCTCATGTCTGCCGAAATGGGGCAGCTGACGGCAGTCCTGAACGC
GACCGAGTTTCAGGAAGACCCCTTCGCTGCGATACAAGCCCATCTTAGAC
AAACAGCTTGCCCTGCCCCTCCTACCGCCGATGATGACAAGGCGCGAAGG
TCTGCCGTGTCTGCGAAAAAAGTTAGGGTAGGGCAGCATTCTTCGAAGAA
AAGAGAAGGCCGGGAAGACAAGAAACCAAGGACTAAGCCTTACAAAGGAA
GGAACGCAAAAATGAGGACAAAATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6506:2970..3845+

>mRNA_L-elsbetiae_contig6506.15196.1 ID=mRNA_L-elsbetiae_contig6506.15196.1|Name=mRNA_L-elsbetiae_contig6506.15196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig6506:2970..3845+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTAGAAGCGACAAGAAGGCGAAGGCTCCACTACGGAGAGCAGTATC
AGAGTCTGCAGCCCCGAGTCGCGGACAGCGGAAGCGAGCCCTGAAGAAAG
CGTCTCTCATTAGCAAGATCGGGCTTACAAAGCGAGCCCGAGATAATCCC
AAGATGGGTAGAAGCGACAAGAAGGCGAAGGCTCCACTACGGAGAGCAGT
ATCAGAGTCTGCAGCCCCGAGTCGCGGACAGCGGAAGCGAGCCCTGAAGA
AAGCGTCTCTCATTAGCAAGATCGGGCTTACAAAGCGAGCCCGAGATAAT
CCCAAGGATTCCCAACAACCACCCGCGCCCGTTCCGGCCAAGGGAGACAC
AGCTGCGACACAATCGCGCCTCGCGGTAAACGGCTCAGCGTTCCAACGGG
TGGTCAGCAACAAGGGGAAGAGGATGCTCATGTCTGCCGAAATGGGGCAG
CTGACGGCAGTCCTGAACGCGACCGAGTTTCAGGAAGACCCCTTCGCTGC
GATACAAGCCCATCTTAGACAAACAGCTTGCCCTGCCCCTCCTACCGCCG
ATGATGACAAGGCGCGAAGGTCTGCCGTGTCTGCGAAAAAAGTTAGGGTA
GGGCAGCATTCTTCGAAGAAAAGAGAAGGCCGGGAAGACAAGAAACCAAG
GACTAAGCCTTACAAAGGAAGGAACGCAAAAATGAGGACAAAATGAGATT
CCCAACAACCACCCGCGCCCGTTCCGGCCAAGGGAGACACAGCTGCGACA
CAATCGCGCCTCGCGGTAAACGGCTCAGCGTTCCAACGGGTGGTCAGCAA
CAAGGGGAAGAGGATGCTCATGTCTGCCGAAATGGGGCAGCTGACGGCAG
TCCTGAACGCGACCGAGTTTCAGGAAGACCCCTTCGCTGCGATACAAGCC
CATCTTAGACAAACAGCTTGCCCTGCCCCTCCTACCGCCGATGATGACAA
GGCGCGAAGGTCTGCCGTGTCTGCGAAAAAAGTTAGGGTAGGGCAGCATT
CTTCGAAGAAAAGAGAAGGCCGGGAAGACAAGAAACCAAGGACTAAGCCT
TACAAAGGAAGGAACGCAAAAATGAGGACAAAATGA
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