mRNA_L-elsbetiae_contig6505.15193.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6505.15193.1
Unique NamemRNA_L-elsbetiae_contig6505.15193.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6505.15193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6505contigL-elsbetiae_contig6505:1473..2752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816718.6480496-CDS-L-elsbetiae_contig6505:1472..14961622816718.6480496-CDS-L-elsbetiae_contig6505:1472..1496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6505 1473..1496 -
1691683762.9693005-CDS-L-elsbetiae_contig6505:1472..14961691683762.9693005-CDS-L-elsbetiae_contig6505:1472..1496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6505 1473..1496 -
1622816718.664152-CDS-L-elsbetiae_contig6505:2449..27521622816718.664152-CDS-L-elsbetiae_contig6505:2449..2752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6505 2450..2752 -
1691683762.9783874-CDS-L-elsbetiae_contig6505:2449..27521691683762.9783874-CDS-L-elsbetiae_contig6505:2449..2752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6505 2450..2752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6505.15193.1prot_L-elsbetiae_contig6505.15193.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6505 1473..2752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6505.15193.1

>prot_L-elsbetiae_contig6505.15193.1 ID=prot_L-elsbetiae_contig6505.15193.1|Name=mRNA_L-elsbetiae_contig6505.15193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
ASCTGAAPAPAPSYGFGAVDVDGGAGAGSGRSPGRPAGSTGSKQSAEGCG
IGIGGGGGGGGGTRIVGIERARRGRWASAISGRVQQSSFVRSGEDTTGVS
ERPSTLPSQ
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mRNA from alignment at L-elsbetiae_contig6505:1473..2752-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6505.15193.1 ID=mRNA_L-elsbetiae_contig6505.15193.1|Name=mRNA_L-elsbetiae_contig6505.15193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1280bp|location=Sequence derived from alignment at L-elsbetiae_contig6505:1473..2752- (Laminarionema elsbetiae ELsaHSoW15)
GCTTCTTGCACCGGTGCCGCTCCGGCCCCGGCCCCGTCCTACGGCTTTGG
TGCTGTCGATGTTGATGGCGGCGCTGGTGCCGGCAGCGGGCGCAGCCCCG
GCCGCCCTGCGGGAAGCACGGGCAGCAAGCAGTCAGCCGAAGGCTGCGGC
ATCGGCATCGGCGGCGGCGGTGGCGGCGGCGGCGGCACGAGGATTGTTGG
GATCGAGAGAGCCAGACGAGGACGGTGGGCAAGCGCGATCTCCGGAAGAG
TGCAGCAGTCTTCCTTCGTTCGGTCAGGAGAGGACACCACGGGGGTGTCG
GAGGTGAGAGAGCGTGCCTGATGTCACTACATTTTGTTTTGTTTTTTTCC
TCCCACTTTCTGCCATATTTGTCGTCTGCCCCACTACATGCGTACTTACA
AAGAGTGAGCGAGGTTTCTCACCACGAGCGACCTATACTACCCGGTTGAC
CCACTGCTAGGAAAATTGAAGGGGAGAAGTAATCATGTCTAATTAAATAT
ATATACATATTTTTCTCGCGAACGAGCCTAAAGCCACCACCAGCCTGCCC
GGGTCGTAACAGCCAGACAGCCGCGAAAAGAGCAAAACAAAATCGTTTGA
GGATGCAACAAGGCTAGGCTTGTATGTACTTCGTATGCCATTACTGTTGT
CACACGAACAGCAAAAAAATCTTCGCGTACTTTCACACCAGTAACAGACA
GCACTGACGTGCCCCCCCCCCCCGCCAGAGAAACACAAATATAGGATCGT
GCGTACCCCAGCAGCGCGCATGACGGGACGCCCCTCTCCCTCCCTGCACC
GAGAGAAACTGCACCGTACCGTGCGCGCCACGCATAAGCGCCAGCATCAA
CTCTTAGAAGCAGGATTTGCAAAACCCCGCATGCTTTTTTTTCTGCCCAG
GCTTGGCACGTACCAGGGGAGCAGGCCCCCAGGGAGCGCCAGGCTCTCGG
CTCCAGCTTGCCGAGCCGTATGCGGTCCAAACCGCCTAACCTCCACCATG
CCGATTTAATGTTTAGCTTGAGAACACCAGGAGATAAAGTACACAGAGTG
CGCACGAAGCCCATCAAGGTCGAGTTTACTCTTGTGTCCATACTTTCTAT
GCGAGCACTTTTACTCGCACTAGCAACGACGCATGTGCCCCAAGCATACA
TAATTCGTATACTTGCACCGCTTCATGCCCTTCCGCGCGCACGCTTCCAT
CCCTCGCCTCTTTCCCCTTGCCGCTGCGCTTTTTCCATGTCGCACTCGAA
TCCCAGCGTCCGTCTACACTTCCGTCCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6505:1473..2752-

>mRNA_L-elsbetiae_contig6505.15193.1 ID=mRNA_L-elsbetiae_contig6505.15193.1|Name=mRNA_L-elsbetiae_contig6505.15193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig6505:1473..2752- (Laminarionema elsbetiae ELsaHSoW15)
GCTTCTTGCACCGGTGCCGCTCCGGCCCCGGCCCCGTCCTACGGCTTTGG
TGCTGTCGATGTTGATGGCGGCGCTGGTGCCGGCAGCGGGCGCAGCCCCG
GCCGCCCTGCGGGAAGCACGGGCAGCAAGCAGTCAGCCGAAGGCTGCGGC
ATCGGCATCGGCGGCGGCGGTGGCGGCGGCGGCGGCACGAGGATTGTTGG
GATCGAGAGAGCCAGACGAGGACGGTGGGCAAGCGCGATCTCCGGAAGAG
TGCAGCAGTCTTCCTTCGTTCGGTCAGGAGAGGACACCACGGGGGTGTCG
GAGGCTTCTTGCACCGGTGCCGCTCCGGCCCCGGCCCCGTCCTACGGCTT
TGGTGCTGTCGATGTTGATGGCGGCGCTGGTGCCGGCAGCGGGCGCAGCC
CCGGCCGCCCTGCGGGAAGCACGGGCAGCAAGCAGTCAGCCGAAGGCTGC
GGCATCGGCATCGGCGGCGGCGGTGGCGGCGGCGGCGGCACGAGGATTGT
TGGGATCGAGAGAGCCAGACGAGGACGGTGGGCAAGCGCGATCTCCGGAA
GAGTGCAGCAGTCTTCCTTCGTTCGGTCAGGAGAGGACACCACGGGGGTG
TCGGAGCGTCCGTCTACACTTCCGTCCCAGCGTCCGTCTACACTTCCGTC
CCAG
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