mRNA_L-elsbetiae_contig6503.15191.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6503.15191.1
Unique NamemRNA_L-elsbetiae_contig6503.15191.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6503.15191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6503contigL-elsbetiae_contig6503:8710..10013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size364
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816718.5092454-CDS-L-elsbetiae_contig6503:8709..89911622816718.5092454-CDS-L-elsbetiae_contig6503:8709..8991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6503 8710..8991 -
1691683762.8747842-CDS-L-elsbetiae_contig6503:8709..89911691683762.8747842-CDS-L-elsbetiae_contig6503:8709..8991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6503 8710..8991 -
1622816718.5198321-CDS-L-elsbetiae_contig6503:9932..100131622816718.5198321-CDS-L-elsbetiae_contig6503:9932..10013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6503 9933..10013 -
1691683762.8837848-CDS-L-elsbetiae_contig6503:9932..100131691683762.8837848-CDS-L-elsbetiae_contig6503:9932..10013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6503 9933..10013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6503.15191.1prot_L-elsbetiae_contig6503.15191.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6503 8710..10013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6503.15191.1

>prot_L-elsbetiae_contig6503.15191.1 ID=prot_L-elsbetiae_contig6503.15191.1|Name=mRNA_L-elsbetiae_contig6503.15191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
CGHAYGRTFFIFVILAGSSKASSGAYKQRGEDEDPDRQLQHQGWEHSRPR
PRRHSGAIVSRCRRRQQPCGETYRTRSISGGCVPGGEGSVGDLWRVSSPG
YSEFGGSVPHRVGPHGGGTSG
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mRNA from alignment at L-elsbetiae_contig6503:8710..10013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6503.15191.1 ID=mRNA_L-elsbetiae_contig6503.15191.1|Name=mRNA_L-elsbetiae_contig6503.15191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1304bp|location=Sequence derived from alignment at L-elsbetiae_contig6503:8710..10013- (Laminarionema elsbetiae ELsaHSoW15)
TGTGGCCATGCCTATGGCAGGACGTTTTTCATCTTTGTCATCCTCGCCGG
TTCTAGCAAAGCGTCGAGTGGGGCCTACAAGGTGCGAAGAGGATGCGCCA
ATTGATACTGCGCCGGTTTGCAGTACTCTTTCGATGAAGAACAGAGAGGC
CGATATCTACCGTATGTTGAGGAACACGGGAGGCATGACGTGTTTGAAAA
GCAGCTGGTTCGTTGTTGTACACCAGACAGAGTAAGCCTTCTTCCGCGAT
GGAAAATAGCATGGGTTAGCGCTGGCAACACTGTATTACAGATTCAGGAT
CCCCCCAATTCCCCCGCAGACCGCTGTATTATGCAACATTATTTGCCGAA
TACATCGCTACACACGCCGTCGCGTGCTAGATACATGGATACATACTTAG
CAGAGTGCAACTGCTGTTGCGCTGCCGCACAGAGGGGTCCTGAGATTTCC
ACCTTCATCGCCCCCGCACCACAACTTCTTCATATTTCTTTCGCATCGAA
CTGCACACAAAATCACAAGCCTCGTCTGCACACGCACGCTTGTTTTCTTC
AAAGATCTCTGTATCTAGATGGGATGGTCGTCTACGATCCGGGACAGCAT
TTGCATGTAGGATCAGGGCTCCCCACTTTAGATAGCAGATAACGCGCTCG
CGAGAGAAGCGGAAACACCTCGTTGTGTTATGGCGTCATGTTGGATCATT
TCGTGCTTCCCTCTTGGAGTGGAGAACGGCTATTTCACCCCTCTCTCTCT
CTTACTCCGGGTTGCAACCGTGTTGTCAACGTCAGCGGGCCCGAGAAGCT
AGTATTGTTGAGAACGAGAACAGAACTATAAGGCACGCAAGTAGAGATTC
GCCTGCTGCTCGGATTGAACATGCATCGTGTGCGCGTGCGGCGCGGCGCG
GCGCGGCGATTTGCAAATCCTCCTTTCCATCCCACGGAGCCCCCCACCCC
ACCAATCTCCTGACGTGTGCCCTCTACGTACCGAGCGATCGTCCATCCCT
TTGCATTTATCCCCACCACCAGCAACGCGGCGAGGATGAGGATCCTGACC
GCCAGCTTCAGCATCAAGGTTGGGAGCACAGCCGTCCTCGCCCTCGGCGG
CACTCCGGTGCGATCGTTTCACGTTGCCGCCGCCGGCAGCAACCATGCGG
CGAAACCTACCGCACCCGCAGTATCAGCGGCGGCTGCGTTCCAGGAGGCG
AGGGCTCCGTGGGCGACCTTTGGCGGGTCTCGAGCCCGGGCTACTCGGAG
TTCGGCGGCAGCGTGCCGCACCGGGTTGGGCCGCATGGGGGCGGGACAAG
CGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6503:8710..10013-

>mRNA_L-elsbetiae_contig6503.15191.1 ID=mRNA_L-elsbetiae_contig6503.15191.1|Name=mRNA_L-elsbetiae_contig6503.15191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig6503:8710..10013- (Laminarionema elsbetiae ELsaHSoW15)
TGTGGCCATGCCTATGGCAGGACGTTTTTCATCTTTGTCATCCTCGCCGG
TTCTAGCAAAGCGTCGAGTGGGGCCTACAAGTGTGGCCATGCCTATGGCA
GGACGTTTTTCATCTTTGTCATCCTCGCCGGTTCTAGCAAAGCGTCGAGT
GGGGCCTACAAGCAACGCGGCGAGGATGAGGATCCTGACCGCCAGCTTCA
GCATCAAGGTTGGGAGCACAGCCGTCCTCGCCCTCGGCGGCACTCCGGTG
CGATCGTTTCACGTTGCCGCCGCCGGCAGCAACCATGCGGCGAAACCTAC
CGCACCCGCAGTATCAGCGGCGGCTGCGTTCCAGGAGGCGAGGGCTCCGT
GGGCGACCTTTGGCGGGTCTCGAGCCCGGGCTACTCGGAGTTCGGCGGCA
GCGTGCCGCACCGGGTTGGGCCGCATGGGGGCGGGACAAGCGGGCAACGC
GGCGAGGATGAGGATCCTGACCGCCAGCTTCAGCATCAAGGTTGGGAGCA
CAGCCGTCCTCGCCCTCGGCGGCACTCCGGTGCGATCGTTTCACGTTGCC
GCCGCCGGCAGCAACCATGCGGCGAAACCTACCGCACCCGCAGTATCAGC
GGCGGCTGCGTTCCAGGAGGCGAGGGCTCCGTGGGCGACCTTTGGCGGGT
CTCGAGCCCGGGCTACTCGGAGTTCGGCGGCAGCGTGCCGCACCGGGTTG
GGCCGCATGGGGGCGGGACAAGCGGG
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