mRNA_L-elsbetiae_contig65.15186.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig65.15186.1
Unique NamemRNA_L-elsbetiae_contig65.15186.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig65.15186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig65contigL-elsbetiae_contig65:63659..64477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size483
Cds size345
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig65.15186.1prot_L-elsbetiae_contig65.15186.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig65 63659..64339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816717.0796695-CDS-L-elsbetiae_contig65:63658..637031622816717.0796695-CDS-L-elsbetiae_contig65:63658..63703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig65 63659..63703 +
1691683761.7926602-CDS-L-elsbetiae_contig65:63658..637031691683761.7926602-CDS-L-elsbetiae_contig65:63658..63703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig65 63659..63703 +
1622816717.091835-CDS-L-elsbetiae_contig65:64039..643391622816717.091835-CDS-L-elsbetiae_contig65:64039..64339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig65 64040..64339 +
1691683761.8014617-CDS-L-elsbetiae_contig65:64039..643391691683761.8014617-CDS-L-elsbetiae_contig65:64039..64339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig65 64040..64339 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816717.103783-UTR-L-elsbetiae_contig65:64339..644771622816717.103783-UTR-L-elsbetiae_contig65:64339..64477Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig65 64340..64477 +
1691683761.8095424-UTR-L-elsbetiae_contig65:64339..644771691683761.8095424-UTR-L-elsbetiae_contig65:64339..64477Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig65 64340..64477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig65.15186.1

>prot_L-elsbetiae_contig65.15186.1 ID=prot_L-elsbetiae_contig65.15186.1|Name=mRNA_L-elsbetiae_contig65.15186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
ADERFVRTCEAQPVRTLGQGLDRYERDLGGAGSVAYLVLRRPPRFLGKEH
CDVYVCLGVNIRPRLPEESLGLFFTLYRDVIDGLRPRRGVARTGAKIESS
RWIKVKEGGGNNWR*
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mRNA from alignment at L-elsbetiae_contig65:63659..64477+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig65.15186.1 ID=mRNA_L-elsbetiae_contig65.15186.1|Name=mRNA_L-elsbetiae_contig65.15186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=819bp|location=Sequence derived from alignment at L-elsbetiae_contig65:63659..64477+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGACGAACGGTTCGTCCGTACCTGCGAAGCTCAGCCTGTTCGGGTGAG
TTGTTTGTTTCGTGCGATCCCACCCTGCCTGGTCGATTTGAGTCTGTTTT
TTGCTTTACGGGCGAGCAAGAAGAGGCAGATTCATTTTGGAAGGAAACGA
TTTGTGTATTTGTAACAAATGTACGTGTGTGCAACCAGCAGGAACGCACC
CAAGGTGGAGTTGAAAGCGATACTACGTTCCTCCGTCTCGCCGCAAGATT
AAACGCCATCTAGAGCTTGTAATTGTTCTTTGCGCCATGAGTTCTTGGCA
ATTTGGTACTCACCGACAACAACAACAACTTACACGACGAAACTAACACT
TCTCCCGTCCCATCTTGCCTTTGTTTTTCAGACACTTGGTCAAGGCCTTG
ATCGTTACGAGCGTGATCTGGGTGGTGCAGGTTCTGTCGCATATCTGGTA
CTGCGTCGCCCACCTCGTTTCCTGGGCAAGGAGCACTGTGATGTTTATGT
TTGTCTCGGTGTTAATATCCGTCCTCGGCTGCCGGAAGAAAGCCTCGGCC
TATTTTTTACTCTCTATCGTGACGTAATAGATGGGTTAAGGCCAAGGAGA
GGGGTGGCAAGAACTGGCGCGAAAATAGAGAGTAGTAGGTGGATCAAGGT
TAAGGAGGGGGGTGGCAACAATTGGCGATAATGCGGTTGGTTTTGTTCTG
TTTTAGTCCTCCGGAATGCTGTACCTACATACACATATATCTGATGTTTT
TTGTCTTTCTTTGGTATTGGTGGCGTTAAATGCTTCAAAGGGGCGGCTCG
TCGTGAATTGTCCCAATGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig65:63659..64477+

>mRNA_L-elsbetiae_contig65.15186.1 ID=mRNA_L-elsbetiae_contig65.15186.1|Name=mRNA_L-elsbetiae_contig65.15186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig65:63659..64477+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGACGAACGGTTCGTCCGTACCTGCGAAGCTCAGCCTGTTCGGGCCGA
CGAACGGTTCGTCCGTACCTGCGAAGCTCAGCCTGTTCGGACACTTGGTC
AAGGCCTTGATCGTTACGAGCGTGATCTGGGTGGTGCAGGTTCTGTCGCA
TATCTGGTACTGCGTCGCCCACCTCGTTTCCTGGGCAAGGAGCACTGTGA
TGTTTATGTTTGTCTCGGTGTTAATATCCGTCCTCGGCTGCCGGAAGAAA
GCCTCGGCCTATTTTTTACTCTCTATCGTGACGTAATAGATGGGTTAAGG
CCAAGGAGAGGGGTGGCAAGAACTGGCGCGAAAATAGAGAGTAGTAGGTG
GATCAAGGTTAAGGAGGGGGGTGGCAACAATTGGCGATAAACACTTGGTC
AAGGCCTTGATCGTTACGAGCGTGATCTGGGTGGTGCAGGTTCTGTCGCA
TATCTGGTACTGCGTCGCCCACCTCGTTTCCTGGGCAAGGAGCACTGTGA
TGTTTATGTTTGTCTCGGTGTTAATATCCGTCCTCGGCTGCCGGAAGAAA
GCCTCGGCCTATTTTTTACTCTCTATCGTGACGTAATAGATGGGTTAAGG
CCAAGGAGAGGGGTGGCAAGAACTGGCGCGAAAATAGAGAGTAGTAGGTG
GATCAAGGTTAAGGAGGGGGGTGGCAACAATTGGCGATAA
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