mRNA_L-elsbetiae_contig65.15185.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig65.15185.1
Unique NamemRNA_L-elsbetiae_contig65.15185.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig65.15185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig65contigL-elsbetiae_contig65:62801..63534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size328
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816717.033864-CDS-L-elsbetiae_contig65:62800..631021622816717.033864-CDS-L-elsbetiae_contig65:62800..63102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig65 62801..63102 +
1691683761.7587862-CDS-L-elsbetiae_contig65:62800..631021691683761.7587862-CDS-L-elsbetiae_contig65:62800..63102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig65 62801..63102 +
1622816717.0450993-CDS-L-elsbetiae_contig65:63508..635331622816717.0450993-CDS-L-elsbetiae_contig65:63508..63533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig65 63509..63533 +
1691683761.771456-CDS-L-elsbetiae_contig65:63508..635331691683761.771456-CDS-L-elsbetiae_contig65:63508..63533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig65 63509..63533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig65.15185.1prot_L-elsbetiae_contig65.15185.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig65 62801..63533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig65.15185.1

>prot_L-elsbetiae_contig65.15185.1 ID=prot_L-elsbetiae_contig65.15185.1|Name=mRNA_L-elsbetiae_contig65.15185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
VTGGTYIPQLSDRGSSSSGESSSSSGEEHHALDHRNQRLGSVVHRSEWAD
GLRGDRDDGISLESNNNNHSNSEFGTEVTENENISTTSTASEADTRGLLS
RCSFWMMMR
back to top

mRNA from alignment at L-elsbetiae_contig65:62801..63534+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig65.15185.1 ID=mRNA_L-elsbetiae_contig65.15185.1|Name=mRNA_L-elsbetiae_contig65.15185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=734bp|location=Sequence derived from alignment at L-elsbetiae_contig65:62801..63534+ (Laminarionema elsbetiae ELsaHSoW15)
GTAACCGGTGGTACCTACATACCCCAACTTTCAGACCGCGGCTCGAGCAG
CAGCGGCGAAAGCTCGAGCAGCAGCGGCGAAGAACACCATGCCCTCGACC
ACCGCAACCAACGTTTGGGCTCTGTGGTCCACCGCAGTGAGTGGGCTGAC
GGGCTGCGCGGAGACCGGGATGATGGTATTTCCCTGGAAAGCAACAACAA
CAACCACAGCAACAGCGAATTCGGCACCGAGGTCACCGAAAACGAAAACA
TCTCCACCACTTCGACGGCGAGCGAGGCTGATACTCGGGGTTTGCTGTCC
AGGTGCTGTGGGTTCATAATATGATCCTGCTGGTGGTTTTTGTTCTTCAG
TTTTATTTTCAGTGCTCGATCTGGGCTCCCTGTCACGCGGACATCTTGCC
TGAGTACTGAACCGCGGTCTCATCGAAGGGTTCCTTTCCCCAAGGCCCCT
ACCCCCCCCTTCTGCAGTGCTTGCCTAATATATTTTTCGCGAGAAGGGTG
CAGCCGTCCCTTTCCCTCGTCGAACGGTGAGGTCGAAGTATGTAGGTTGT
CATCACTTTATATAGGTGTTGTGACTGCATATTTGTCTACGCACTGCAAG
TATCCAATACTGCTTGAACCCAAAAAATAATAACAACGCGCCAAGGTGAA
GCGAAGACAACAGCAATTCACCGCAACGCACAACGCTATTAACGTTTAAA
CATCTCAGGTGCAGCTTCTGGATGATGATGAGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig65:62801..63534+

>mRNA_L-elsbetiae_contig65.15185.1 ID=mRNA_L-elsbetiae_contig65.15185.1|Name=mRNA_L-elsbetiae_contig65.15185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig65:62801..63534+ (Laminarionema elsbetiae ELsaHSoW15)
GTAACCGGTGGTACCTACATACCCCAACTTTCAGACCGCGGCTCGAGCAG
CAGCGGCGAAAGCTCGAGCAGCAGCGGCGAAGAACACCATGCCCTCGACC
ACCGCAACCAACGTTTGGGCTCTGTGGTCCACCGCAGTGAGTGGGCTGAC
GGGCTGCGCGGAGACCGGGATGATGGTATTTCCCTGGAAAGCAACAACAA
CAACCACAGCAACAGCGAATTCGGCACCGAGGTCACCGAAAACGAAAACA
TCTCCACCACTTCGACGGCGAGCGAGGCTGATACTCGGGGTTTGCTGTCC
AGGTAACCGGTGGTACCTACATACCCCAACTTTCAGACCGCGGCTCGAGC
AGCAGCGGCGAAAGCTCGAGCAGCAGCGGCGAAGAACACCATGCCCTCGA
CCACCGCAACCAACGTTTGGGCTCTGTGGTCCACCGCAGTGAGTGGGCTG
ACGGGCTGCGCGGAGACCGGGATGATGGTATTTCCCTGGAAAGCAACAAC
AACAACCACAGCAACAGCGAATTCGGCACCGAGGTCACCGAAAACGAAAA
CATCTCCACCACTTCGACGGCGAGCGAGGCTGATACTCGGGGTTTGCTGT
CCAGGTGCAGCTTCTGGATGATGATGAGGGTGCAGCTTCTGGATGATGAT
GAGG
back to top