mRNA_L-elsbetiae_contig6492.15172.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6492.15172.1
Unique NamemRNA_L-elsbetiae_contig6492.15172.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6492.15172.1 vs. uniprot
Match: A0A6H5KKY5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKY5_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 9.530e-10
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 3 
Query:    6 CAKCKHGGPVLVCEACELLYHPKCVGLAGVPEGDWFCSPC 125
            C  C  GG ++ C+ CE +YHP+CVGL+ VPEGDWFC  C
Sbjct:  931 CGGCHAGGDLICCDGCEAVYHPECVGLSVVPEGDWFCPAC 970
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BLAST of mRNA_L-elsbetiae_contig6492.15172.1 vs. uniprot
Match: A0A067E5D3_CITSI (Uncharacterized protein n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067E5D3_CITSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.150e-8
Identity = 23/40 (57.50%), Postives = 26/40 (65.00%), Query Frame = 3 
Query:    6 CAKCKHGGPVLVCEACELLYHPKCVGLAGVPEGDWFCSPC 125
            C  CK  G +L C+ C   YH KCVG+A VPEGDWFC  C
Sbjct:  335 CCLCKMDGSLLCCDGCPAAYHSKCVGVANVPEGDWFCPEC 374
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BLAST of mRNA_L-elsbetiae_contig6492.15172.1 vs. uniprot
Match: V4U0P2_CITCL (Uncharacterized protein n=5 Tax=Citrus TaxID=2706 RepID=V4U0P2_CITCL)

HSP 1 Score: 60.5 bits (145), Expect = 1.160e-8
Identity = 23/40 (57.50%), Postives = 26/40 (65.00%), Query Frame = 3 
Query:    6 CAKCKHGGPVLVCEACELLYHPKCVGLAGVPEGDWFCSPC 125
            C  CK  G +L C+ C   YH KCVG+A VPEGDWFC  C
Sbjct:  614 CCLCKMDGSLLCCDGCPAAYHSKCVGVANVPEGDWFCPEC 653
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BLAST of mRNA_L-elsbetiae_contig6492.15172.1 vs. uniprot
Match: A0A1E7ELW8_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ELW8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.180e-8
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 3 
Query:    6 CAKCKHGGPVLVCEACELLYHPKCVGLAGVPEGDWFCSPC 125
            C  C   G +L+C+ C  + HPKCVGLA VPEGDWFC  C
Sbjct: 2132 CIHCGCAGDLLICDGCPNVSHPKCVGLAEVPEGDWFCKKC 2171
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BLAST of mRNA_L-elsbetiae_contig6492.15172.1 vs. uniprot
Match: A0A5P1EA01_ASPOF (Uncharacterized protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EA01_ASPOF)

HSP 1 Score: 58.9 bits (141), Expect = 3.950e-8
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 3 
Query:    6 CAKCKHGGPVLVCEACELLYHPKCVGLAGVPEGDWFCSPC 125
            C+ C  GG +L+C+ C   +HP CVGL GVPEG+W+C+ C
Sbjct:  502 CSVCFDGGELLLCDHCPSAFHPDCVGLEGVPEGNWYCASC 541
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BLAST of mRNA_L-elsbetiae_contig6492.15172.1 vs. uniprot
Match: A0A835QP24_VANPL (PHD-type domain-containing protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QP24_VANPL)

HSP 1 Score: 58.5 bits (140), Expect = 5.270e-8
Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = 3 
Query:    3 VCAKCKHGGPVLVCEACELLYHPKCVGLAGVPEGDWFCSPC 125
            VC+ C  GG +++C+ C   +HP C+GL  VPEG+WFC  C
Sbjct:  264 VCSVCHDGGMLMICDLCPSAFHPTCIGLQDVPEGNWFCPSC 304
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BLAST of mRNA_L-elsbetiae_contig6492.15172.1 vs. uniprot
Match: A0A371EU66_MUCPR (Protein PMR5 (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371EU66_MUCPR)

HSP 1 Score: 58.5 bits (140), Expect = 5.510e-8
Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 3 
Query:    3 VCAKCKHGGPVLVCEACELLYHPKCVGLAGVPEGDWFCSPC 125
            VC+ C++GG +++C+ C   +H  C+GLA VP+GDWFC  C
Sbjct:  798 VCSVCQYGGELILCDQCPSAFHRTCLGLADVPDGDWFCPSC 838
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BLAST of mRNA_L-elsbetiae_contig6492.15172.1 vs. uniprot
Match: A0A8B8MKL4_ABRPR (uncharacterized protein LOC113874420 n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8MKL4_ABRPR)

HSP 1 Score: 58.2 bits (139), Expect = 7.460e-8
Identity = 18/41 (43.90%), Postives = 31/41 (75.61%), Query Frame = 3 
Query:    3 VCAKCKHGGPVLVCEACELLYHPKCVGLAGVPEGDWFCSPC 125
            VC+ C++GG +++C+ C   +H +C+G+A +P+GDWFC  C
Sbjct:  799 VCSVCQYGGELILCDQCPSSFHKECLGMADIPDGDWFCPSC 839
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BLAST of mRNA_L-elsbetiae_contig6492.15172.1 vs. uniprot
Match: A0A150GUM3_GONPE (PHD-type domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GUM3_GONPE)

HSP 1 Score: 57.8 bits (138), Expect = 9.860e-8
Identity = 21/40 (52.50%), Postives = 28/40 (70.00%), Query Frame = 3 
Query:    6 CAKCKHGGPVLVCEACELLYHPKCVGLAGVPEGDWFCSPC 125
            C  C   G +++CE C+   HP+CVGL GVPEGDW+C+ C
Sbjct:  518 CGVCGGPGTLVLCEGCDTAAHPRCVGLPGVPEGDWYCAFC 557
[Close]
BLAST of mRNA_L-elsbetiae_contig6492.15172.1 vs. uniprot
Match: A0A2I0BGH5_9ASPA (Chromodomain-helicase-DNA-binding protein 4 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0BGH5_9ASPA)

HSP 1 Score: 57.8 bits (138), Expect = 9.880e-8
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 3 
Query:    3 VCAKCKHGGPVLVCEACELLYHPKCVGLAGVPEGDWFCSPC 125
            VC  C  GG +L+C+ C   +HP CVGL  VPEG+WFC  C
Sbjct:  524 VCTVCLDGGTLLLCDLCPSAFHPTCVGLECVPEGNWFCPSC 564
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6492.15172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKY5_9PHAE9.530e-1057.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A067E5D3_CITSI1.150e-857.50Uncharacterized protein n=1 Tax=Citrus sinensis Ta... [more]
V4U0P2_CITCL1.160e-857.50Uncharacterized protein n=5 Tax=Citrus TaxID=2706 ... [more]
A0A1E7ELW8_9STRA2.180e-857.50Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A5P1EA01_ASPOF3.950e-852.50Uncharacterized protein n=2 Tax=Asparagus officina... [more]
A0A835QP24_VANPL5.270e-848.78PHD-type domain-containing protein n=2 Tax=Vanilla... [more]
A0A371EU66_MUCPR5.510e-848.78Protein PMR5 (Fragment) n=1 Tax=Mucuna pruriens Ta... [more]
A0A8B8MKL4_ABRPR7.460e-843.90uncharacterized protein LOC113874420 n=1 Tax=Abrus... [more]
A0A150GUM3_GONPE9.860e-852.50PHD-type domain-containing protein n=1 Tax=Gonium ... [more]
A0A2I0BGH5_9ASPA9.880e-853.66Chromodomain-helicase-DNA-binding protein 4 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6492contigL-elsbetiae_contig6492:5750..6539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size274
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816716.4153175-CDS-L-elsbetiae_contig6492:5750..59631622816716.4153175-CDS-L-elsbetiae_contig6492:5750..5963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6492 5751..5963 -
1691683761.3315828-CDS-L-elsbetiae_contig6492:5750..59631691683761.3315828-CDS-L-elsbetiae_contig6492:5750..5963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6492 5751..5963 -
1622816716.4266796-CDS-L-elsbetiae_contig6492:6479..65391622816716.4266796-CDS-L-elsbetiae_contig6492:6479..6539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6492 6480..6539 -
1691683761.346503-CDS-L-elsbetiae_contig6492:6479..65391691683761.346503-CDS-L-elsbetiae_contig6492:6479..6539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6492 6480..6539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6492.15172.1prot_L-elsbetiae_contig6492.15172.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6492 5751..6539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6492.15172.1

>prot_L-elsbetiae_contig6492.15172.1 ID=prot_L-elsbetiae_contig6492.15172.1|Name=mRNA_L-elsbetiae_contig6492.15172.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
RCAPNANTADLCWCVRHANYCTTQSASGLPVCRRGTGSARHAERASRPPY
IPPRRRRSRKRGRSAKLGTSRGARGSRRRCRGAKVPLKATR
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mRNA from alignment at L-elsbetiae_contig6492:5750..6539-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6492.15172.1 ID=mRNA_L-elsbetiae_contig6492.15172.1|Name=mRNA_L-elsbetiae_contig6492.15172.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=790bp|location=Sequence derived from alignment at L-elsbetiae_contig6492:5750..6539- (Laminarionema elsbetiae ELsaHSoW15)
AGGTGTGCGCCAAATGCAAACACGGCGGACCTGTGTTGGTGTGTGAGGCA
TGCGAATTATGTAAGTCCTCTGCTGGCTCTCTCTTGTAGGCTTGATTTTT
TGCCCCGAACCAAACCATATGCCTAACGCATGGTCGCCCCCCCGTGGACA
AGTTGGTACTCCCGAACCCTTTGAGTGCGAGCATCTCGTGGGCGTGATAA
ATGAGCAATTTTGCAGTGGACAGGATACGCTCGTGGATAAACACCCCCAA
AGAGGGAAGAGACTGGGGAACCCTTCTCCCGAGAAGTATTGAAAGCACGT
TGGAGCACAGAAACAGAACAAAAGTGCCCCTTAGTTCGCCCTCTCCTCCT
CCTGTGTGACCTCGGCTGATACGTCACACCTACGTTTCGGAAGAATGTAG
ACCGGTGCCCAAAATTTTATCGGGCGAAAACGCACACAAATAACATTGGC
CACTCATGCTTATTAAGACCAGTTCGGGTCGCCATATTGAACTTTCCGCC
GACAATTTTGAGGATTCCAGACAAGGACAACCCTTCGCCGACCAACGCCC
GTACTGCCATTTTGCATGACTGACAGTGTACCACCCAAAGTGCGTCGGGC
TTGCCGGTGTGCCGGAGGGGGACTGGTTCTGCTCGCCATGCGGAGCGAGC
GAGTCGTCCTCCTTACATTCCCCCCCGGCGGCGGCGGTCGCGGAAGCGCG
GGAGGTCTGCGAAGCTGGGAACCTCAAGAGGAGCGCGCGGGAGTCGACGA
CGATGCCGAGGTGCAAAAGTCCCGCTAAAGGCAACCCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6492:5750..6539-

>mRNA_L-elsbetiae_contig6492.15172.1 ID=mRNA_L-elsbetiae_contig6492.15172.1|Name=mRNA_L-elsbetiae_contig6492.15172.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig6492:5750..6539- (Laminarionema elsbetiae ELsaHSoW15)
AGGTGTGCGCCAAATGCAAACACGGCGGACCTGTGTTGGTGTGTGAGGCA
TGCGAATTATAGGTGTGCGCCAAATGCAAACACGGCGGACCTGTGTTGGT
GTGTGAGGCATGCGAATTATTGTACCACCCAAAGTGCGTCGGGCTTGCCG
GTGTGCCGGAGGGGGACTGGTTCTGCTCGCCATGCGGAGCGAGCGAGTCG
TCCTCCTTACATTCCCCCCCGGCGGCGGCGGTCGCGGAAGCGCGGGAGGT
CTGCGAAGCTGGGAACCTCAAGAGGAGCGCGCGGGAGTCGACGACGATGC
CGAGGTGCAAAAGTCCCGCTAAAGGCAACCCGGTGTACCACCCAAAGTGC
GTCGGGCTTGCCGGTGTGCCGGAGGGGGACTGGTTCTGCTCGCCATGCGG
AGCGAGCGAGTCGTCCTCCTTACATTCCCCCCCGGCGGCGGCGGTCGCGG
AAGCGCGGGAGGTCTGCGAAGCTGGGAACCTCAAGAGGAGCGCGCGGGAG
TCGACGACGATGCCGAGGTGCAAAAGTCCCGCTAAAGGCAACCCGG
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